+D GENES KO
#
KEGG Orthology (KO) - Jonesia denitrificans
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:jde00010]
D Jden_0238 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_1441 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_0370 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Jden_1228 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Jden_1438 phosphofructokinase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D Jden_2420 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Jden_1258 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Jden_1256 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Jden_1257 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Jden_2086 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Jden_1924 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Jden_1221 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Jden_1512 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Jden_1476 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_1053 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Jden_1798 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Jden_0114 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Jden_2230 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Jden_0726 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Jden_0258 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Jden_1492 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D Jden_0126 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D Jden_0939 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:jde00020]
D Jden_0803 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D Jden_1402 aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Jden_0685 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Jden_1806 2-oxoglutarate dehydrogenase, E1 subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_0672 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Jden_0671 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Jden_0819 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Jden_0818 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Jden_0821 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Jden_0820 Succinate dehydrogenase hydrophobic anchor subunit-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Jden_0742 fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Jden_0688 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Jden_1572 malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D Jden_1298 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D Jden_1512 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Jden_1476 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:jde00030]
D Jden_0370 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Jden_1262 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Jden_1585 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Jden_1260 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D Jden_1948 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Jden_1311 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Jden_1264 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Jden_1509 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Jden_0947 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Jden_1589 Fructose-6-phosphate phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D Jden_0832 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Jden_0258 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Jden_1942 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Jden_2209 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Jden_2408 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12]
D Jden_2208 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Jden_2420 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Jden_1228 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Jden_1438 phosphofructokinase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:jde00040]
D Jden_0329 Pectate lyase K22539 PLY; pectate lyase [EC:4.2.2.2]
D Jden_2405 Glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D Jden_2407 mandelate racemase/muconate-lactonizing protein K08323 rspA; mannonate dehydratase [EC:4.2.1.8]
D Jden_2406 mannitol dehydrogenase domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D Jden_0034 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Jden_1273 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Jden_0497 class II aldolase/adducin family protein K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Jden_1311 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Jden_0498 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D Jden_0467 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D Jden_0466 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Jden_2461 FAD linked oxidase domain protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D Jden_1842 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K21681 bcs1; ribitol-5-phosphate 2-dehydrogenase (NADP+) / D-ribitol-5-phosphate cytidylyltransferase [EC:1.1.1.405 2.7.7.40]
C 00051 Fructose and mannose metabolism [PATH:jde00051]
D Jden_2228 glycoside hydrolase family 5 K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Jden_2229 glycoside hydrolase family 5 K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Jden_0744 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Jden_1993 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Jden_0834 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Jden_1856 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Jden_0822 Mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Jden_1228 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Jden_1438 phosphofructokinase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D Jden_0064 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D Jden_2461 FAD linked oxidase domain protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D Jden_0466 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Jden_2420 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Jden_1258 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Jden_0947 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Jden_0065 putative PTS IIA-like nitrogen-regulatory protein PtsN K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D Jden_0066 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Jden_2195 HAD-superfamily hydrolase, subfamily IA, variant 3 K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:jde00052]
D Jden_0726 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Jden_2211 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Jden_2212 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Jden_2268 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Jden_1273 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Jden_0258 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Jden_0238 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_1441 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_0104 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D Jden_0311 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D Jden_0378 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D Jden_1764 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D Jden_2397 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D Jden_2533 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Jden_0514 glycoside hydrolase, clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Jden_2479 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Jden_0498 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D Jden_1228 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Jden_1524 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Jden_1529 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:jde00053]
D Jden_0034 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Jden_0497 class II aldolase/adducin family protein K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:jde00500]
D Jden_1524 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Jden_1529 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Jden_1273 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Jden_0198 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0471 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0472 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1770 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_2534 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1754 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Jden_1879 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Jden_0538 glycoside hydrolase family 6 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Jden_0734 glycoside hydrolase family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Jden_0735 glycoside hydrolase family 6 K19668 CBH2; cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91]
D Jden_1172 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Jden_1729 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Jden_0674 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Jden_1926 Alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D Jden_1927 alpha amylase catalytic region K01176 AMY; alpha-amylase [EC:3.2.1.1]
D Jden_1728 trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D Jden_0941 4-alpha-glucanotransferase-like protein K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Jden_1727 alpha amylase catalytic region K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D Jden_1173 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Jden_0939 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Jden_1726 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Jden_2063 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D Jden_2064 trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D Jden_0258 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Jden_0238 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_1441 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_0370 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Jden_0744 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00620 Pyruvate metabolism [PATH:jde00620]
D Jden_2230 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Jden_1512 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Jden_1476 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_1398 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Jden_1798 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Jden_0114 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Jden_0642 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Jden_0643 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Jden_1221 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Jden_0845 Carbamoyl-phosphate synthase L chain ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Jden_1053 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Jden_0024 thiamine pyrophosphate protein TPP binding domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D Jden_1298 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D Jden_0688 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Jden_1572 malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D Jden_0742 fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_1540 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Jden_1702 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:jde00630]
D Jden_0688 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Jden_0803 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D Jden_1402 aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Jden_2230 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_0845 Carbamoyl-phosphate synthase L chain ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D Jden_0850 carboxyl transferase K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D Jden_1101 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Jden_2445 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Jden_2549 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Jden_1484 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1487 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_0694 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_1457 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Jden_2209 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Jden_1806 2-oxoglutarate dehydrogenase, E1 subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D Jden_0690 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:jde00640]
D Jden_2230 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Jden_0642 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Jden_0643 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Jden_2468 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Jden_2467 Transketolase central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Jden_2466 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_1398 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Jden_2376 acyl-CoA oxidase domain protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Jden_0845 Carbamoyl-phosphate synthase L chain ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D Jden_0850 carboxyl transferase K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D Jden_0671 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Jden_0672 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Jden_1402 aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Jden_1053 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:jde00650]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_1798 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Jden_0819 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Jden_0818 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Jden_0821 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Jden_0820 Succinate dehydrogenase hydrophobic anchor subunit-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Jden_1398 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Jden_1710 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Jden_1709 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Jden_0784 Alcohol dehydrogenase zinc-binding domain protein K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:jde00660]
D Jden_1710 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Jden_1709 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Jden_0671 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Jden_0672 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Jden_1704 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:jde00562]
D Jden_1412 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Jden_2528 inositol 1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Jden_1376 CDP-alcohol phosphatidyltransferase K27681 pgsA; phosphatidylinositol phosphate synthase [EC:2.7.8.-]
D Jden_1258 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:jde00190]
D Jden_0539 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Jden_0540 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Jden_0541 NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Jden_0542 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Jden_0543 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Jden_0544 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Jden_0545 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Jden_0546 NADH dehydrogenase (quinone) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Jden_0547 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Jden_0548 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Jden_0549 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Jden_0550 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Jden_0551 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Jden_0552 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Jden_1919 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Jden_0819 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Jden_0818 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Jden_0821 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Jden_0820 Succinate dehydrogenase hydrophobic anchor subunit-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Jden_1448 Rieske (2Fe-2S) domain protein K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Jden_1449 cytochrome b/b6 domain protein K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D Jden_1447 cytochrome c class I K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D Jden_1265 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Jden_1451 hypothetical protein K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D Jden_1446 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D Jden_1452 cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D Jden_1453 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Jden_1135 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Jden_1654 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Jden_1655 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Jden_1776 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Jden_1774 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Jden_1775 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Jden_1777 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Jden_1773 H+transporting two-sector ATPase delta/epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Jden_1780 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Jden_1778 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Jden_1779 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Jden_2109 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D Jden_2235 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:jde00710]
D Jden_1257 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Jden_1256 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Jden_2420 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Jden_1264 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Jden_0947 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Jden_1258 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Jden_1311 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Jden_1509 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Jden_0688 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:jde00720]
D Jden_1298 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D Jden_0688 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Jden_0742 fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Jden_0819 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Jden_0818 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Jden_0821 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Jden_0820 Succinate dehydrogenase hydrophobic anchor subunit-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Jden_0672 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Jden_0671 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_0685 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Jden_1402 aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Jden_0695 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Jden_0190 Methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Jden_0643 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Jden_0642 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Jden_2230 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:jde00680]
D Jden_0694 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Jden_1924 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Jden_0688 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Jden_2420 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Jden_1228 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Jden_0642 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Jden_0643 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Jden_2230 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Jden_2086 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Jden_1058 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Jden_1990 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Jden_1168 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Jden_0964 F420-dependent oxidoreductase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
C 00910 Nitrogen metabolism [PATH:jde00910]
D Jden_1233 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Jden_2362 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Jden_1235 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Jden_1236 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Jden_1238 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Jden_2361 molybdopterin oxidoreductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D Jden_2360 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00360 nasB; assimilatory nitrate reductase electron transfer subunit [EC:1.7.99.-]
D Jden_2201 nitrite reductase (NAD(P)H), large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D Jden_2202 Rieske (2Fe-2S) domain protein K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D Jden_0150 Nitrite reductase (NO-forming) K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D Jden_2359 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Jden_1484 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1487 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1219 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Jden_1220 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Jden_0743 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:jde00920]
D Jden_2354 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Jden_2355 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Jden_2356 sulfate ABC transporter, inner membrane subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Jden_2357 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Jden_1276 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D Jden_0659 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Jden_0660 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Jden_0661 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Jden_0662 Sulfite reductase (ferredoxin) K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D Jden_0631 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Jden_0951 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Jden_0952 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Jden_2112 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Jden_1681 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Jden_2393 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:jde00061]
D Jden_0845 Carbamoyl-phosphate synthase L chain ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D Jden_1517 phosphopantetheine-binding K02078 acpP; acyl carrier protein
D Jden_1515 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Jden_0108 Beta-ketoacyl-acyl-carrier-protein synthase I K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Jden_1516 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Jden_1518 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Jden_2379 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Jden_0962 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1327 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1442 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:jde00071]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_1394 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Jden_2376 acyl-CoA oxidase domain protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Jden_0962 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1327 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1442 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_0679 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D Jden_1798 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:jde00074]
D Jden_0845 Carbamoyl-phosphate synthase L chain ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D Jden_0624 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Jden_1517 phosphopantetheine-binding K02078 acpP; acyl carrier protein
D Jden_1515 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Jden_1165 short-chain dehydrogenase/reductase SDR K11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]
D Jden_0850 carboxyl transferase K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:jde00561]
D Jden_1457 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Jden_0114 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Jden_0972 dihydroxyacetone kinase, DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D Jden_0973 dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D Jden_0974 dihydroxyacetone kinase, phosphotransfer subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D Jden_0485 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Jden_1122 HAD-superfamily hydrolase, subfamily IIA K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D Jden_1439 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Jden_0514 glycoside hydrolase, clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Jden_2479 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:jde00564]
D Jden_1682 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Jden_0487 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Jden_1439 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Jden_2245 Glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Jden_1008 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Jden_1035 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Jden_1297 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Jden_1306 CDP-alcohol phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:jde00600]
D Jden_1646 pyridoxal-dependent decarboxylase K01634 SGPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27]
D Jden_0514 glycoside hydrolase, clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Jden_2479 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Jden_0232 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:jde00592]
D Jden_2376 acyl-CoA oxidase domain protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Jden_1394 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:jde01040]
D Jden_2376 acyl-CoA oxidase domain protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Jden_1807 conserved hypothetical protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Jden_0935 acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:jde00230]
D Jden_0258 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Jden_1942 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Jden_2352 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Jden_2413 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Jden_0677 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Jden_2364 phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D Jden_2411 phosphoribosylformylglycinamidine synthase, purS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D Jden_2410 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Jden_2351 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Jden_1867 phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Jden_1866 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Jden_2412 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Jden_2476 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Jden_0678 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Jden_1364 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Jden_0697 5'-Nucleotidase domain protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Jden_2424 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D Jden_0835 purine nucleotide phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Jden_1078 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Jden_2105 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Jden_0638 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Jden_0641 IMP dehydrogenase family protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Jden_0976 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Jden_0887 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Jden_0120 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Jden_0650 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Jden_1318 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Jden_1752 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Jden_1751 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Jden_2207 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Jden_1523 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Jden_1363 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Jden_1920 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Jden_0358 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D Jden_0852 adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Jden_2416 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Jden_0572 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D Jden_0831 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D Jden_1580 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D Jden_0608 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Jden_1377 histidine triad (HIT) protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D Jden_0659 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Jden_0660 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Jden_1579 conserved hypothetical protein
C 00240 Pyrimidine metabolism [PATH:jde00240]
D Jden_1321 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Jden_1322 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Jden_1325 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Jden_1324 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Jden_1463 dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D Jden_2425 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Jden_1320 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Jden_1006 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Jden_0976 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Jden_0846 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Jden_1132 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Jden_1271 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Jden_0450 uridine kinase-like protein K00876 udk; uridine kinase [EC:2.7.1.48]
D Jden_0697 5'-Nucleotidase domain protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Jden_2424 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D Jden_0356 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Jden_1326 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Jden_0828 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Jden_2207 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Jden_2441 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Jden_1752 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Jden_1751 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Jden_2194 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Jden_1410 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Jden_0829 pyrimidine-nucleoside phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D Jden_1574 Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D Jden_1030 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:jde00250]
D Jden_2094 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Jden_1608 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Jden_1152 fumarate lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D Jden_1117 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Jden_1118 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Jden_2416 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Jden_2476 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Jden_1325 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Jden_1219 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Jden_1220 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Jden_2359 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Jden_1484 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1487 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1321 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Jden_1322 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Jden_2410 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Jden_0623 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Jden_2352 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:jde00260]
D Jden_0419 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Jden_0420 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Jden_1790 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Jden_1788 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Jden_1789 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Jden_0694 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Jden_1457 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Jden_2086 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Jden_1058 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Jden_1990 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Jden_1168 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_2363 Sarcosine oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1]
D Jden_1894 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Jden_1217 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Jden_1216 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:jde00270]
D Jden_0951 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Jden_0952 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Jden_2509 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Jden_1418 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Jden_0189 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Jden_0200 Methionine synthase vitamin-B12 independent K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Jden_1315 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Jden_1078 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Jden_1837 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Jden_0419 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Jden_0420 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Jden_1790 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Jden_1788 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Jden_2112 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Jden_1681 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Jden_2111 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Jden_2393 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D Jden_1383 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_1703 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_0631 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Jden_1053 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Jden_0688 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Jden_1058 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Jden_1990 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:jde00280]
D Jden_1383 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_1703 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_2468 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Jden_2467 Transketolase central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Jden_2466 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_1394 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Jden_0845 Carbamoyl-phosphate synthase L chain ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D Jden_0850 carboxyl transferase K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:jde00290]
D Jden_1894 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Jden_1704 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Jden_1710 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Jden_1709 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Jden_1708 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Jden_1711 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Jden_1936 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Jden_1383 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_1703 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_1540 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Jden_1702 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:jde00300]
D Jden_1790 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Jden_0419 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Jden_0420 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Jden_1032 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Jden_1188 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Jden_1027 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Jden_0804 transferase hexapeptide repeat containing protein K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Jden_1114 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Jden_0805 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Jden_1049 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Jden_1792 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Jden_2537 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Jden_2549 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Jden_1069 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Jden_1070 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:jde00310]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:jde00220]
D Jden_1115 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Jden_1117 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Jden_1118 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Jden_0146 Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D Jden_2410 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Jden_1484 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1487 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1321 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Jden_1322 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Jden_2359 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Jden_0489 GCN5-related N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D Jden_1112 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Jden_1113 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Jden_1111 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Jden_1114 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:jde00330]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Jden_0968 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Jden_1649 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Jden_1645 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:jde00340]
D Jden_1309 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Jden_1310 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D Jden_1211 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D Jden_1096 bifunctional HisA/TrpF protein K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D Jden_1095 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Jden_1208 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Jden_1093 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Jden_1092 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_2470 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_1814 histidinol-phosphate phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D Jden_1089 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:jde00350]
D Jden_1092 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_2470 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_1798 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:jde00360]
D Jden_1092 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_2470 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_1587 NADH:flavin oxidoreductase/NADH oxidase K10797 enr; 2-enoate reductase [EC:1.3.1.31]
D Jden_1142 Rieske (2Fe-2S) domain protein K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D Jden_0679 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:jde00380]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Jden_1101 Catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:jde00400]
D Jden_0423 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Jden_1437 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Jden_1334 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Jden_1333 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Jden_1335 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Jden_1812 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Jden_1336 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Jden_1212 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Jden_1444 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Jden_0894 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Jden_1096 bifunctional HisA/TrpF protein K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D Jden_1215 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Jden_1217 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Jden_1216 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Jden_0958 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D Jden_0799 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Jden_0798 Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D Jden_1092 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_2470 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:jde00410]
D Jden_2095 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Jden_2096 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Jden_2376 acyl-CoA oxidase domain protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
C 00430 Taurine and hypotaurine metabolism [PATH:jde00430]
D Jden_1608 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Jden_0643 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Jden_0642 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:jde00450]
D Jden_1681 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Jden_2509 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Jden_1418 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Jden_0189 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Jden_0200 Methionine synthase vitamin-B12 independent K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Jden_1144 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Jden_2547 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Jden_0659 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Jden_0660 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Jden_1957 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:jde00460]
D Jden_0198 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0471 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0472 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1770 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_2534 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1754 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Jden_1879 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Jden_0694 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:jde00470]
D Jden_0627 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Jden_1680 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_2550 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_2410 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Jden_0885 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Jden_1072 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Jden_1049 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Jden_1792 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Jden_2537 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:jde00480]
D Jden_0633 glutamate--cysteine ligase GCS2 K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D Jden_0809 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Jden_1466 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Jden_0943 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Jden_1627 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Jden_0685 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Jden_1948 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Jden_1262 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Jden_1585 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Jden_2478 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:jde00520]
D Jden_0939 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Jden_1943 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Jden_1684 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Jden_0567 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Jden_1381 Chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D Jden_0232 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Jden_0226 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Jden_0619 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Jden_0237 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Jden_0623 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Jden_0744 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Jden_0370 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Jden_1993 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Jden_0364 Alpha-N-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D Jden_0515 Alpha-N-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D Jden_1928 Carbohydrate-binding CenC domain protein K15921 xynD; arabinoxylan arabinofuranohydrolase [EC:3.2.1.55]
D Jden_2398 Xylan 1,4-beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Jden_0238 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_1441 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_1492 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D Jden_0258 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Jden_1273 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Jden_0034 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Jden_2211 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Jden_2212 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Jden_2268 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Jden_2533 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Jden_0834 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Jden_1856 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Jden_0822 Mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Jden_1172 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00541 Biosynthesis of various nucleotide sugars [PATH:jde00541]
D Jden_1943 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Jden_0843 N-acetylneuraminate synthase K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]
D Jden_1273 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Jden_0034 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Jden_1863 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Jden_0822 Mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:jde00515]
D Jden_1964 glycosyl transferase family 39 K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:jde00514]
D Jden_1964 glycosyl transferase family 39 K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:jde00511]
D Jden_0232 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Jden_1756 Beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
D Jden_1765 conserved hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:jde00542]
D Jden_1782 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00550 Peptidoglycan biosynthesis [PATH:jde00550]
D Jden_1684 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Jden_0567 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Jden_1075 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Jden_1072 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Jden_1069 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Jden_1680 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_2550 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_1070 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Jden_1538 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Jden_1194 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Jden_1071 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Jden_1074 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Jden_0173 cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1073 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1068 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Jden_0172 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A
D Jden_2108 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:jde00552]
D Jden_1194 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Jden_1782 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Jden_1847 glycosyl transferase family 2 K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D Jden_2257 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Jden_1795 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K18704 tarL; CDP-ribitol ribitolphosphotransferase / teichoic acid ribitol-phosphate polymerase [EC:2.7.8.14 2.7.8.47]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
D Jden_1782 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00543 Exopolysaccharide biosynthesis [PATH:jde00543]
D Jden_1782 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Jden_0951 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Jden_0838 glycosyl transferase family 2 K16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:jde00730]
D Jden_1183 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Jden_1454 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_1722 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_1399 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Jden_1181 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Jden_1182 Thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Jden_1678 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Jden_0231 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Jden_1813 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Jden_0608 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:jde00740]
D Jden_0682 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Jden_0680 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Jden_0995 CMP/dCMP deaminase zinc-binding K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Jden_0683 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Jden_0681 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Jden_1022 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Jden_1276 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D Jden_1181 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
C 00750 Vitamin B6 metabolism [PATH:jde00750]
D Jden_0186 phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D Jden_1990 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Jden_1789 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Jden_1600 pyridoxine biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D Jden_1601 SNO glutamine amidotransferase K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:jde00760]
D Jden_2094 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Jden_1458 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Jden_2093 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Jden_0882 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Jden_0835 purine nucleotide phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Jden_0697 5'-Nucleotidase domain protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Jden_2424 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D Jden_1643 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Jden_1488 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Jden_1036 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D Jden_1959 isochorismatase hydrolase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D Jden_1125 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Jden_2265 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Jden_2266 NAD(P)(+) transhydrogenase (AB-specific) K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:jde00770]
D Jden_1710 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Jden_1709 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Jden_1708 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Jden_1711 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Jden_1936 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Jden_1489 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Jden_2096 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Jden_0622 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D Jden_1316 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Jden_1671 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Jden_1232 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Jden_0624 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Jden_1383 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_1703 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_2095 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:jde00780]
D Jden_1518 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Jden_2379 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Jden_0851 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:jde00785]
D Jden_1480 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Jden_1481 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Jden_1701 biotin/lipoate A/B protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_1512 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Jden_1476 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Jden_1806 2-oxoglutarate dehydrogenase, E1 subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D Jden_2468 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Jden_2467 Transketolase central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Jden_2466 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
C 00790 Folate biosynthesis [PATH:jde00790]
D Jden_2103 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Jden_0807 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Jden_2102 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Jden_1031 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Jden_0971 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Jden_0682 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Jden_0168 glutamine amidotransferase of anthranilate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D Jden_1382 Chorismate binding-like protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D Jden_0093 ExsB family protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Jden_1242 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Jden_1240 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Jden_1241 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Jden_1239 molybdopterin binding domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Jden_1968 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:jde00670]
D Jden_1031 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Jden_0695 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Jden_0694 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Jden_0677 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Jden_0678 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Jden_1418 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Jden_1030 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Jden_0690 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D Jden_0190 Methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Jden_1969 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D Jden_1315 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Jden_1837 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:jde00860]
D Jden_1688 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Jden_2484 Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Jden_2495 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Jden_2494 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Jden_2492 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Jden_2199 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Jden_2493 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Jden_2485 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Jden_0573 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D Jden_2486 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D Jden_1886 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Jden_1885 Chlorite dismutase K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]
D Jden_0658 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D Jden_2200 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Jden_0047 Radical SAM domain protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D Jden_1265 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Jden_1135 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Jden_1087 pyridoxamine 5'-phosphate oxidase-related FMN-binding K23825 K23825; F420H(2)-dependent biliverdin reductase [EC:1.3.98.-]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:jde00130]
D Jden_0537 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Jden_0536 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D Jden_0534 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D Jden_0533 Mandelate racemase/muconate lactonizing protein K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D Jden_0528 AMP-dependent synthetase and ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D Jden_0531 naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D Jden_0527 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Jden_2263 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Jden_0098 NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:jde00900]
D Jden_1399 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Jden_1011 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Jden_2075 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Jden_2074 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Jden_1013 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Jden_0747 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_0343 isopentenyl-diphosphate delta-isomerase, type 1 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Jden_0342 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Jden_1430 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Jden_1887 undecaprenyl diphosphate synthase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D Jden_1538 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:jde00906]
D Jden_0341 Squalene/phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:jde00907]
D Jden_1394 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Jden_1264 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D Jden_1863 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D Jden_0536 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D Jden_1863 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:jde00946]
D Jden_0198 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0471 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0472 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1770 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_2534 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1754 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Jden_1879 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D Jden_1761 Acetyl xylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
D Jden_2403 Acetyl xylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
C 00332 Carbapenem biosynthesis [PATH:jde00332]
D Jden_1649 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Jden_1645 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:jde00261]
D Jden_0659 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Jden_0660 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Jden_0419 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Jden_0420 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Jden_1032 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Jden_1188 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Jden_1027 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:jde00521]
D Jden_0238 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_1441 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_0258 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Jden_2528 inositol 1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Jden_1412 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Jden_1863 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Jden_0238 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D Jden_1441 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:jde00525]
D Jden_1863 NAD-dependent epimerase/dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Jden_1355 ribokinase family sugar kinase K19978 acbK; acarbose 7IV-phosphotransferase [EC:2.7.1.187]
C 00401 Novobiocin biosynthesis [PATH:jde00401]
D Jden_0799 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Jden_1092 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_2470 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Jden_1212 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Jden_1515 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Jden_2379 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:jde00998]
D Jden_1517 phosphopantetheine-binding K02078 acpP; acyl carrier protein
D Jden_2538 Pyridoxal-5'-phosphate-dependent protein beta subunit K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:jde00999]
D Jden_1315 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Jden_0198 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0471 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_0472 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1770 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_2534 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Jden_1754 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Jden_1879 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:jde00997]
D Jden_2538 Pyridoxal-5'-phosphate-dependent protein beta subunit K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
D Jden_1430 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:jde00362]
D Jden_1394 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Jden_0306 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Jden_0679 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:jde00625]
D Jden_1798 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Jden_1965 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D Jden_0306 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation
C 00622 Xylene degradation [PATH:jde00622]
D Jden_0306 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D Jden_1394 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
D Jden_0306 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:jde00626]
D Jden_1798 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation [PATH:jde00984]
D Jden_1394 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Jden_0142 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:jde03020]
D Jden_0580 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Jden_0581 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Jden_0613 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Jden_1317 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D Jden_2049 helicase domain protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:jde03010]
D Jden_R0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0032 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0057 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0079 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0033 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0056 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0069 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0078 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0021 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0022 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0034 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0035 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0065 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0066 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0067 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0068 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0077 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_1229 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1
D Jden_1004 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Jden_0593 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Jden_1354 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Jden_0604 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Jden_2525 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Jden_0583 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Jden_0601 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Jden_0618 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Jden_0586 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Jden_0612 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Jden_0582 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Jden_0611 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Jden_0069 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Jden_0600 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Jden_1024 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Jden_0985 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Jden_0596 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Jden_2523 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Jden_0591 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Jden_1556 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Jden_0577 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Jden_0590 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Jden_0587 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Jden_0588 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D Jden_0599 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Jden_0602 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Jden_2522 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Jden_0578 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Jden_0576 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Jden_0579 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Jden_0617 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Jden_0597 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Jden_0606 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Jden_0594 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Jden_0614 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Jden_0603 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Jden_0989 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Jden_1105 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Jden_1652 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Jden_0592 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Jden_0589 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D Jden_0598 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Jden_1941 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Jden_1651 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Jden_1676 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Jden_0595 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Jden_0605 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Jden_1786 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Jden_1667 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Jden_2558 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Jden_1104 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Jden_0071 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Jden_0610 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:jde00970]
D Jden_R0002 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Jden_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Jden_R0050 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Jden_R0007 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0008 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0058 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Jden_R0049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Jden_R0073 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Jden_R0074 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Jden_R0042 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Jden_R0053 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Jden_R0060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Jden_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Jden_R0052 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Jden_R0072 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Jden_R0031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0043 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0080 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0030 tRNA-His K14226 tRNA-His; tRNA His
D Jden_R0001 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Jden_R0004 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0059 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0027 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Jden_R0028 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Jden_R0071 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Jden_R0016 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0023 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0075 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Jden_R0012 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Jden_R0013 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Jden_R0039 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Jden_R0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0009 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0063 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0064 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0017 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Jden_R0018 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Jden_R0014 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Jden_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val
D Jden_R0044 tRNA-Val K14237 tRNA-Val; tRNA Val
D Jden_R0046 tRNA-Val K14237 tRNA-Val; tRNA Val
D Jden_1688 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Jden_1714 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Jden_1713 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Jden_1715 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Jden_1351 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Jden_1359 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Jden_1532 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Jden_1378 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Jden_0265 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Jden_2068 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Jden_1957 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Jden_1313 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Jden_0963 tRNA synthetase valyl/leucyl anticodon-binding K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Jden_1568 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Jden_0970 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Jden_2092 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Jden_1793 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Jden_1015 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Jden_1360 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Jden_1108 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Jden_1109 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Jden_1120 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Jden_0815 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes [PATH:jde03008]
D Jden_1666 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Jden_0907 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:jde03060]
D Jden_0607 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Jden_0574 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Jden_1259 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Jden_1366 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Jden_1365 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Jden_1367 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Jden_2555 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Jden_1822 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Jden_0983 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Jden_R0011 ffs; SRP RNA; RNA component of signal recognitionparti cle K01983 ffs; signal recognition particle 4.5S RNA
D Jden_0979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Jden_1290 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Jden_0814 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D Jden_1291 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D Jden_0990 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Jden_1083 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
D Jden_2463 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K04079 HSP90A; molecular chaperone HtpG
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:jde04122]
D Jden_1454 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_1722 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_0631 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Jden_0094 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Jden_1455 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Jden_1721 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Jden_1241 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Jden_1242 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Jden_1243 hypothetical protein K03636 moaD; sulfur-carrier protein
D Jden_1246 UBA/THIF-type NAD/FAD binding protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D Jden_1240 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
C 03050 Proteasome [PATH:jde03050]
D Jden_1201 AAA ATPase central domain protein K13527 mpa; proteasome-associated ATPase
D Jden_1205 20S proteasome A and B subunits K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Jden_1204 20S proteasome A and B subunits K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:jde03018]
D Jden_1653 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Jden_1924 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Jden_1025 guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Jden_1307 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Jden_1091 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Jden_1787 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Jden_1043 RNA binding metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Jden_1033 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Jden_0349 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Jden_2055 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Jden_2235 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Jden_2542 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:jde03030]
D Jden_0640 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1624 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1086 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Jden_0414 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Jden_2193 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Jden_1560 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Jden_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Jden_2155 DnaB domain protein helicase domain protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Jden_2295 DnaB domain protein helicase domain protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Jden_2519 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Jden_1522 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Jden_0930 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2146 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2286 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2524 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_0905 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Jden_0991 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Jden_1226 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Jden_1716 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:jde03410]
D Jden_0437 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Jden_0087 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Jden_0490 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Jden_0157 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D Jden_1665 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Jden_0948 DNA glycosylase/AP lyase, H2TH DNA-binding K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Jden_1038 Formamidopyrimidine-DNA glycosylase catalytic domain protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Jden_0698 exodeoxyribonuclease III Xth K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D Jden_2428 exodeoxyribonuclease III Xth K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D Jden_1226 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Jden_1716 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:jde03420]
D Jden_1935 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Jden_1251 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Jden_1247 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Jden_1252 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Jden_0670 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0712 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0715 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_1226 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Jden_1716 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Jden_2049 helicase domain protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:jde03430]
D Jden_0670 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0712 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0715 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0746 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Jden_0745 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Jden_0930 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2146 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2286 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2524 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_1086 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Jden_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Jden_0414 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Jden_1560 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Jden_2193 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Jden_0640 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1624 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1716 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:jde03440]
D Jden_0930 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2146 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2286 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2524 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Jden_1539 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Jden_0415 recombination protein RecR K06187 recR; recombination protein RecR
D Jden_1041 recA protein K03553 recA; recombination protein RecA
D Jden_1226 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Jden_1369 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Jden_1368 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Jden_1370 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Jden_1674 DEAD/DEAH box helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Jden_1086 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Jden_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Jden_0414 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Jden_1560 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Jden_2193 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Jden_0640 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1624 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1314 Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:jde03250]
D Jden_0164 Peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus and Alphavirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03273 Virion - Lassa virus and SFTS virus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:jde02010]
D Jden_2354 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Jden_2355 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Jden_2356 sulfate ABC transporter, inner membrane subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Jden_2357 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Jden_1853 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Jden_1852 NifC-like ABC-type porter K02018 modB; molybdate transport system permease protein
D Jden_1851 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Jden_0314 ABC transporter, periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D Jden_0315 binding-protein-dependent transport systems inner membrane component K02063 thiP; thiamine transport system permease protein
D Jden_0316 ABC transporter related K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D Jden_1609 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D Jden_1610 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D Jden_1611 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D Jden_2261 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Jden_2259 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Jden_2260 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Jden_2258 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Jden_2065 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Jden_1527 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Jden_1526 Fructose-bisphosphate aldolase K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Jden_1525 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Jden_1759 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Jden_2072 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Jden_1758 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Jden_2071 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Jden_1757 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Jden_2070 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Jden_0267 extracellular solute-binding protein family 1 K10232 aglE; alpha-glucoside transport system substrate-binding protein
D Jden_0268 binding-protein-dependent transport systems inner membrane component K10233 aglF; alpha-glucoside transport system permease protein
D Jden_0269 binding-protein-dependent transport systems inner membrane component K10234 aglG; alpha-glucoside transport system permease protein
D Jden_1769 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Jden_2399 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Jden_1768 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Jden_2401 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Jden_1767 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Jden_2400 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Jden_1882 extracellular solute-binding protein family 1 K10240 cebE; cellobiose transport system substrate-binding protein
D Jden_1881 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein
D Jden_1880 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D Jden_0234 extracellular solute-binding protein family 1 K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein
D Jden_0235 binding-protein-dependent transport systems inner membrane component K17330 dasB; N,N'-diacetylchitobiose transport system permease protein
D Jden_0236 binding-protein-dependent transport systems inner membrane component K17331 dasC; N,N'-diacetylchitobiose transport system permease protein
D Jden_0499 multiple sugar transport system (multiple sugar-binding protein) K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Jden_0502 ABC transporter sugar-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Jden_1960 xylose ABC transporter, substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Jden_0504 Monosaccharide-transporting ATPase K10547 gguB; putative multiple sugar transport system permease protein
D Jden_0503 ABC transporter related K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Jden_0824 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Jden_0826 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Jden_0827 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Jden_0825 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Jden_0278 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D Jden_0280 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D Jden_0281 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D Jden_0277 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Jden_0279 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Jden_0692 ABC transporter related K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D Jden_2244 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D Jden_2242 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D Jden_2243 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D Jden_2082 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Jden_2081 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Jden_2080 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Jden_2079 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Jden_1593 extracellular solute-binding protein family 3 K10005 gluB; glutamate transport system substrate-binding protein
D Jden_1592 polar amino acid ABC transporter, inner membrane subunit K10006 gluC; glutamate transport system permease protein
D Jden_1591 polar amino acid ABC transporter, inner membrane subunit K10007 gluD; glutamate transport system permease protein
D Jden_1594 ABC transporter related K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D Jden_0411 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Jden_0413 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Jden_0412 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Jden_0785 extracellular solute-binding protein family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D Jden_0786 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein
D Jden_0787 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein
D Jden_0428 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D Jden_0425 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D Jden_0426 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein
D Jden_0427 ABC transporter related K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D Jden_1909 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D Jden_1910 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein
D Jden_1908 ABC transporter related K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D Jden_0297 periplasmic solute binding protein K11601 mntC; manganese transport system substrate-binding protein
D Jden_0299 ABC-3 protein K11602 mntB; manganese transport system permease protein
D Jden_0298 ABC transporter related K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D Jden_1533 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Jden_1535 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Jden_1534 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Jden_1159 BioY protein K03523 bioY; biotin transport system substrate-specific component
D Jden_1157 cobalt transport protein K16783 bioN; biotin transport system permease protein
D Jden_1158 ABC transporter related K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D Jden_0091 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Jden_0132 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Jden_1846 ABC-2 type transporter K09692 tagG; teichoic acid transport system permease protein
D Jden_1845 ABC transporter related K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D Jden_1744 protein of unknown function DUF214 K09813 hrtB; hemin transport system permease protein
D Jden_1745 ABC transporter related K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D Jden_0755 ABC transporter related K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Jden_0865 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Jden_0864 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Jden_0347 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Jden_0348 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Jden_1657 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D Jden_1656 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D Jden_0889 ABC transporter related K18230 tylC; macrolide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:jde02060]
D Jden_0068 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Jden_0937 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Jden_0067 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Jden_0939 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Jden_0066 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Jden_0065 putative PTS IIA-like nitrogen-regulatory protein PtsN K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D Jden_0064 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:jde03070]
D Jden_1366 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Jden_1365 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Jden_0574 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Jden_1259 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Jden_0607 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Jden_1367 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Jden_2555 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Jden_1822 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Jden_0979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Jden_0983 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Jden_1290 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Jden_0814 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D Jden_1291 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:jde02020]
D Jden_2084 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Jden_2083 two component transcriptional regulator, winged helix family K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Jden_2082 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Jden_2035 flagellin domain protein K02406 fliC; flagellin
D Jden_2036 flagellin domain protein K02406 fliC; flagellin
D Jden_2037 flagellin domain protein K02406 fliC; flagellin
D Jden_2038 flagellin domain protein K02406 fliC; flagellin
D Jden_1002 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Jden_2039 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D Jden_2017 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Jden_1135 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Jden_0535 2-alkenal reductase K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Jden_0813 peptidase S1 and S6 chymotrypsin/Hap K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Jden_1826 histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D Jden_1827 two component transcriptional regulator, winged helix family K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D Jden_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Jden_0297 periplasmic solute binding protein K11601 mntC; manganese transport system substrate-binding protein
D Jden_0298 ABC transporter related K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D Jden_0299 ABC-3 protein K11602 mntB; manganese transport system permease protein
D Jden_0204 HpcH/HpaI aldolase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Jden_1235 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Jden_1236 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Jden_1238 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Jden_1237 nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D Jden_2005 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Jden_0117 histidine kinase dimerisation and phosphoacceptor region K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Jden_0118 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D Jden_1658 GAF sensor signal transduction histidine kinase K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D Jden_1659 two component transcriptional regulator, LuxR family K07695 devR; two-component system, NarL family, response regulator DevR
D Jden_0859 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D Jden_0856 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Jden_2224 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Jden_0857 type II secretion system protein K12510 tadB; tight adherence protein B
D Jden_2223 type II secretion system protein K12510 tadB; tight adherence protein B
D Jden_0858 type II secretion system protein K12511 tadC; tight adherence protein C
D Jden_0982 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D Jden_0981 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D Jden_1484 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1487 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_1344 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA
D Jden_2001 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Jden_0359 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0360 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0421 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0673 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Jden_1961 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_1995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_2472 methyl-accepting chemotaxis sensory transducer with GAF sensor K03406 mcp; methyl-accepting chemotaxis protein
D Jden_2003 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Jden_2004 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Jden_1998 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_2000 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_2002 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Jden_0435 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Jden_1654 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Jden_1655 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Jden_0037 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Jden_0179 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Jden_0538 glycoside hydrolase family 6 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Jden_0734 glycoside hydrolase family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Jden_0735 glycoside hydrolase family 6 K19668 CBH2; cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04082 Neuroactive ligand signaling
C 04081 Hormone signaling
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome [PATH:jde04142]
D Jden_0232 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Jden_1756 Beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C 04146 Peroxisome [PATH:jde04146]
D Jden_2376 acyl-CoA oxidase domain protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Jden_0962 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1327 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1442 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_0685 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Jden_1101 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Jden_1450 Superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:jde02024]
D Jden_1212 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Jden_0423 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Jden_1437 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Jden_0962 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1327 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1442 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_0435 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Jden_2228 glycoside hydrolase family 5 K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Jden_2229 glycoside hydrolase family 5 K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Jden_0680 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Jden_0995 CMP/dCMP deaminase zinc-binding K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Jden_0241 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Jden_1933 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Jden_0242 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Jden_1932 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Jden_0243 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Jden_1931 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Jden_0244 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Jden_0788 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Jden_1930 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Jden_2555 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Jden_0574 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Jden_1259 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Jden_0607 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Jden_1367 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Jden_1822 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Jden_0979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Jden_0983 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:jde02030]
D Jden_0359 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0360 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0421 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0673 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Jden_1961 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_1995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_2472 methyl-accepting chemotaxis sensory transducer with GAF sensor K03406 mcp; methyl-accepting chemotaxis protein
D Jden_2004 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Jden_2003 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Jden_1998 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_2000 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_1999 hypothetical protein K03409 cheX; chemotaxis protein CheX
D Jden_2002 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Jden_2001 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Jden_2026 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Jden_2014 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Jden_2013 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Jden_2017 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Jden_2016 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:jde02040]
D Jden_2028 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Jden_2027 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Jden_2026 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Jden_2025 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D Jden_2024 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Jden_2023 flagellar FliJ protein K02413 fliJ; flagellar protein FliJ
D Jden_2021 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK
D Jden_2015 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Jden_2014 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Jden_2013 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Jden_2012 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Jden_2011 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Jden_2010 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Jden_2009 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Jden_2007 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Jden_2008 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB
D Jden_2030 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Jden_2029 flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D Jden_2020 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Jden_2019 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Jden_2041 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Jden_2042 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Jden_2035 flagellin domain protein K02406 fliC; flagellin
D Jden_2036 flagellin domain protein K02406 fliC; flagellin
D Jden_2037 flagellin domain protein K02406 fliC; flagellin
D Jden_2038 flagellin domain protein K02406 fliC; flagellin
D Jden_2034 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Jden_2033 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Jden_2017 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Jden_2016 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Jden_1427 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D Jden_1002 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Jden_2039 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Jden_1924 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04981 Folate transport and metabolism [PATH:jde04981]
D Jden_1969 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D Jden_1031 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Jden_0694 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Jden_1030 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Jden_1418 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04980 Cobalamin transport and metabolism
D Jden_1418 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
C 04382 Cornified envelope formation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
D Jden_1068 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:jde01502]
D Jden_1680 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_2550 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_0627 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Jden_1070 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Jden_1071 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Jden_1074 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D Jden_0164 Peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:jde01000]
C 01001 Protein kinases [BR:jde01001]
D Jden_0170 serine/threonine protein kinase with PASTA sensor(s) K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Jden_0171 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Jden_1432 serine/threonine protein kinase with PASTA sensor(s) K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Jden_2546 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Jden_0038 capsular exopolysaccharide family K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Jden_2084 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Jden_1826 histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D Jden_2052 histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Jden_0117 histidine kinase dimerisation and phosphoacceptor region K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Jden_1658 GAF sensor signal transduction histidine kinase K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D Jden_2004 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Jden_1884 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:jde01009]
D Jden_1837 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Jden_2463 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K04079 HSP90A; molecular chaperone HtpG
D Jden_0174 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Jden_0456 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Jden_1168 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:jde01002]
D Jden_1083 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Jden_1340 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Jden_1230 Pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D Jden_0120 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Jden_0650 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Jden_1987 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Jden_2110 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Jden_2429 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Jden_2352 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Jden_1219 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Jden_0623 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Jden_1901 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124]
D Jden_1468 Abortive infection protein K07052 K07052; CAAX protease family protein
D Jden_0943 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Jden_1627 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Jden_1191 Peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D Jden_0946 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D Jden_0809 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Jden_1466 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Jden_0805 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Jden_0906 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Jden_1491 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Jden_1739 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Jden_0703 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Jden_2104 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Jden_0558 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Jden_0535 2-alkenal reductase K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Jden_0813 peptidase S1 and S6 chymotrypsin/Hap K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Jden_1717 Prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D Jden_2108 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Jden_0955 Endopeptidase Clp K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Jden_0956 Endopeptidase Clp K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Jden_0723 conserved hypothetical protein K07177 K07177; Lon-like protease
D Jden_1054 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Jden_0990 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Jden_1205 20S proteasome A and B subunits K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Jden_1204 20S proteasome A and B subunits K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 01003 Glycosyltransferases [BR:jde01003]
D Jden_1295 glycosyl transferase family 2 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Jden_1964 glycosyl transferase family 39 K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D Jden_0448 glycosyl transferase group 1 K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D Jden_1374 glycosyl transferase group 1 K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D Jden_1173 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Jden_0173 cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1073 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1782 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Jden_0838 glycosyl transferase family 2 K16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]
D Jden_2063 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:jde01005]
D Jden_1782 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:jde01011]
D Jden_1684 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Jden_0567 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Jden_1075 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Jden_1072 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Jden_1069 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Jden_1680 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_2550 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Jden_0627 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Jden_0885 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Jden_1071 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Jden_1074 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Jden_1194 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Jden_1130 virulence factor MVIN family protein K03980 murJ; putative peptidoglycan lipid II flippase
D Jden_2545 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Jden_1068 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Jden_0172 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A
D Jden_2108 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Jden_0173 cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1073 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1987 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Jden_2110 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Jden_2429 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Jden_1349 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:jde01004]
D Jden_1515 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Jden_0108 Beta-ketoacyl-acyl-carrier-protein synthase I K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Jden_1516 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Jden_1518 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Jden_2379 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Jden_1807 conserved hypothetical protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Jden_0935 acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D Jden_1165 short-chain dehydrogenase/reductase SDR K11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]
D Jden_2230 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Jden_0962 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1327 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1442 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1439 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:jde01006]
D Jden_1430 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Jden_0342 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Jden_1887 undecaprenyl diphosphate synthase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D Jden_1538 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Jden_0341 Squalene/phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Jden_1048 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Jden_0527 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Jden_1265 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:jde01007]
D Jden_1688 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Jden_1120 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Jden_0815 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Jden_2068 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Jden_1793 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Jden_1957 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Jden_0970 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Jden_0963 tRNA synthetase valyl/leucyl anticodon-binding K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Jden_1568 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Jden_2092 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Jden_1359 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Jden_1360 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Jden_1532 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Jden_0265 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Jden_1015 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Jden_1378 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Jden_1351 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Jden_1108 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Jden_1109 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Jden_1092 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_2470 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Jden_2509 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Jden_1114 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Jden_2495 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Jden_1383 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_1703 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Jden_1990 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:jde00194]
D Jden_1773 H+transporting two-sector ATPase delta/epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Jden_1774 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Jden_1775 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Jden_1776 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Jden_1777 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Jden_1778 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Jden_1779 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Jden_1780 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:jde03000]
D Jden_0158 transcriptional regulator, ArgP, LysR family K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D Jden_0063 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Jden_2073 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Jden_2404 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Jden_1599 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Jden_0106 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Jden_0182 transcriptional regulator, LuxR family K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D Jden_1149 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Jden_0352 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D Jden_0637 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D Jden_1536 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Jden_1102 ferric uptake regulator, Fur family K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D Jden_2210 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Jden_0435 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Jden_0916 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Jden_1939 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Jden_0727 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Jden_0777 transcriptional regulator, ArsR family K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D Jden_0451 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Jden_1037 transcriptional regulator, XRE family K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D Jden_1989 iron (metal) dependent repressor, DtxR family K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D Jden_1570 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Jden_0851 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Jden_2481 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Jden_0636 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Jden_1861 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Jden_1877 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Jden_2151 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Jden_2291 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Jden_0717 transcription factor WhiB K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Jden_0918 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Jden_2499 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Jden_2551 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Jden_2077 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Jden_1116 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D Jden_1550 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Jden_0488 transcriptional regulator, DeoR family K05346 deoR; deoxyribonucleoside regulator
D Jden_1326 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Jden_1082 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Jden_1056 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D Jden_1065 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:jde03021]
D Jden_2049 helicase domain protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D Jden_0613 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Jden_0580 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Jden_0581 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Jden_1317 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Jden_1427 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D Jden_1810 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Jden_2122 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Jden_1002 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Jden_2039 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D Jden_1018 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Jden_1328 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Jden_0575 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D Jden_1082 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Jden_1893 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Jden_1787 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:jde03019]
D Jden_1653 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Jden_1666 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Jden_1033 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Jden_1043 RNA binding metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Jden_0907 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Jden_1307 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Jden_1091 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Jden_1924 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Jden_1025 guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Jden_1787 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Jden_0349 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Jden_2055 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Jden_2235 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Jden_2005 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Jden_1253 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D Jden_1292 DEAD/DEAH box helicase domain protein K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D Jden_0240 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:jde03011]
D Jden_1229 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1
D Jden_1004 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Jden_0593 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Jden_1354 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Jden_0604 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Jden_2525 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Jden_0583 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Jden_0601 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Jden_0618 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Jden_0586 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Jden_0612 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Jden_0582 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Jden_0611 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Jden_0069 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Jden_0600 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Jden_1024 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Jden_0985 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Jden_0596 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Jden_2523 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Jden_0591 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Jden_1556 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Jden_0577 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Jden_0590 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Jden_0587 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Jden_0588 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D Jden_0599 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Jden_0602 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Jden_2522 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Jden_0578 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Jden_0576 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Jden_0579 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Jden_0617 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Jden_0597 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Jden_0606 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Jden_0594 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Jden_0614 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Jden_0603 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Jden_0989 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Jden_1105 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Jden_1652 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Jden_0592 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Jden_0589 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D Jden_0598 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Jden_1651 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Jden_1676 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Jden_0595 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Jden_0605 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Jden_1786 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Jden_1667 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Jden_2558 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Jden_1104 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Jden_0071 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Jden_0610 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Jden_1941 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Jden_R0021 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0022 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0034 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0035 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0065 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0066 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0067 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0068 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0077 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0032 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0057 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0079 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0033 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0056 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0069 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0078 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:jde03009]
D Jden_1666 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Jden_0907 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Jden_1543 GTP-binding protein Era K03595 era; GTPase
D Jden_1650 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D Jden_1082 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Jden_1018 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Jden_1328 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Jden_0575 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D Jden_1952 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Jden_1312 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Jden_1050 methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Jden_2508 rRNA (guanine-N(2)-)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Jden_1673 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Jden_1548 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Jden_2553 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Jden_1066 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Jden_1963 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Jden_1124 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Jden_2067 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Jden_1009 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Jden_2390 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D Jden_0639 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Jden_1270 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Jden_1084 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Jden_0630 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Jden_1967 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D Jden_0987 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Jden_1653 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Jden_1350 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Jden_1307 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Jden_0231 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Jden_1813 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Jden_1272 small GTP-binding protein K03977 engA; GTPase
D Jden_1051 GTP-binding proten HflX K03665 hflX; GTPase
D Jden_1783 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Jden_1363 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Jden_1020 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Jden_1017 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D Jden_1088 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein
D Jden_1641 iojap-like protein K09710 ybeB; ribosome-associated protein
D Jden_1545 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D Jden_0748 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Jden_1668 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:jde03016]
D Jden_2542 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Jden_1934 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D Jden_1688 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Jden_1015 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Jden_0970 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Jden_1568 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Jden_1957 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Jden_1793 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Jden_2092 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Jden_1359 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Jden_1351 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Jden_1532 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Jden_1378 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Jden_0265 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Jden_2068 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Jden_0963 tRNA synthetase valyl/leucyl anticodon-binding K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Jden_1360 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Jden_1108 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Jden_1109 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Jden_1120 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Jden_0815 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Jden_0447 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Jden_1547 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Jden_1200 tRNA methyltransferase complex GCD14 subunit K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D Jden_0893 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Jden_0615 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Jden_1021 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Jden_1454 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_1722 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_1783 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Jden_1048 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Jden_2557 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Jden_R0045 rnpB; RNA component of RNaseP K01978 rnpB; RNase P catalytic RNA component
D Jden_1392 3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5]
D Jden_0931 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA
D Jden_1696 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Jden_0357 CMP/dCMP deaminase zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Jden_1044 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Jden_0988 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Jden_0473 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Jden_1106 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D Jden_0639 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Jden_1721 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Jden_0094 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Jden_1455 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Jden_0444 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D Jden_0093 ExsB family protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Jden_2106 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Jden_0629 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Jden_0632 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Jden_0628 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Jden_1025 guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:jde03012]
D Jden_1019 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Jden_1103 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Jden_1005 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Jden_0585 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Jden_0584 translation elongation factor G K02355 fusA; elongation factor G
D Jden_1785 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D Jden_1007 ribosome recycling factor K02838 frr; ribosome recycling factor
D Jden_1784 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Jden_1940 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Jden_0609 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Jden_1329 translation elongation factor P K02356 efp; elongation factor P
D Jden_0863 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D Jden_0079 small GTP-binding protein K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:jde03110]
D Jden_2431 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Jden_0449 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Jden_0957 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Jden_2463 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K04079 HSP90A; molecular chaperone HtpG
D Jden_0349 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Jden_2055 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Jden_0351 chaperone DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Jden_1549 chaperone DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Jden_0350 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Jden_0879 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D Jden_0635 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Jden_0898 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Jden_2104 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Jden_1780 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Jden_1170 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A
D Jden_0232 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Jden_0164 Peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Jden_0125 thioredoxin K03671 TXN; thioredoxin
D Jden_0891 thioredoxin K03671 TXN; thioredoxin
D Jden_2548 thioredoxin K03671 TXN; thioredoxin
D Jden_1730 putative thioredoxin domain-containing protein K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:jde04131]
D Jden_0976 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Jden_2346 band 7 protein K07192 FLOT; flotillin
D Jden_1256 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Jden_2086 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Jden_1221 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Jden_2463 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K04079 HSP90A; molecular chaperone HtpG
D Jden_0568 major facilitator superfamily MFS_1 K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:jde04121]
D Jden_1203 protein of unknown function DUF797 K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:jde03051]
D Jden_2463 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K04079 HSP90A; molecular chaperone HtpG
D Jden_1205 20S proteasome A and B subunits K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Jden_1204 20S proteasome A and B subunits K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Jden_1201 AAA ATPase central domain protein K13527 mpa; proteasome-associated ATPase
D Jden_1206 protein of unknown function DUF245 domain protein K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D Jden_1287 putative transcriptional regulator protein K13572 pafB; proteasome accessory factor B
D Jden_1288 conserved hypothetical protein K13573 pafC; proteasome accessory factor C
D Jden_1202 protein of unknown function DUF245 domain protein K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:jde03032]
D Jden_0905 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Jden_2507 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Jden_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Jden_2155 DnaB domain protein helicase domain protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Jden_2295 DnaB domain protein helicase domain protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Jden_2519 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Jden_1522 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Jden_0930 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2146 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2286 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2524 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_1086 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Jden_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Jden_1560 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Jden_2193 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Jden_0640 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1624 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_0414 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Jden_0991 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Jden_1226 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Jden_1716 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Jden_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Jden_1417 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Jden_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Jden_1425 DNA gyrase subunit B domain protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Jden_2197 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:jde03036]
D Jden_1666 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Jden_2346 band 7 protein K07192 FLOT; flotillin
D Jden_2090 hypothetical protein K26249 lsr2; nucleoid-associated protein Lsr2
D Jden_2507 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Jden_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Jden_0902 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D Jden_0158 transcriptional regulator, ArgP, LysR family K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D Jden_0977 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D Jden_1268 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A
D Jden_1269 chromosome segregation and condensation protein, ScpB K06024 scpB; segregation and condensation protein B
D Jden_0864 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Jden_1068 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Jden_1034 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Jden_1076 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ
D Jden_0173 cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1073 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_0865 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Jden_1077 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Jden_1388 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D Jden_1079 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF
D Jden_1267 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Jden_1299 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Jden_2552 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Jden_2551 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Jden_2553 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Jden_1001 integrase family protein K03733 xerC; integrase/recombinase XerC
D Jden_1266 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D Jden_0699 protein of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Jden_1255 protein of unknown function DUF199 K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:jde03400]
D Jden_0290 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Jden_0087 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Jden_0157 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D Jden_0490 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Jden_0437 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Jden_2049 helicase domain protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D Jden_0183 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jden_0837 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jden_1357 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jden_1718 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Jden_1410 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Jden_0402 2OG-Fe(II) oxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D Jden_1665 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Jden_0948 DNA glycosylase/AP lyase, H2TH DNA-binding K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Jden_1038 Formamidopyrimidine-DNA glycosylase catalytic domain protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Jden_0698 exodeoxyribonuclease III Xth K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D Jden_2428 exodeoxyribonuclease III Xth K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D Jden_1716 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Jden_1226 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Jden_1251 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Jden_1247 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Jden_1252 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Jden_0670 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0712 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0715 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Jden_0580 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Jden_0581 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Jden_0613 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Jden_1317 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Jden_1935 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Jden_0746 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Jden_0745 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Jden_1086 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Jden_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Jden_1560 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Jden_2193 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Jden_0640 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_1624 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Jden_0414 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Jden_0930 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2146 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2286 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2524 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_1041 recA protein K03553 recA; recombination protein RecA
D Jden_1369 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Jden_1368 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Jden_1370 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Jden_2149 endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D Jden_2289 endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D Jden_1314 Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Jden_0493 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Jden_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Jden_1674 DEAD/DEAH box helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Jden_1539 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Jden_0415 recombination protein RecR K06187 recR; recombination protein RecR
D Jden_1126 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Jden_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Jden_1417 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Jden_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Jden_1425 DNA gyrase subunit B domain protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Jden_2197 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Jden_2507 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Jden_1091 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Jden_1063 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Jden_1054 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Jden_1186 nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB
D Jden_1187 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Jden_1042 regulatory protein RecX K03565 recX; regulatory protein
D Jden_1052 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Jden_1039 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Jden_2236 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D Jden_1133 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D Jden_1752 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Jden_1751 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:jde03029]
D Jden_1019 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Jden_1103 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Jden_1005 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Jden_0585 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Jden_0584 translation elongation factor G K02355 fusA; elongation factor G
D Jden_1543 GTP-binding protein Era K03595 era; GTPase
D Jden_1120 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Jden_1568 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Jden_1359 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Jden_1532 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Jden_1793 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Jden_1714 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Jden_1713 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Jden_1715 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Jden_0930 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2146 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2286 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_2524 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Jden_0349 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Jden_0350 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Jden_2055 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Jden_0635 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Jden_0898 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Jden_0351 chaperone DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Jden_1549 chaperone DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Jden_1454 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_1722 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_0699 protein of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Jden_1265 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Jden_1135 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Jden_2555 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Jden_2463 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:jde02000]
D Jden_0347 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Jden_0348 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Jden_0194 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Jden_1209 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Jden_1210 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Jden_1231 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Jden_1962 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Jden_1657 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D Jden_1656 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D Jden_0889 ABC transporter related K18230 tylC; macrolide transport system ATP-binding/permease protein
D Jden_1950 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein
D Jden_2354 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Jden_2355 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Jden_2356 sulfate ABC transporter, inner membrane subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Jden_2357 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Jden_1853 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Jden_1852 NifC-like ABC-type porter K02018 modB; molybdate transport system permease protein
D Jden_1851 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Jden_0314 ABC transporter, periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D Jden_0315 binding-protein-dependent transport systems inner membrane component K02063 thiP; thiamine transport system permease protein
D Jden_0316 ABC transporter related K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D Jden_1609 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D Jden_1610 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D Jden_1611 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D Jden_2261 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Jden_2259 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Jden_2260 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Jden_2258 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Jden_2065 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Jden_1527 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Jden_1526 Fructose-bisphosphate aldolase K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Jden_1525 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Jden_1759 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Jden_2072 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Jden_1758 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Jden_2071 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Jden_1757 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Jden_2070 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Jden_0267 extracellular solute-binding protein family 1 K10232 aglE; alpha-glucoside transport system substrate-binding protein
D Jden_0268 binding-protein-dependent transport systems inner membrane component K10233 aglF; alpha-glucoside transport system permease protein
D Jden_0269 binding-protein-dependent transport systems inner membrane component K10234 aglG; alpha-glucoside transport system permease protein
D Jden_1882 extracellular solute-binding protein family 1 K10240 cebE; cellobiose transport system substrate-binding protein
D Jden_1881 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein
D Jden_1880 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D Jden_0234 extracellular solute-binding protein family 1 K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein
D Jden_0235 binding-protein-dependent transport systems inner membrane component K17330 dasB; N,N'-diacetylchitobiose transport system permease protein
D Jden_0236 binding-protein-dependent transport systems inner membrane component K17331 dasC; N,N'-diacetylchitobiose transport system permease protein
D Jden_1769 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Jden_2399 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Jden_1768 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Jden_2401 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Jden_1767 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Jden_2400 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Jden_0692 ABC transporter related K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D Jden_0499 multiple sugar transport system (multiple sugar-binding protein) K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Jden_0502 ABC transporter sugar-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Jden_1960 xylose ABC transporter, substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Jden_0504 Monosaccharide-transporting ATPase K10547 gguB; putative multiple sugar transport system permease protein
D Jden_0503 ABC transporter related K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Jden_0278 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D Jden_0280 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D Jden_0281 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D Jden_0277 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Jden_0279 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Jden_2244 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D Jden_2242 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D Jden_2243 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D Jden_0513 extracellular solute-binding protein family 1 K25062 abnE; arabinooligosaccharide transport system substrate-binding protein
D Jden_0512 binding-protein-dependent transport systems inner membrane component K25063 abnF; arabinooligosaccharide transport system permease protein
D Jden_0511 binding-protein-dependent transport systems inner membrane component K25064 abnJ; arabinooligosaccharide transport system permease protein
D Jden_0824 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Jden_0826 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Jden_0827 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Jden_0825 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Jden_0101 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Jden_0310 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Jden_0381 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Jden_0102 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Jden_0309 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Jden_0379 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Jden_0103 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Jden_0308 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Jden_0380 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Jden_2082 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Jden_2081 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Jden_2080 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Jden_2079 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Jden_1593 extracellular solute-binding protein family 3 K10005 gluB; glutamate transport system substrate-binding protein
D Jden_1592 polar amino acid ABC transporter, inner membrane subunit K10006 gluC; glutamate transport system permease protein
D Jden_1591 polar amino acid ABC transporter, inner membrane subunit K10007 gluD; glutamate transport system permease protein
D Jden_1594 ABC transporter related K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D Jden_0411 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Jden_0413 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Jden_0412 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Jden_0666 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Jden_0961 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Jden_0667 ectoine/hydroxyectoine ABC transporter, permease protein EhuC K02029 ABC.PA.P; polar amino acid transport system permease protein
D Jden_0668 ectoine/hydroxyectoine ABC transporter, permease protein EhuD K02029 ABC.PA.P; polar amino acid transport system permease protein
D Jden_0960 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D Jden_0669 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Jden_0959 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Jden_0785 extracellular solute-binding protein family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D Jden_0786 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein
D Jden_0787 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein
D Jden_0241 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Jden_1933 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Jden_0242 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Jden_1932 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Jden_0243 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Jden_1931 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Jden_0244 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Jden_0788 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Jden_1930 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Jden_1909 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D Jden_1910 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein
D Jden_1908 ABC transporter related K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D Jden_0428 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D Jden_0425 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D Jden_0426 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein
D Jden_0427 ABC transporter related K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D Jden_2366 periplasmic binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D Jden_2368 transport system permease protein K25283 yclO; iron-siderophore transport system permease protein
D Jden_2367 transport system permease protein K25284 yclN; iron-siderophore transport system permease protein
D Jden_2369 ABC transporter related K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D Jden_0967 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Jden_0966 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D Jden_0965 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Jden_1177 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Jden_0297 periplasmic solute binding protein K11601 mntC; manganese transport system substrate-binding protein
D Jden_0299 ABC-3 protein K11602 mntB; manganese transport system permease protein
D Jden_0298 ABC transporter related K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D Jden_1533 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Jden_1535 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Jden_1534 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Jden_1159 BioY protein K03523 bioY; biotin transport system substrate-specific component
D Jden_1157 cobalt transport protein K16783 bioN; biotin transport system permease protein
D Jden_1158 ABC transporter related K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D Jden_0088 YKOF domain protein K24620 ykoF; energy-coupling factor transport system substrate-specific component
D Jden_0091 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Jden_0132 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Jden_0090 ABC transporter related K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Jden_0131 ABC transporter related K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Jden_1420 ABC transporter related K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Jden_0089 conserved hypothetical protein K16925 ykoE; energy-coupling factor transport system permease protein
D Jden_1846 ABC-2 type transporter K09692 tagG; teichoic acid transport system permease protein
D Jden_1845 ABC transporter related K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D Jden_1744 protein of unknown function DUF214 K09813 hrtB; hemin transport system permease protein
D Jden_1745 ABC transporter related K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D Jden_0013 conserved hypothetical protein K25149 narB; polyether ionophore transport system permease protein
D Jden_0014 ABC transporter related K25150 narA; polyether ionophore transport system ATP-binding protein
D Jden_0755 ABC transporter related K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Jden_0865 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Jden_0864 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Jden_0116 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_0229 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_0230 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_0417 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_1137 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_1805 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_1946 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_2511 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Jden_0115 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_0134 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_0221 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_0228 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_0418 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_1138 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_1558 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_1705 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_1804 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_1945 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_2458 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_2512 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Jden_0084 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Jden_0110 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Jden_0219 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Jden_0375 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Jden_0480 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Jden_1875 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Jden_2119 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Jden_0043 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_0083 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_0109 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_0218 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_0374 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_0407 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_0479 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_0791 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_1874 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_2118 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Jden_1143 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Jden_0326 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D Jden_0086 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Jden_2521 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Jden_1233 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Jden_2362 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Jden_0855 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Jden_1569 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D Jden_0051 major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D Jden_0113 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D Jden_0568 major facilitator superfamily MFS_1 K06902 UMF1; MFS transporter, UMF1 family
D Jden_0068 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Jden_0937 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Jden_0067 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Jden_0939 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Jden_0938 phosphotransferase system PTS EIIB protein K02803 nagEb; N-acetylglucosamine PTS system EIIB component [EC:2.7.1.193]
D Jden_0065 putative PTS IIA-like nitrogen-regulatory protein PtsN K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D Jden_0066 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Jden_0974 dihydroxyacetone kinase, phosphotransfer subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D Jden_0486 major intrinsic protein K02440 glpF; glycerol uptake facilitator
D Jden_0980 ammonium transporter K03320 amt; ammonium transporter, Amt family
D Jden_2453 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D Jden_2454 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D Jden_2227 formate/nitrite transporter K02598 nirC; nitrite transporter
D Jden_1972 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D Jden_0940 MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D Jden_1907 magnesium transporter K06213 mgtE; magnesium transporter
D Jden_2017 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Jden_2016 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Jden_0925 Camphor resistance CrcB protein K06199 crcB; fluoride exporter
D Jden_0926 Camphor resistance CrcB protein K06199 crcB; fluoride exporter
D Jden_0148 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_0318 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_0319 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_1544 CBS domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_2370 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_2371 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_2178 phage tail tape measure protein, TP901 family K21449 ata; trimeric autotransporter adhesin
D Jden_1107 amino acid permease-associated region K16237 aroP; aromatic amino acid permease
D Jden_0452 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D Jden_1174 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Jden_1175 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Jden_0022 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D Jden_2262 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter
D Jden_0506 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein
D Jden_0505 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Jden_1405 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Jden_1406 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Jden_1996 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Jden_0078 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D Jden_2465 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D Jden_0368 arsenical-resistance protein K03325 ACR3; arsenite transporter
D Jden_1913 NADH dehydrogenase (quinone) K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D Jden_2439 NADH dehydrogenase (quinone) K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D Jden_1914 NADH-ubiquinone oxidoreductase chain 4L K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D Jden_2438 NADH-ubiquinone oxidoreductase chain 4L K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D Jden_1915 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D Jden_2437 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D Jden_1916 cation antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D Jden_2436 multisubunit Na+/H+ antiporter MnhE subunit-like protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D Jden_1917 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D Jden_2435 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D Jden_1918 Na+/H+ antiporter subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D Jden_2434 monovalent cation/proton antiporter, MnhG/PhaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D Jden_1130 virulence factor MVIN family protein K03980 murJ; putative peptidoglycan lipid II flippase
D Jden_2545 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Jden_0159 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO
D Jden_1401 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D Jden_1400 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D Jden_0254 protein of unknown function DUF125 transmembrane K22736 VIT; vacuolar iron transporter family protein
D Jden_0327 protein of unknown function DUF125 transmembrane K22736 VIT; vacuolar iron transporter family protein
D Jden_1741 protein of unknown function DUF125 transmembrane K22736 VIT; vacuolar iron transporter family protein
D Jden_0173 cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_1073 cell division protein FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D Jden_0522 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D Jden_1235 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Jden_1236 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Jden_1238 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Jden_0038 capsular exopolysaccharide family K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Jden_1598 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Jden_1597 GTP-binding protein HSR1-related K04759 feoB; ferrous iron transport protein B
D Jden_0383 protein of unknown function DUF202 K00389 yidH; inner membrane protein YidH
D Jden_2502 copper resistance protein CopC K07156 copC; copper resistance protein C
C 02044 Secretion system [BR:jde02044]
D Jden_1340 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Jden_1344 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA
D Jden_1347 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D Jden_1345 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D Jden_1339 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Jden_1338 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D Jden_1346 twitching motility protein K02669 pilT; twitching motility protein PilT
D Jden_1808 twitching motility protein K02669 pilT; twitching motility protein PilT
D Jden_0856 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Jden_2224 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Jden_0857 type II secretion system protein K12510 tadB; tight adherence protein B
D Jden_2223 type II secretion system protein K12510 tadB; tight adherence protein B
D Jden_0858 type II secretion system protein K12511 tadC; tight adherence protein C
D Jden_0859 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D Jden_1080 protein of unknown function YGGT K02221 yggT; YggT family protein
D Jden_1562 Helix-hairpin-helix DNA-binding class 1 K02237 comEA; competence protein ComEA
D Jden_1561 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC
D Jden_2007 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Jden_2008 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB
D Jden_2027 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Jden_2025 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D Jden_2024 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Jden_2013 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Jden_2012 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Jden_2011 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Jden_2010 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Jden_2009 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Jden_2491 cell divisionFtsK/SpoIIIE K27086 eccC; ESX secretion system protein EccC
D Jden_2490 protein of unknown function DUF571 K27087 eccD; ESX secretion system protein EccD
D Jden_1822 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Jden_1366 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Jden_0574 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Jden_1365 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Jden_1259 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Jden_0607 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Jden_0983 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Jden_0979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Jden_1367 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Jden_2555 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Jden_1290 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Jden_0814 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D Jden_1291 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:jde02042]
D Jden_0148 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_0318 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_0319 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_1544 CBS domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_2370 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_2371 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Jden_1888 Hly-III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:jde02022]
D Jden_2084 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Jden_2083 two component transcriptional regulator, winged helix family K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Jden_1826 histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D Jden_1827 two component transcriptional regulator, winged helix family K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D Jden_2052 histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Jden_2051 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Jden_0117 histidine kinase dimerisation and phosphoacceptor region K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Jden_0118 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D Jden_1658 GAF sensor signal transduction histidine kinase K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D Jden_1659 two component transcriptional regulator, LuxR family K07695 devR; two-component system, NarL family, response regulator DevR
D Jden_2004 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Jden_1998 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_2000 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_2002 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Jden_1884 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D Jden_1223 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:jde02035]
D Jden_2004 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Jden_2003 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Jden_1999 hypothetical protein K03409 cheX; chemotaxis protein CheX
D Jden_2001 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Jden_2002 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Jden_1998 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_2000 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Jden_0359 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0360 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0421 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_0673 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Jden_1961 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_1995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Jden_2472 methyl-accepting chemotaxis sensory transducer with GAF sensor K03406 mcp; methyl-accepting chemotaxis protein
D Jden_2025 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D Jden_2024 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Jden_2023 flagellar FliJ protein K02413 fliJ; flagellar protein FliJ
D Jden_2012 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Jden_2011 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Jden_2010 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Jden_2009 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Jden_2007 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Jden_2008 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB
D Jden_2026 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Jden_2014 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Jden_2013 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Jden_2027 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Jden_2015 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Jden_2028 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Jden_2021 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK
D Jden_2030 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Jden_2029 flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D Jden_2020 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Jden_2019 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Jden_2041 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Jden_2042 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Jden_2035 flagellin domain protein K02406 fliC; flagellin
D Jden_2036 flagellin domain protein K02406 fliC; flagellin
D Jden_2037 flagellin domain protein K02406 fliC; flagellin
D Jden_2038 flagellin domain protein K02406 fliC; flagellin
D Jden_2034 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Jden_2033 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Jden_1002 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Jden_2039 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D Jden_2017 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Jden_2016 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Jden_2043 protein of unknown function DUF180 K13626 fliW; flagellar assembly factor FliW
D Jden_2018 flagellar FlbD family protein K02385 flbD; flagellar protein FlbD
D Jden_1346 twitching motility protein K02669 pilT; twitching motility protein PilT
D Jden_1808 twitching motility protein K02669 pilT; twitching motility protein PilT
D Jden_1344 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA
D Jden_1347 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D Jden_1345 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D Jden_1340 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Jden_1338 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D Jden_1339 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Jden_0859 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D Jden_0856 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Jden_2224 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:jde04812]
D Jden_1077 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Jden_1267 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Jden_1299 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Jden_2552 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Jden_2551 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:jde04147]
D Jden_2463 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K04079 HSP90A; molecular chaperone HtpG
D Jden_1924 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Jden_1256 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Jden_1257 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Jden_1221 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Jden_0164 Peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Jden_2346 band 7 protein K07192 FLOT; flotillin
D Jden_2055 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Jden_0349 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Jden_0370 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Jden_0638 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Jden_0641 IMP dehydrogenase family protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Jden_0585 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Jden_1547 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Jden_1053 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Jden_0326 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D Jden_0962 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1327 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_1442 AMP-dependent synthetase and ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D Jden_2378 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Jden_1837 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Jden_0608 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Jden_1364 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Jden_1118 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Jden_1117 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Jden_2211 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Jden_1729 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Jden_0485 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Jden_1484 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_1487 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Jden_2494 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Jden_1058 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Jden_0678 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Jden_1475 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Jden_1724 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Jden_1262 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Jden_1585 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Jden_1258 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Jden_2086 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:jde02048]
D Jden_1501 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Jden_2251 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Jden_1500 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Jden_2249 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Jden_1499 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Jden_2248 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Jden_1631 restriction endonuclease K07448 mrr; restriction system protein
D Jden_0773 plasmid stabilization system K06218 relE; mRNA interferase RelE/StbE
D Jden_0779 addiction module antitoxin K06218 relE; mRNA interferase RelE/StbE
D Jden_1662 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D Jden_1663 prevent-host-death family protein K19159 yefM; antitoxin YefM
D Jden_0767 plasmid maintenance system killer K07334 higB-1; toxin HigB-1
D Jden_0750 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1
D Jden_0768 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1
D Jden_1077 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Jden_1688 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Jden_1454 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Jden_1722 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:jde04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:jde04090]
C 01504 Antimicrobial resistance genes [BR:jde01504]
D Jden_0889 ABC transporter related K18230 tylC; macrolide transport system ATP-binding/permease protein
D Jden_0713 aminoglycoside phosphotransferase K06979 mph; macrolide phosphotransferase
D Jden_0051 major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:jde00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:jde03100]
D Jden_R0002 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Jden_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Jden_R0050 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Jden_R0007 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0008 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0058 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Jden_R0048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Jden_R0049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Jden_R0073 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Jden_R0074 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Jden_R0042 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Jden_R0053 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Jden_R0060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Jden_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Jden_R0052 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Jden_R0072 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Jden_R0031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0043 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0080 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Jden_R0030 tRNA-His K14226 tRNA-His; tRNA His
D Jden_R0001 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Jden_R0004 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0059 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Jden_R0027 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Jden_R0028 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Jden_R0071 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Jden_R0016 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0023 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met
D Jden_R0075 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Jden_R0012 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Jden_R0013 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Jden_R0039 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Jden_R0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0009 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Jden_R0015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0063 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0064 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Jden_R0017 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Jden_R0018 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Jden_R0014 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Jden_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val
D Jden_R0044 tRNA-Val K14237 tRNA-Val; tRNA Val
D Jden_R0046 tRNA-Val K14237 tRNA-Val; tRNA Val
D Jden_R0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0032 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0057 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0079 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Jden_R0020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0033 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0056 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0069 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0078 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Jden_R0021 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0022 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0034 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0035 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0065 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0066 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0067 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0068 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0077 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Jden_R0045 rnpB; RNA component of RNaseP K01978 rnpB; RNase P catalytic RNA component
D Jden_R0025 ssrA; tmRNA as predicted by Rfam (RF00023), score 172.98 K15035 ssrA; transfer-messenger RNA
D Jden_R0011 ffs; SRP RNA; RNA component of signal recognitionparti cle K01983 ffs; signal recognition particle 4.5S RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Jden_0463 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D Jden_1057 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D Jden_0208 Luciferase-like monooxygenase K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
D Jden_1691 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D Jden_0836 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Jden_1896 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Jden_2240 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D Jden_0073 transferase, putative K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D Jden_0261 alpha/beta hydrolase fold protein K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D Jden_1171 Dyp-type peroxidase family K15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19]
D Jden_0897 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Jden_0334 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Jden_1150 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Jden_0205 Antibiotic biosynthesis monooxygenase K21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57]
D Jden_0557 Ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Jden_0714 glutaredoxin-like protein K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D Jden_0366 Protein-tyrosine phosphatase, low molecular weight K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Jden_1397 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Jden_2206 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Jden_2234 mycothiol biosynthesis acetyltransferase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D Jden_1294 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Jden_2087 UDP-N-acetylglucosamine K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D Jden_1218 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Jden_1675 Dak phosphatase K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D Jden_1486 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D Jden_0492 protein of unknown function DUF147 K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D Jden_2256 Protein-tyrosine phosphatase, low molecular weight K18701 arsC; arsenate-mycothiol transferase [EC:2.8.4.2]
D Jden_1582 putative esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D Jden_0934 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Jden_1621 Phosphoglycerate mutase K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D Jden_1640 Phosphoglycerate mutase K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D Jden_0704 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Jden_1166 putative phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Jden_1956 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Jden_1771 protein of unknown function DUF91 K07503 nucS; endonuclease [EC:3.1.-.-]
D Jden_0396 glycoside hydrolase family 81 K01180 E3.2.1.6; endo-1,3(4)-beta-glucanase [EC:3.2.1.6]
D Jden_0385 LPXTG-motif cell wall anchor domain protein K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D Jden_2125 Arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D Jden_0510 glycoside hydrolase family 43 K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D Jden_0516 Arabinan endo-1,5-alpha-L-arabinosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D Jden_1622 glycoside hydrolase family 43 K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D Jden_1623 glycoside hydrolase family 43 K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D Jden_2394 Alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139]
D Jden_0731 cellulose-binding family II K18578 CEL74A; xyloglucan-specific exo-beta-1,4-glucanase [EC:3.2.1.155]
D Jden_1763 glycoside hydrolase family 31 K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D Jden_0620 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Jden_0854 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Jden_1520 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Jden_0794 LmbE family protein K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]
D Jden_1891 mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D Jden_1889 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Jden_0460 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Jden_1283 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Jden_1832 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Jden_2449 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Jden_0626 YjeF-family domain protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Jden_0215 hypothetical protein K18197 yesW; rhamnogalacturonan endolyase [EC:4.2.2.23]
D Jden_1899 peptidylprolyl isomerase FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D Jden_1762 N-acylglucosamine 2-epimerase K18479 yihS; sulfoquinovose isomerase [EC:5.3.1.31]
D Jden_1195 cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
D Jden_0919 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D Jden_0912 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D Jden_2339 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D Jden_0776 heavy metal translocating P-type ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D Jden_0507 histone deacetylase superfamily K04768 acuC; acetoin utilization protein AcuC
D Jden_2069 glycoside hydrolase family 3 domain protein K17641 bxlA; beta-xylosidase
C 99982 Energy metabolism
D Jden_1145 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins
D Jden_1725 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
D Jden_0021 NrdI protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D Jden_0202 protein of unknown function DUF540 K06203 cysZ; CysZ protein
D Jden_1699 alanine racemase domain protein K06997 yggS; PLP dependent protein
D Jden_2385 acetyltransferase, GNAT family K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D Jden_1953 Transglycosylase domain protein K21688 rpfB; resuscitation-promoting factor RpfB
D Jden_1954 protein of unknown function DUF348 K21688 rpfB; resuscitation-promoting factor RpfB
D Jden_1955 G5 domain protein K21688 rpfB; resuscitation-promoting factor RpfB
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
D Jden_0184 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D Jden_1578 phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Jden_0301 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D Jden_2047 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D Jden_2133 phage antirepressor protein K07741 antB; anti-repressor protein
C 99974 Translation
C 99975 Protein processing
D Jden_0883 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Jden_0954 trigger factor K03545 tig; trigger factor
D Jden_0867 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Jden_1753 glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D Jden_2145 glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH
D Jden_2285 glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH
D Jden_0994 magnesium chelatase ChlI subunit K07391 comM; magnesium chelatase family protein
D Jden_0523 ResB family protein K07399 resB; cytochrome c biogenesis protein
C 99976 Replication and repair
D Jden_0015 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC
D Jden_0993 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D Jden_1198 RecB family exonuclease-like protein K07465 K07465; putative RecB family exonuclease
D Jden_1000 DNA protecting protein DprA K04096 smf; DNA processing protein
D Jden_1356 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D Jden_0321 TniAdelta1 K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Jden_1605 Rhodanese domain protein K03972 pspE; phage shock protein E
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Jden_1647 major facilitator superfamily MFS_1 K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D Jden_0430 amino acid permease-associated region K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Jden_2217 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D Jden_0251 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D Jden_1694 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
C 99978 Cell growth
D Jden_2554 single-stranded nucleic acid binding R3H domain protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D Jden_0793 GTP-binding protein TypA K06207 typA; GTP-binding protein
D Jden_1546 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D Jden_0740 PhoH family protein K07175 phoH2; PhoH-like ATPase
D Jden_0561 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
C 99994 Others
D Jden_2085 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Jden_2218 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D Jden_0936 globin K06886 glbN; hemoglobin
D Jden_0335 MMPL domain protein K06994 K06994; putative drug exporter of the RND superfamily
D Jden_0482 MMPL domain protein K06994 K06994; putative drug exporter of the RND superfamily
D Jden_1687 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 K07025; putative hydrolase of the HAD superfamily
D Jden_1140 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Jden_1141 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D Jden_0817 ribonuclease BN K07058 K07058; membrane protein
D Jden_0616 Rhodanese domain protein K07146 K07146; UPF0176 protein
D Jden_0481 YhgE/Pip N-terminal domain protein K01421 yhgE; putative membrane protein
D Jden_0687 YhgE/Pip C-terminal domain protein K01421 yhgE; putative membrane protein
D Jden_2469 membrane protein of unknown function K08972 K08972; putative membrane protein
D Jden_0387 protein of unknown function DUF368 K08974 K08974; putative membrane protein
D Jden_2098 membrane-flanked domain protein K08981 K08981; putative membrane protein
D Jden_1581 conserved hypothetical protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D Jden_2050 conserved hypothetical protein K06860 K06860; putative heme uptake system protein
D Jden_0076 Radical SAM domain protein K06871 K06871; uncharacterized protein
D Jden_0275 protein of unknown function ATP binding K06945 K06945; uncharacterized protein
D Jden_0986 KH domain protein K06960 K06960; uncharacterized protein
D Jden_0257 GCN5-related N-acetyltransferase K06975 K06975; uncharacterized protein
D Jden_1014 GCN5-related N-acetyltransferase K06976 K06976; uncharacterized protein
D Jden_1156 protein of unknown function zinc metallopeptidase putative K07054 K07054; uncharacterized protein
D Jden_1477 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein
D Jden_0214 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K07077 K07077; uncharacterized protein
D Jden_0728 permease K07089 K07089; uncharacterized protein
D Jden_1590 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Jden_0431 metallophosphoesterase K07098 K07098; uncharacterized protein
D Jden_1738 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Jden_2426 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein
D Jden_0273 Roadblock/LC7 family protein K07131 K07131; uncharacterized protein
D Jden_1136 conserved hypothetical protein K07149 K07149; uncharacterized protein
D Jden_1497 protein of unknown function DUF164 K07164 K07164; uncharacterized protein
D Jden_2556 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Jden_1921 protein of unknown function DUF501 K09009 K09009; uncharacterized protein
D Jden_0725 protein of unknown function UPF0182 K09118 K09118; uncharacterized protein
D Jden_2099 membrane-flanked domain protein K09167 K09167; uncharacterized protein
D Jden_1634 AAA ATPase K09384 K09384; uncharacterized protein
D Jden_1507 protein of unknown function DUF1349 K09702 K09702; uncharacterized protein
D Jden_1250 YCII-related K09780 K09780; uncharacterized protein
D Jden_1616 protein of unknown function DUF808 K09781 K09781; uncharacterized protein
D Jden_1855 protein of unknown function DUF343 K09791 K09791; uncharacterized protein
D Jden_0664 hypothetical protein K09793 K09793; uncharacterized protein
D Jden_1496 protein of unknown function DUF328 K09861 K09861; uncharacterized protein
D Jden_0363 protein of unknown function DUF1680 K09955 K09955; uncharacterized protein
D Jden_2238 protein of unknown function DUF47 K07220 K07220; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: August 10, 2025