{ "name":"lja03019", "children":[ { "name":"Eukaryotic type", "children":[ { "name":"mRNA processing factors", "children":[ { "name":"5' end processing", "children":[ { "name":"Capping factors", "children":[ { "name":"130718036 mRNA cap guanine-N7 methyltransferase 1-like\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"130749189 mRNA cap guanine-N7 methyltransferase 1-like\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"130729206 uncharacterized protein LOC130729206 isoform X1\tK13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]" }, { "name":"130749372 uncharacterized protein LOC130749372\tK13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]" }, { "name":"130730736 cyclin-dependent kinase D-3-like\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]" }, { "name":"130738810 cyclin-dependent kinase D-3-like\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]" } ] }, { "name":"Cap binding complex", "children":[ { "name":"130729769 nuclear cap-binding protein subunit 1\tK12882 NCBP1; nuclear cap-binding protein subunit 1" }, { "name":"130746827 nuclear cap-binding protein subunit 2\tK12883 NCBP2; nuclear cap-binding protein subunit 2" } ] } ] }, { "name":"3' end processing", "children":[ { "name":"Pre-mRNA cleavage factor Im (CFIm)", "children":[ { "name":"130720882 pre-mRNA cleavage factor Im 25 kDa subunit 2\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"130724135 LOW QUALITY PROTEIN: pre-mRNA cleavage factor Im 25 kDa subunit 1-like\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"130722100 uncharacterized protein LOC130722100\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" }, { "name":"130722604 uncharacterized protein LOC130722604\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" } ] }, { "name":"Pre-mRNA cleavage factor IIm (CFIIm)", "children":[ { "name":"130716864 protein CLP1 homolog\tK14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]" }, { "name":"130730237 polyadenylation and cleavage factor homolog 4-like isoform X1\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" }, { "name":"130741414 polyadenylation and cleavage factor homolog 4 isoform X1\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" }, { "name":"130741415 polyadenylation and cleavage factor homolog 4-like\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" } ] }, { "name":"Cleavage and polyadenylation specificity factor (CPSF) complex", "children":[ { "name":"130738453 cleavage and polyadenylation specificity factor subunit 1\tK14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1" }, { "name":"130738250 cleavage and polyadenylation specificity factor subunit 2\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"130726996 cleavage and polyadenylation specificity factor subunit 3-I\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"130722062 30-kDa cleavage and polyadenylation specificity factor 30\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"130748121 uncharacterized protein LOC130748121\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"130745443 flowering time control protein FY\tK15542 PFS2; polyadenylation factor subunit 2" }, { "name":"130711786 protein ANTHESIS POMOTING FACTOR 1 isoform X1\tK14962 WDR82; COMPASS component SWD2" }, { "name":"130729568 protein ANTHESIS POMOTING FACTOR 1\tK14962 WDR82; COMPASS component SWD2" }, { "name":"130711955 serine\/threonine-protein phosphatase PP1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130717017 serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130717169 serine\/threonine-protein phosphatase PP1 isozyme 3-like isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130723544 serine\/threonine-protein phosphatase PP1-like isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130731156 serine\/threonine-protein phosphatase PP1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130731325 serine\/threonine-protein phosphatase PP1 isozyme 3-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130733680 serine\/threonine-protein phosphatase PP1 isozyme 4\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130748612 serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"130738732 uncharacterized protein LOC130738732\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" } ] }, { "name":"Cleavage stimulation factor (CSTF) complex", "children":[ { "name":"130734428 cleavage stimulation factor subunit 50\tK14406 CSTF1; cleavage stimulation factor subunit 1" }, { "name":"130717337 cleavage stimulating factor 64\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"130737856 cleavage stimulation factor subunit 77 isoform X1\tK14408 CSTF3; cleavage stimulation factor subunit 3" }, { "name":"130727676 uncharacterized protein LOC130727676 isoform X1\tK06100 SYMPK; symplekin" }, { "name":"130749200 uncharacterized protein LOC130749200 isoform X1\tK06100 SYMPK; symplekin" } ] }, { "name":"U7-dependent histone pre-mRNA processing factors", "children":[ { "name":"130733163 uncharacterized protein LOC130733163\tK11086 SNRPB; small nuclear ribonucleoprotein B and B'" }, { "name":"130715483 small nuclear ribonucleoprotein SmD3a-like\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"130747125 small nuclear ribonucleoprotein SmD3b-like\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"130711798 uncharacterized protein LOC130711798\tK11097 SNRPE; small nuclear ribonucleoprotein E" }, { "name":"130720960 uncharacterized protein LOC130720960\tK11097 SNRPE; small nuclear ribonucleoprotein E" }, { "name":"130715695 probable small nuclear ribonucleoprotein F\tK11098 SNRPF; small nuclear ribonucleoprotein F" }, { "name":"130716969 probable small nuclear ribonucleoprotein F\tK11098 SNRPF; small nuclear ribonucleoprotein F" }, { "name":"130721152 probable small nuclear ribonucleoprotein G\tK11099 SNRPG; small nuclear ribonucleoprotein G" }, { "name":"130730192 probable small nuclear ribonucleoprotein G\tK11099 SNRPG; small nuclear ribonucleoprotein G" }, { "name":"130738250 cleavage and polyadenylation specificity factor subunit 2\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"130726996 cleavage and polyadenylation specificity factor subunit 3-I\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"130717337 cleavage stimulating factor 64\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"130727676 uncharacterized protein LOC130727676 isoform X1\tK06100 SYMPK; symplekin" }, { "name":"130749200 uncharacterized protein LOC130749200 isoform X1\tK06100 SYMPK; symplekin" } ] }, { "name":"DRB sensitivity inducing factor (DSIF) complex", "children":[ { "name":"130726558 transcription elongation factor SPT4 homolog 1\tK15171 SUPT4H1; transcription elongation factor SPT4" }, { "name":"130740628 putative transcription elongation factor SPT5 homolog 1 isoform X1\tK15172 SUPT5H; transcription elongation factor SPT5" } ] }, { "name":"N6-methyltransferase complex", "children":[ { "name":"130746150 N6-adenosine-methyltransferase MT-A70-like\tK05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]" }, { "name":"130716843 N6-adenosine-methyltransferase non-catalytic subunit MTB\tK23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit" }, { "name":"130714487 uncharacterized protein LOC130714487\tK11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]" }, { "name":"130711498 FKBP12-interacting protein of 37 kDa-like isoform X1\tK22824 WTAP; pre-mRNA-splicing regulator WTAP" }, { "name":"130734484 FKBP12-interacting protein of 37 kDa-like\tK22824 WTAP; pre-mRNA-splicing regulator WTAP" }, { "name":"130743485 uncharacterized protein LOC130743485 isoform X1\tK22909 ZC3H13; zinc finger CCCH domain-containing protein 13" }, { "name":"130749019 E3 ubiquitin-protein ligase HAKAI homolog\tK15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]" } ] }, { "name":"Poly(A) addition factors", "children":[ { "name":"130713726 nuclear poly(A) polymerase 1-like\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"130721980 nuclear poly(A) polymerase 3\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"130727645 nuclear poly(A) polymerase 4 isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"130738831 nuclear poly(A) polymerase 1-like\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"130745971 nuclear poly(A) polymerase 4-like isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" } ] }, { "name":"Negative regulators of mRNA 3' end processing", "children":[ { "name":"130730508 BRCA1-associated RING domain protein 1\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"130739194 zinc finger CCCH domain-containing protein 41\tK13192 RBM26; RNA-binding protein 26" }, { "name":"130717895 RNA demethylase ALKBH10B\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"130718665 RNA demethylase ALKBH9B-like\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"130726261 RNA demethylase ALKBH9B-like\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"130730748 RNA demethylase ALKBH10B-like\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" } ] } ] }, { "name":"Other processing factors", "children":[ { "name":"130733181 KIN17-like protein\tK13102 KIN; DNA\/RNA-binding protein KIN17" }, { "name":"130745371 KIN17-like protein\tK13102 KIN; DNA\/RNA-binding protein KIN17" }, { "name":"130747668 KIN17-like protein\tK13102 KIN; DNA\/RNA-binding protein KIN17" }, { "name":"130743296 serrate RNA effector molecule-like isoform X1\tK27103 SRRT; serrate RNA effector molecule" }, { "name":"130745299 serrate RNA effector molecule-like isoform X1\tK27103 SRRT; serrate RNA effector molecule" } ] } ] }, { "name":"mRNA surveillance and transport factors", "children":[ { "name":"Transport factors", "children":[ { "name":"EJC complex", "children":[ { "name":"130741270 RNA-binding protein Y14\tK12876 RBM8A; RNA-binding protein 8A" }, { "name":"130747938 protein mago nashi homolog\tK12877 MAGOH; protein mago nashi" }, { "name":"130749498 protein mago nashi homolog\tK12877 MAGOH; protein mago nashi" }, { "name":"130726942 THO complex subunit 4D-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"130740515 THO complex subunit 4A-like isoform X1\tK12881 THOC4; THO complex subunit 4" }, { "name":"130743369 THO complex subunit 4A-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"130717955 DEAD-box ATP-dependent RNA helicase 15-like\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"130727386 DEAD-box ATP-dependent RNA helicase 15-like\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"130745817 DEAD-box ATP-dependent RNA helicase 15\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"130723354 eukaryotic initiation factor 4A-3\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"130746000 histone deacetylase complex subunit SAP18\tK14324 SAP18; histone deacetylase complex subunit SAP18" }, { "name":"130724250 uncharacterized protein LOC130724250\tK13114 PNN; pinin" }, { "name":"130710293 uncharacterized protein LOC130710293\tK12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus" }, { "name":"130748334 serine\/arginine-rich splicing factor SR45-like\tK14325 RNPS1; RNA-binding protein with serine-rich domain 1" } ] }, { "name":"TREX complex", "children":[ { "name":"130746877 THO complex subunit 1\tK12878 THOC1; THO complex subunit 1" }, { "name":"130712015 THO complex subunit 2 isoform X1\tK12879 THOC2; THO complex subunit 2" }, { "name":"130722719 THO complex subunit 3 isoform X1\tK12880 THOC3; THO complex subunit 3" }, { "name":"130726942 THO complex subunit 4D-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"130740515 THO complex subunit 4A-like isoform X1\tK12881 THOC4; THO complex subunit 4" }, { "name":"130743369 THO complex subunit 4A-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"130721946 THO complex subunit 5A\tK13174 THOC5; THO complex subunit 5" }, { "name":"130710171 THO complex subunit 6\tK13175 THOC6; THO complex subunit 6" }, { "name":"130725947 THO complex subunit 7A-like\tK13176 THOC7; THO complex subunit 7" } ] }, { "name":"TREX-2 complex", "children":[ { "name":"130714622 enhanced ethylene response protein 5\tK23801 PCID2; nuclear mRNA export protein PCID2\/THP1" }, { "name":"130726668 protein DSS1 HOMOLOG ON CHROMOSOME V-like\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"130734535 protein DSS1 HOMOLOG ON CHROMOSOME V-like\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"130729703 transcription and mRNA export factor ENY2\tK11368 ENY2; enhancer of yellow 2 transcription factor" }, { "name":"130724166 SAC3 family protein B isoform X1\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"130745355 SAC3 family protein C\tK23719 SAC3; nuclear mRNA export protein SAC3" } ] }, { "name":"Nuclear pore complex", "children":[ { "name":"130748732 nuclear-pore anchor-like isoform X1\tK09291 TPR; nucleoprotein TPR" }, { "name":"130726220 protein RAE1-like\tK14298 RAE1; mRNA export factor" }, { "name":"130739636 protein RAE1-like\tK14298 RAE1; mRNA export factor" }, { "name":"130745758 protein RAE1\tK14298 RAE1; mRNA export factor" }, { "name":"130724041 protein transport protein SEC13 homolog B-like\tK14004 SEC13; protein transport protein SEC13" }, { "name":"130733073 protein transport protein SEC13 homolog B\tK14004 SEC13; protein transport protein SEC13" }, { "name":"130734465 nuclear pore complex protein NUP85\tK14304 NUP85; nuclear pore complex protein Nup85" }, { "name":"130713809 nuclear pore complex protein NUP43\tK14305 NUP43; nuclear pore complex protein Nup43" }, { "name":"130729285 nuclear pore complex protein NUP54\tK14308 NUP54; nuclear pore complex protein Nup54" }, { "name":"130729479 nuclear pore complex protein NUP62\tK14306 NUP62; nuclear pore complex protein Nup62" }, { "name":"130722382 nuclear pore complex protein NUP88\tK14318 NUP88; nuclear pore complex protein Nup88" }, { "name":"130745237 nuclear pore complex protein NUP93A-like\tK14309 NUP93; nuclear pore complex protein Nup93" }, { "name":"130716957 nuclear pore complex protein NUP98A isoform X1\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"130732888 nuclear pore complex protein NUP96 isoform X1\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"130740302 nuclear pore complex protein NUP98A-like isoform X1\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"130746431 nuclear pore complex protein NUP107 isoform X1\tK14301 NUP107; nuclear pore complex protein Nup107" }, { "name":"130732921 nuclear pore complex protein NUP133\tK14300 NUP133; nuclear pore complex protein Nup133" }, { "name":"130747712 uncharacterized protein LOC130747712\tK14311 NUP188; nuclear pore complex protein Nup188" }, { "name":"130710536 nuclear pore complex protein NUP155\tK14312 NUP155; nuclear pore complex protein Nup155" }, { "name":"130727284 nuclear pore complex protein NUP160-like\tK14303 NUP160; nuclear pore complex protein Nup160" }, { "name":"130749013 nuclear pore complex protein NUP35\tK14313 NUP35; nuclear pore complex protein Nup53" }, { "name":"130746095 nuclear pore complex protein NUP205\tK14310 NUP205; nuclear pore complex protein Nup205" }, { "name":"130739187 nuclear pore complex protein GP210\tK14314 NUP210; nuclear pore complex protein Nup210" }, { "name":"130720969 nuclear pore complex protein NUP214 isoform X1\tK14317 NUP214; nuclear pore complex protein Nup214" }, { "name":"130740795 nuclear pore complex protein NUP58\tK14307 NUPL1; nucleoporin p58\/p45" }, { "name":"130747815 zinc finger CCCH domain-containing protein 16 isoform X1\tK14321 NUPL2; nucleoporin-like protein 2" }, { "name":"130724322 uncharacterized protein LOC130724322\tK14315 NDC1; nucleoporin NDC1" }, { "name":"130741239 protein SEH1\tK14299 SEH1; nucleoporin SEH1" }, { "name":"130730015 aladin\tK14320 AAAS; aladin" }, { "name":"130714775 mRNA export factor GLE1-like isoform X1\tK18723 GLE1; nucleoporin GLE1" }, { "name":"130725082 mRNA export factor GLE1-like\tK18723 GLE1; nucleoporin GLE1" } ] }, { "name":"Ran-mediated transport factors", "children":[ { "name":"130711704 GTP-binding nuclear protein Ran1B-like isoform X1\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"130727403 GTP-binding nuclear protein Ran1A\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"130727404 GTP-binding nuclear protein Ran1B\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"130744461 GTP-binding nuclear protein Ran1B-like\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"130715482 plant UBX domain-containing protein 10-like\tK18726 FAF2; FAS-associated factor 2" }, { "name":"130721126 plant UBX domain-containing protein 10\tK18726 FAF2; FAS-associated factor 2" }, { "name":"130746036 plant UBX domain-containing protein 8-like isoform X1\tK18726 FAF2; FAS-associated factor 2" }, { "name":"130717047 cell division control protein 48 homolog E-like\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"130730332 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"130734485 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"130747244 cell division cycle protein 48 homolog isoform X1\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"130746836 uncharacterized protein LOC130746836\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"130747234 uncharacterized protein LOC130747234\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"130741323 protein EXPORTIN 1A-like\tK14290 XPO1; exportin-1" }, { "name":"130747785 protein EXPORTIN 1A\tK14290 XPO1; exportin-1" }, { "name":"130729067 uncharacterized protein LOC130729067 isoform X1\tK18460 XPO7; exportin-7" }, { "name":"130716847 RAN GTPase-activating protein 1\tK14319 RANGAP1; Ran GTPase-activating protein 1" }, { "name":"130718326 RAN GTPase-activating protein 2-like\tK14319 RANGAP1; Ran GTPase-activating protein 1" }, { "name":"130714528 nuclear transport factor 2B-like\tK28773 NUTF2; nuclear transport factor 2" }, { "name":"130723498 nuclear transport factor 2B-like\tK28773 NUTF2; nuclear transport factor 2" } ] }, { "name":"eIF4F and regulatory proteins", "children":[ { "name":"130722854 eukaryotic translation initiation factor\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"130726802 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"130737983 eukaryotic translation initiation factor NCBP\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"130723696 eukaryotic initiation factor 4A-11\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130740822 ATP-dependent RNA helicase eIF4A\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130746522 eukaryotic initiation factor 4A-10-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130748070 eukaryotic initiation factor 4A-10-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130710362 eukaryotic translation initiation factor\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"130722364 eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"130722752 eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"130710370 eukaryotic translation initiation factor 4B2 isoform X1\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"130747628 eukaryotic translation initiation factor 4B3\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"130731342 protein PIR\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"130717200 DEAD-box ATP-dependent RNA helicase 37-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"130722643 DEAD-box ATP-dependent RNA helicase 52C-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"130729727 uncharacterized protein LOC130729727 isoform X1\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"130716987 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130720720 polyadenylate-binding protein 3-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130722348 polyadenylate-binding protein 2-like isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130730269 polyadenylate-binding protein 7\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130723947 DExH-box ATP-dependent RNA helicase DExH11\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"130745093 uncharacterized protein LOC130745093\tK07575 MCTS; malignant T-cell-amplified sequence" }, { "name":"130724351 translation machinery-associated protein 22\tK24272 DENR; density-regulated protein" } ] }, { "name":"APOBEC1-ACF complex" }, { "name":"Other transport factors", "children":[ { "name":"130724691 partner of Y14 and mago isoform X1\tK14294 WIBG; partner of Y14 and mago" }, { "name":"130709523 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130714695 UBP1-associated protein 2C-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130723264 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130730696 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130733361 UBP1-associated protein 2B-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130739186 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130711776 uncharacterized protein LOC130711776 isoform X1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130717630 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130722571 heterogeneous nuclear ribonucleoprotein 1-like isoform X1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130723698 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130723767 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130732900 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130733037 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130733038 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130740831 uncharacterized protein LOC130740831\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"130711054 uncharacterized protein LOC130711054 isoform X1\tK14416 HBS1; elongation factor 1 alpha-like protein" }, { "name":"130720282 protein PELOTA 1\tK06965 PELO; protein pelota" }, { "name":"130732613 protein PELOTA 1-like\tK06965 PELO; protein pelota" }, { "name":"130713553 polyadenylate-binding protein 2-like isoform X1\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"130714281 polyadenylate-binding protein 2-like\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"130721282 polyadenylate-binding protein 1-like isoform X1\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"130717908 DEAD-box ATP-dependent RNA helicase 38\tK18655 DDX19; ATP-dependent RNA helicase DDX19\/DBP5 [EC:5.6.2.7]" }, { "name":"130722542 uncharacterized protein LOC130722542\tK12867 SYF1; pre-mRNA-splicing factor SYF1" }, { "name":"130730403 protein MODIFIER OF SNC1 11 isoform X1\tK18732 SARNP; SAP domain-containing ribonucleoprotein" }, { "name":"130711639 transcription factor Pur-alpha 1 isoform X1\tK21772 PURA; transcriptional activator protein Pur-alpha" }, { "name":"130716976 SAC3 family protein A\tK23802 LENG8; SAC3 family protein LENG8\/THP3" } ] } ] }, { "name":"Surveillance factors", "children":[ { "name":"Surveillance complex", "children":[ { "name":"130729828 eukaryotic peptide chain release factor subunit 1-3\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"130738637 eukaryotic peptide chain release factor subunit 1-3-like\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"130738975 eukaryotic peptide chain release factor subunit 1-3-like\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"130711182 uncharacterized protein LOC130711182 isoform X1\tK03267 ERF3; peptide chain release factor subunit 3" }, { "name":"130722014 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"130722523 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"130745601 regulator of nonsense transcripts UPF3\tK14328 UPF3; regulator of nonsense transcripts 3" } ] }, { "name":"Protein phosphatase 2A", "children":[ { "name":"130710984 serine\/threonine-protein phosphatase PP2A catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"130711866 serine\/threonine-protein phosphatase PP2A catalytic subunit-like\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"130730871 serine\/threonine-protein phosphatase PP2A catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"130739929 serine\/threonine-protein phosphatase PP2A catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"130718118 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"130738912 protein phosphatase PP2A regulatory subunit A\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"130739566 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"130746592 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"130748330 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"130713672 probable serine\/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"130714255 probable serine\/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"130717436 serine\/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X1\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"130717597 serine\/threonine protein phosphatase 2A regulatory subunit B''beta-like\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"130731324 serine\/threonine protein phosphatase 2A regulatory subunit B''beta-like\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"130710655 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130711104 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130717257 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130717435 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130721255 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130721321 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130722741 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130724548 serine\/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like isoform X1\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130727428 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130730301 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like isoform X1\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130737805 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"130737840 serine\/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform-like isoform X1\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" } ] }, { "name":"Other surveillance factors", "children":[ { "name":"130747414 uncharacterized protein LOC130747414\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"130723984 nonsense-mediated mRNA decay factor SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"130733311 nonsense-mediated mRNA decay factor SMG7\tK14409 SMG7; protein SMG7" }, { "name":"130747293 uncharacterized protein LOC130747293 isoform X1\tK18734 SMG8; protein SMG8" }, { "name":"130722104 uncharacterized protein LOC130722104\tK18735 SMG9; protein SMG9" }, { "name":"130741330 uncharacterized protein LOC130741330\tK18735 SMG9; protein SMG9" }, { "name":"130729727 uncharacterized protein LOC130729727 isoform X1\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" } ] } ] }, { "name":"Factors involved in mRNA localization", "children":[ { "name":"Cargo complex", "children":[ { "name":"130712058 pumilio homolog 24\tK14844 PUF6; pumilio homology domain family member 6" }, { "name":"130718349 uncharacterized protein LOC130718349\tK18740 EXD1; exonuclease 3'-5' domain-containing protein 1" } ] }, { "name":"Factors that have mRNA localization signals" }, { "name":"Trans-acting binding proteins", "children":[ { "name":"130720716 uncharacterized protein LOC130720716\tK13210 FUBP; far upstream element-binding protein" }, { "name":"130724532 uncharacterized protein LOC130724532\tK13210 FUBP; far upstream element-binding protein" }, { "name":"130741297 uncharacterized protein LOC130741297 isoform X1\tK13210 FUBP; far upstream element-binding protein" }, { "name":"130717683 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"130718907 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"130729607 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"130737758 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"130737921 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"130740139 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"130714036 elongation factor 1-gamma-like\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"130718812 elongation factor 1-gamma-like\tK03233 EEF1G; elongation factor 1-gamma" } ] }, { "name":"Other mRNA localization factors", "children":[ { "name":"130731342 protein PIR\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"130710559 KH domain-containing protein At4g18375-like isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130712160 KH domain-containing protein HEN4\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130714263 RNA-binding KH domain-containing protein PEPPER-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130718536 flowering locus K homology domain-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130722676 KH domain-containing protein HEN4-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130723032 KH domain-containing protein At4g18375-like isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130727658 KH domain-containing protein HEN4-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130728385 uncharacterized protein LOC130728385\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130728536 KH domain-containing protein At4g18375-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130730555 flowering locus K homology domain-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130731298 flowering locus K homology domain isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130739384 KH domain-containing protein HEN4-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130740095 RNA-binding KH domain-containing protein RCF3 isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"130744231 RNA-binding KH domain-containing protein RCF3\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" } ] } ] }, { "name":"mRNA cycle factors", "children":[ { "name":"Common to processing body (P body) and stress granule", "children":[ { "name":"130714538 protein argonaute 2-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130716689 protein argonaute 4-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130718315 protein argonaute 10-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130722660 protein argonaute 4-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130723040 protein argonaute 10-like isoform X1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130724014 protein argonaute 16 isoform X1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130724216 protein argonaute 4A-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130725785 protein argonaute 2-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130731925 protein argonaute 1-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130733359 protein argonaute 4-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130738646 protein argonaute 1-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130739792 protein argonaute 7 isoform X1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"130722854 eukaryotic translation initiation factor\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"130726802 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"130737983 eukaryotic translation initiation factor NCBP\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"130717200 DEAD-box ATP-dependent RNA helicase 37-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"130722643 DEAD-box ATP-dependent RNA helicase 52C-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"130728237 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"130746088 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"130717803 protein decapping 5-like\tK18749 LSM14; protein LSM14" }, { "name":"130739605 protein decapping 5\tK18749 LSM14; protein LSM14" }, { "name":"130741364 probable RNA helicase SDE3\tK18422 MOV10; helicase MOV-10 [EC:5.6.2.5]" }, { "name":"130716844 transportin-1\tK18752 TNPO1; transportin-1" }, { "name":"130747414 uncharacterized protein LOC130747414\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"130723984 nonsense-mediated mRNA decay factor SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"130733311 nonsense-mediated mRNA decay factor SMG7\tK14409 SMG7; protein SMG7" }, { "name":"130720236 zinc finger CCCH domain-containing protein 15\tK18753 ZFP36L; butyrate response factor" }, { "name":"130709523 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130714695 UBP1-associated protein 2C-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130723264 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130730696 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130733361 UBP1-associated protein 2B-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130739186 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"130716706 la-related protein 1C-like isoform X1\tK18757 LARP1; la-related protein 1" }, { "name":"130727843 la-related protein 1C-like\tK18757 LARP1; la-related protein 1" }, { "name":"130733360 la-related protein 1A isoform X1\tK18757 LARP1; la-related protein 1" }, { "name":"130740601 la-related protein 1C\tK18757 LARP1; la-related protein 1" } ] }, { "name":"P-body specific factors", "children":[ { "name":"130738070 mRNA-decapping enzyme subunit 2\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"130730777 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"130748245 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"130722580 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"130746438 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"130730744 sm-like protein LSM2\tK12621 LSM2; U6 snRNA-associated Sm-like protein LSm2" }, { "name":"130719913 sm-like protein LSM3A\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"130738184 sm-like protein LSM3B isoform X1\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"130721447 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"130731115 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"130710260 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"130742828 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"130711036 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"130748309 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"130720723 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"130720952 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"130709907 tubulin alpha-5 chain\tK07374 TUBA; tubulin alpha" }, { "name":"130716912 tubulin alpha chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"130727667 tubulin alpha chain\tK07374 TUBA; tubulin alpha" }, { "name":"130729886 tubulin alpha-5 chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"130737970 tubulin alpha-5 chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"130747140 uncharacterized protein LOC130747140 isoform X1\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"130740479 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"130743334 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"130729852 uncharacterized protein LOC130729852 isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"130740465 uncharacterized protein LOC130740465 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"130743273 uncharacterized protein LOC130743273 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"130717763 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"130730874 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"130740273 carbon catabolite repressor protein 4 homolog 4 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"130718656 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130718657 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130718999 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130726602 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130730790 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130742990 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130744974 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130744980 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130745748 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130747109 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130748691 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130734309 DIS3-like exonuclease 2\tK18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]" }, { "name":"130743099 protein PAT1 homolog isoform X1\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"130749476 protein PAT1 homolog\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"130721923 enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"130723730 enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"130722014 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"130722523 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"130745601 regulator of nonsense transcripts UPF3\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"130737485 DNA-directed RNA polymerase II subunit RPB7 isoform X1\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7" }, { "name":"130740965 DNA-directed RNA polymerase II subunit RPB7-like\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7" }, { "name":"130711158 YTH domain-containing protein ECT4\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"130715088 YTH domain-containing protein ECT4-like isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"130722296 YTH domain-containing protein ECT4-like isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"130723106 YTH domain-containing protein ECT4 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"130729873 YTH domain-containing protein ECT4-like isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"130743317 YTH domain-containing protein ECT4-like isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"130745629 YTH domain-containing protein ECT4 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" } ] }, { "name":"Stress granule specific factors", "children":[ { "name":"130712126 oligouridylate-binding protein 1-like isoform X1\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"130727501 RNA-binding protein 208-like\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"130746433 oligouridylate-binding protein 1B-like isoform X1\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"130716987 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130720720 polyadenylate-binding protein 3-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130722348 polyadenylate-binding protein 2-like isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130730269 polyadenylate-binding protein 7\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"130711294 nuclear transport factor 2\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"130713771 nuclear transport factor 2-like\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"130728350 eukaryotic translation initiation factor 2A\tK15026 EIF2A; translation initiation factor 2A" }, { "name":"130725448 eukaryotic translation initiation factor 3 subunit B-like\tK03253 EIF3B; translation initiation factor 3 subunit B" }, { "name":"130723696 eukaryotic initiation factor 4A-11\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130740822 ATP-dependent RNA helicase eIF4A\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130746522 eukaryotic initiation factor 4A-10-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130748070 eukaryotic initiation factor 4A-10-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"130723354 eukaryotic initiation factor 4A-3\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"130710370 eukaryotic translation initiation factor 4B2 isoform X1\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"130747628 eukaryotic translation initiation factor 4B3\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"130710362 eukaryotic translation initiation factor\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"130722364 eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"130722752 eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"130715670 guanine nucleotide-binding protein subunit beta-like protein\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" } ] } ] } ] }, { "name":"mRNA degradation factors", "children":[ { "name":"5'-3' decay", "children":[ { "name":"Decapping complex", "children":[ { "name":"130730777 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"130748245 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"130738070 mRNA-decapping enzyme subunit 2\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"130728237 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"130746088 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"130721923 enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"130723730 enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"130743099 protein PAT1 homolog isoform X1\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"130749476 protein PAT1 homolog\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" } ] }, { "name":"Lsm complex", "children":[ { "name":"130722580 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"130746438 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"130730744 sm-like protein LSM2\tK12621 LSM2; U6 snRNA-associated Sm-like protein LSm2" }, { "name":"130719913 sm-like protein LSM3A\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"130738184 sm-like protein LSM3B isoform X1\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"130721447 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"130731115 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"130710260 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"130742828 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"130711036 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"130748309 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"130720723 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"130720952 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" } ] }, { "name":"5' exonucleases", "children":[ { "name":"130721137 5'-3' exoribonuclease 3 isoform X1\tK12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]" }, { "name":"130718768 5'-3' exoribonuclease 4-like isoform X1\tK20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]" }, { "name":"130731242 5'-3' exoribonuclease 4-like isoform X1\tK20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]" } ] }, { "name":"Other 5'-3' decay factors" } ] }, { "name":"3'-5' decay", "children":[ { "name":"Core exosome factors", "children":[ { "name":"130719729 uncharacterized protein LOC130719729\tK07573 CSL4; exosome complex component CSL4" }, { "name":"130730749 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"130739777 uncharacterized protein LOC130739777\tK03681 RRP40; exosome complex component RRP40" }, { "name":"130731367 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"130728243 exosome complex exonuclease RRP46 homolog\tK12590 RRP46; exosome complex component RRP46" }, { "name":"130738545 exosome complex exonuclease RRP46 homolog\tK12590 RRP46; exosome complex component RRP46" }, { "name":"130740390 exosome complex component RRP41-like\tK12587 MTR3; exosome complex component MTR3" }, { "name":"130743005 exosome complex component RRP41-like\tK12587 MTR3; exosome complex component MTR3" }, { "name":"130747265 exosome complex component RRP41-like\tK12587 MTR3; exosome complex component MTR3" }, { "name":"130747269 exosome complex component RRP41-like\tK12587 MTR3; exosome complex component MTR3" }, { "name":"130717559 uncharacterized protein LOC130717559\tK12589 RRP42; exosome complex component RRP42" }, { "name":"130737672 uncharacterized protein LOC130737672\tK12589 RRP42; exosome complex component RRP42" }, { "name":"130714747 uncharacterized protein LOC130714747\tK12586 RRP43; exosome complex component RRP43" }, { "name":"130725967 uncharacterized protein LOC130725967\tK12586 RRP43; exosome complex component RRP43" }, { "name":"130730847 exosome complex component RRP45A-like isoform X1\tK03678 RRP45; exosome complex component RRP45" } ] }, { "name":"Exosome cofactors", "children":[ { "name":"130716259 exosome complex exonuclease RRP44 homolog A isoform X1\tK12585 DIS3; exosome complex exonuclease DIS3\/RRP44 [EC:3.1.13.-]" }, { "name":"130729916 protein RRP6-like 2\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"130737979 protein RRP6-like 2\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"130718822 uncharacterized protein LOC130718822\tK12592 C1D; exosome complex protein LRP1" }, { "name":"130726074 uncharacterized protein LOC130726074\tK12592 C1D; exosome complex protein LRP1" } ] }, { "name":"TRAMP complex", "children":[ { "name":"130743274 uncharacterized protein LOC130743274\tK03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5\/7 [EC:2.7.7.19]" }, { "name":"130711183 DExH-box ATP-dependent RNA helicase DExH10\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" }, { "name":"130729020 DExH-box ATP-dependent RNA helicase DExH9\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" } ] }, { "name":"Ski complex", "children":[ { "name":"130723947 DExH-box ATP-dependent RNA helicase DExH11\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"130741466 tetratricopeptide repeat protein SKI3 isoform X1\tK12600 SKI3; superkiller protein 3" }, { "name":"130710169 WD repeat-containing protein VIP3\tK12602 WDR61; WD repeat-containing protein 61" } ] }, { "name":"Ccr4-NOT complex", "children":[ { "name":"130717763 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"130730874 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"130740273 carbon catabolite repressor protein 4 homolog 4 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"130747140 uncharacterized protein LOC130747140 isoform X1\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"130740479 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"130743334 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"130729852 uncharacterized protein LOC130729852 isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"130740465 uncharacterized protein LOC130740465 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"130743273 uncharacterized protein LOC130743273 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"130718656 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130718657 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130718999 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130726602 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130730790 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130742990 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130744974 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130744980 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130745748 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130747109 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130748691 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"130722736 uncharacterized protein LOC130722736\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"130731518 uncharacterized protein LOC130731518 isoform X1\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"130733087 uncharacterized protein LOC130733087 isoform X1\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"130710537 uncharacterized protein LOC130710537 isoform X1\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"130717612 ABC transporter I family member 21-like\tK12608 CAF16; CCR4-NOT complex subunit CAF16" }, { "name":"130718188 ABC transporter I family member 20\tK12608 CAF16; CCR4-NOT complex subunit CAF16" } ] }, { "name":"Pan complex" }, { "name":"Other 3'-5' decay factors", "children":[ { "name":"130723636 poly(A)-specific ribonuclease PARN\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"130729433 poly(A)-specific ribonuclease PARN-like isoform X1\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"130710396 DExH-box ATP-dependent RNA helicase DExH3\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"130717105 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"130720120 DExH-box ATP-dependent RNA helicase DExH1 isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"130733269 DExH-box ATP-dependent RNA helicase DExH6-like\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"130739509 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"130745220 DExH-box ATP-dependent RNA helicase DExH3\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"130745397 uncharacterized protein LOC130745397\tK18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]" }, { "name":"130738675 uncharacterized protein LOC130738675 isoform X1\tK26109 NRDE2; nuclear exosome regulator NRDE2" }, { "name":"130739196 protein RST1 isoform X1\tK27498 FOCAD; focadhesin" } ] } ] }, { "name":"Other degradation factors", "children":[ { "name":"RNases" } ] } ] } ] }, { "name":"Prokaryotic type", "children":[ { "name":"Bacterial mRNA degradation factors", "children":[ { "name":"RNA degradosome components", "children":[ { "name":"Ribonucreases", "children":[ { "name":"130733358 oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" } ] }, { "name":"Helicases", "children":[ { "name":"130726198 uncharacterized protein LOC130726198\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" } ] }, { "name":"Other RNA degradosome components", "children":[ { "name":"130721883 bifunctional enolase 2\/transcriptional activator-like\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"130729757 bifunctional enolase 2\/transcriptional activator-like\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"130729758 enolase-like isoform X1\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"130730242 enolase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"130730865 enolase 1, chloroplastic\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"130732934 cytosolic enolase 3\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"130729933 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"130739202 polyribonucleotide nucleotidyltransferase 2, mitochondrial\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"130711559 ATP-dependent 6-phosphofructokinase 2\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"130711683 ATP-dependent 6-phosphofructokinase 5, chloroplastic-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"130716295 ATP-dependent 6-phosphofructokinase 3-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"130720476 ATP-dependent 6-phosphofructokinase 4, chloroplastic-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"130727646 ATP-dependent 6-phosphofructokinase 3-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"130735748 ATP-dependent 6-phosphofructokinase 5, chloroplastic-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"130739061 ATP-dependent 6-phosphofructokinase 3-like isoform X1\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"130748935 ATP-dependent 6-phosphofructokinase 6-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" } ] } ] }, { "name":"Other RNA degradation factors", "children":[ { "name":"Chaperones", "children":[ { "name":"130711867 heat shock 70 kDa protein, mitochondrial-like\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"130722417 heat shock 70 kDa protein, mitochondrial\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"130714652 chaperonin 60 subunit alpha 2, chloroplastic isoform X1\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"130718854 chaperonin CPN60-2, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"130720081 chaperonin CPN60-2, mitochondrial-like\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"130739662 ruBisCO large subunit-binding protein subunit beta, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"130743267 ruBisCO large subunit-binding protein subunit beta, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"130746567 chaperonin CPN60-like 2, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"130747252 ruBisCO large subunit-binding protein subunit alpha, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" } ] }, { "name":"Others" }, { "name":"Bacterial Small RNA Regulators" } ] } ] }, { "name":"Archeal mRNA degradation factors", "children":[ { "name":"Exosome components", "children":[ { "name":"Core exosome", "children":[ { "name":"130730749 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"130719729 uncharacterized protein LOC130719729\tK07573 CSL4; exosome complex component CSL4" } ] }, { "name":"Cofactors", "children":[ { "name":"130731367 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"130717559 uncharacterized protein LOC130717559\tK12589 RRP42; exosome complex component RRP42" }, { "name":"130737672 uncharacterized protein LOC130737672\tK12589 RRP42; exosome complex component RRP42" } ] }, { "name":"Others" } ] } ] } ] } ] }