{
	"name":"loki03400",
	"children":[
	{
		"name":"Eukaryotic type",
		"children":[
		{
			"name":"SSBR (single strand breaks repair)",
			"children":[
			{
				"name":"Direct repair",
				"children":[
				{
					"name":"Lokiarch_25270 ogt_2; Methylated-DNA--protein-cysteine methyltransferase, constitutive\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]"
				},
				{
					"name":"Lokiarch_32130 ogt_3; Methylated-DNA--protein-cysteine methyltransferase, constitutive\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]"
				}
				]
			},
			{
				"name":"BER (base exicision repair)",
				"children":[
				{
					"name":"DNA glycosylases",
					"children":[
					{
						"name":"Lokiarch_23680 putative 3-methyladenine DNA glycosylase\tK03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]"
					},
					{
						"name":"Lokiarch_36860 putative 3-methyladenine DNA glycosylase\tK03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]"
					},
					{
						"name":"Lokiarch_28910 mutY; A\/G-specific adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]"
					},
					{
						"name":"Lokiarch_25730 pdg; Ultraviolet N-glycosylase\/AP lyase\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]"
					}
					]
				},
				{
					"name":"AP endonucleases"
				},
				{
					"name":"Long Patch-BER factors",
					"children":[
					{
						"name":"DNA polymerase delta complex"
					},
					{
						"name":"DNA polymerase epsilon complex"
					},
					{
						"name":"Lokiarch_25940 pcn; DNA polymerase sliding clamp\tK04802 PCNA; proliferating cell nuclear antigen"
					},
					{
						"name":"Lokiarch_47590 fen; Flap endonuclease 1\tK04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]"
					}
					]
				},
				{
					"name":"Short Patch-BER factors"
				},
				{
					"name":"Other BER factors"
				}
				]
			},
			{
				"name":"NER (nucleotide excision repair)",
				"children":[
				{
					"name":"GGR (global genome repair) factors",
					"children":[
					{
						"name":"XPC-HR23B-CETN2 complex"
					},
					{
						"name":"Cul4-DDB2 complex"
					},
					{
						"name":"NER4 complex"
					}
					]
				},
				{
					"name":"TCR (transcription coupled repair) factors",
					"children":[
					{
						"name":"DNA-directed RNA polymerase II complex"
					},
					{
						"name":"Cul4-CSA complex"
					},
					{
						"name":"Other TCR factor"
					}
					]
				},
				{
					"name":"TFIIH complex",
					"children":[
					{
						"name":"Lokiarch_16670 ATP-dependent DNA helicase\tK10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]"
					}
					]
				},
				{
					"name":"RPA (replication factor A)",
					"children":[
					{
						"name":"Lokiarch_33990 rpa_2; putative replication protein A\tK07466 RFA1; replication factor A1"
					}
					]
				},
				{
					"name":"Other NER factors"
				}
				]
			},
			{
				"name":"MMR (mismatch excision repair)",
				"children":[
				{
					"name":"Mismatch and loop recognition factors"
				},
				{
					"name":"MutL homologs"
				},
				{
					"name":"DNA polymerase delta complex"
				},
				{
					"name":"RPA (replication factor A)",
					"children":[
					{
						"name":"Lokiarch_33990 rpa_2; putative replication protein A\tK07466 RFA1; replication factor A1"
					}
					]
				},
				{
					"name":"RFC (replication factor C)"
				},
				{
					"name":"Other MMR factors",
					"children":[
					{
						"name":"Lokiarch_25940 pcn; DNA polymerase sliding clamp\tK04802 PCNA; proliferating cell nuclear antigen"
					}
					]
				}
				]
			}
			]
		},
		{
			"name":"DSBR (double strand breaks repair)",
			"children":[
			{
				"name":"HR (homologous recombination)",
				"children":[
				{
					"name":"MRN(MRX) complex"
				},
				{
					"name":"BRCA1-core complex"
				},
				{
					"name":"BRCA1-A complex"
				},
				{
					"name":"BRCA1-B complex"
				},
				{
					"name":"BRCA1-C complex"
				},
				{
					"name":"BRCA complex"
				},
				{
					"name":"RecA family proteins"
				},
				{
					"name":"Rad52 family proteins"
				},
				{
					"name":"Rad54 family proteins"
				},
				{
					"name":"RecQ family DNA helicases"
				},
				{
					"name":"Bloom's syndrome complex (BTR)"
				},
				{
					"name":"RPA (replication factor A)",
					"children":[
					{
						"name":"Lokiarch_33990 rpa_2; putative replication protein A\tK07466 RFA1; replication factor A1"
					}
					]
				},
				{
					"name":"Protein phosphatase 4"
				},
				{
					"name":"AP-5 complex"
				},
				{
					"name":"SMC5-SMC6 complex"
				},
				{
					"name":"Other HR factors"
				}
				]
			},
			{
				"name":"NHEJ (non-homologous end-joining)",
				"children":[
				{
					"name":"DNA-PK complex"
				},
				{
					"name":"MRX complex"
				},
				{
					"name":"DNA Ligase 4 complex"
				},
				{
					"name":"X-family DNA polymerases"
				},
				{
					"name":"Other NHEJ factors"
				}
				]
			},
			{
				"name":"FA (Fanconi anemia) pathway",
				"children":[
				{
					"name":"FA core complex"
				},
				{
					"name":"FA core complex binding factors"
				},
				{
					"name":"Bloom's syndrome complex (BTR)"
				},
				{
					"name":"FANCD2-I complex"
				},
				{
					"name":"Downstream FA components"
				},
				{
					"name":"Other FA pathway factors"
				}
				]
			},
			{
				"name":"Other DSBR factors",
				"children":[
				{
					"name":"Protein phosphatase 6"
				},
				{
					"name":"Ubiquitin ligases"
				},
				{
					"name":"Others"
				}
				]
			}
			]
		},
		{
			"name":"TLS (translesion DNA synthesis) factors",
			"children":[
			{
				"name":"Y-family DNA polymerases"
			},
			{
				"name":"B-family DNA polymerases"
			},
			{
				"name":"A-family DNA polymerase"
			},
			{
				"name":"Rad6 epistasis group"
			},
			{
				"name":"Other TLS factors",
				"children":[
				{
					"name":"Lokiarch_25940 pcn; DNA polymerase sliding clamp\tK04802 PCNA; proliferating cell nuclear antigen"
				}
				]
			}
			]
		},
		{
			"name":"Check point factors",
			"children":[
			{
				"name":"Rad9-Hus1-Rad1 complex"
			},
			{
				"name":"HRAD17(Rad24)-RFC complex"
			},
			{
				"name":"Rad17-Mec3-Ddc1 complex"
			},
			{
				"name":"FPC (fork protection complex)"
			},
			{
				"name":"Triple T complex"
			},
			{
				"name":"BAG6-UBL4A-GET4 complex"
			},
			{
				"name":"SOSS complex"
			},
			{
				"name":"Other check point factors",
				"children":[
				{
					"name":"Lokiarch_37470 vat_4; Vps4-like ATPase\tK12196 VPS4; vacuolar protein-sorting-associated protein 4"
				}
				]
			}
			]
		},
		{
			"name":"Other factors with a suspected DNA repair function",
			"children":[
			{
				"name":"DNA polymerases"
			},
			{
				"name":"Nucleases"
			},
			{
				"name":"Helicases"
			},
			{
				"name":"PSO4 complex"
			},
			{
				"name":"Modulation of nucleotide pools",
				"children":[
				{
					"name":"Lokiarch_53830 nudF; ADP-ribose pyrophosphatase\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]"
				},
				{
					"name":"Lokiarch_40620 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]"
				}
				]
			}
			]
		}
		]
	},
	{
		"name":"Prokaryotic type",
		"children":[
		{
			"name":"SSBR (single strand breaks repair)",
			"children":[
			{
				"name":"Direct repair",
				"children":[
				{
					"name":"Lokiarch_25270 ogt_2; Methylated-DNA--protein-cysteine methyltransferase, constitutive\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]"
				},
				{
					"name":"Lokiarch_32130 ogt_3; Methylated-DNA--protein-cysteine methyltransferase, constitutive\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]"
				}
				]
			},
			{
				"name":"BER (base exicision repair)",
				"children":[
				{
					"name":"DNA glycosylases",
					"children":[
					{
						"name":"Lokiarch_23680 putative 3-methyladenine DNA glycosylase\tK03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]"
					},
					{
						"name":"Lokiarch_36860 putative 3-methyladenine DNA glycosylase\tK03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]"
					},
					{
						"name":"Lokiarch_28910 mutY; A\/G-specific adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]"
					},
					{
						"name":"Lokiarch_20240 tag_1; DNA-3-methyladenine glycosylase 1\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]"
					},
					{
						"name":"Lokiarch_49530 tag_2; DNA-3-methyladenine glycosylase 1\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]"
					},
					{
						"name":"Lokiarch_25730 pdg; Ultraviolet N-glycosylase\/AP lyase\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]"
					}
					]
				},
				{
					"name":"AP endonucleases",
					"children":[
					{
						"name":"Lokiarch_47130 nfo_2; Endonuclease 4\tK01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]"
					},
					{
						"name":"Lokiarch_39100 nfi_1; Endonuclease V\tK05982 nfi; deoxyribonuclease V [EC:3.1.21.7]"
					},
					{
						"name":"Lokiarch_45560 nfi_2; Endonuclease V\tK05982 nfi; deoxyribonuclease V [EC:3.1.21.7]"
					},
					{
						"name":"Lokiarch_28550 hypothetical protein\tK09120 dU; endonuclease dU"
					}
					]
				},
				{
					"name":"RecJ",
					"children":[
					{
						"name":"Lokiarch_17790 RecJ-like exonuclease\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
					},
					{
						"name":"Lokiarch_30120 RecJ-like exonuclease\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
					}
					]
				},
				{
					"name":"DNA ligase",
					"children":[
					{
						"name":"Lokiarch_01740 ligA; NAD-dependent DNA ligase\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					}
					]
				},
				{
					"name":"DNA polymerase I"
				}
				]
			},
			{
				"name":"NER (nucleotide excision repair)",
				"children":[
				{
					"name":"GGR (global genome repair) factors",
					"children":[
					{
						"name":"Lokiarch_10770 uvrA_1; UvrABC system protein A\tK03701 uvrA; excinuclease ABC subunit A"
					},
					{
						"name":"Lokiarch_28440 uvrA_3; UvrABC system protein A\tK03701 uvrA; excinuclease ABC subunit A"
					},
					{
						"name":"Lokiarch_28450 uvrB; UvrABC system protein B\tK03702 uvrB; excinuclease ABC subunit B"
					},
					{
						"name":"Lokiarch_30210 uvrC; UvrABC system protein C\tK03703 uvrC; excinuclease ABC subunit C"
					},
					{
						"name":"Lokiarch_01740 ligA; NAD-dependent DNA ligase\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					}
					]
				},
				{
					"name":"TCR (transcription coupled repair) factors",
					"children":[
					{
						"name":"DNA-directed RNA polymerase complex (RNAP)"
					},
					{
						"name":"TRCF (transcription-repair coupling factor)"
					}
					]
				}
				]
			},
			{
				"name":"MMR (mismatch excision repair)",
				"children":[
				{
					"name":"Mismatch and loop recognition factors",
					"children":[
					{
						"name":"Lokiarch_00850 mutS_1; DNA mismatch repair protein MutS\tK03555 mutS; DNA mismatch repair protein MutS"
					},
					{
						"name":"Lokiarch_18060 mutS_2; DNA mismatch repair protein MutS\tK03555 mutS; DNA mismatch repair protein MutS"
					}
					]
				},
				{
					"name":"Molecular matchmaker",
					"children":[
					{
						"name":"Lokiarch_07110 mutL_1; DNA mismatch repair protein MutL\tK03572 mutL; DNA mismatch repair protein MutL"
					},
					{
						"name":"Lokiarch_10950 mutL_2; DNA mismatch repair protein MutL\tK03572 mutL; DNA mismatch repair protein MutL"
					},
					{
						"name":"Lokiarch_46770 mutL_3; DNA mismatch repair protein MutL\tK03572 mutL; DNA mismatch repair protein MutL"
					}
					]
				},
				{
					"name":"Strand discrimination factor"
				},
				{
					"name":"DNA exonucleases"
				},
				{
					"name":"DNA polymerase III holoenzyme",
					"children":[
					{
						"name":"Lokiarch_52810 polC_4; DNA polymerase III PolC-type\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]"
					}
					]
				},
				{
					"name":"DNA ligase",
					"children":[
					{
						"name":"Lokiarch_01740 ligA; NAD-dependent DNA ligase\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					}
					]
				},
				{
					"name":"Other MMR factors",
					"children":[
					{
						"name":"Lokiarch_32000 D12 class N6 adenine-specific DNA methyltransferase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]"
					},
					{
						"name":"Lokiarch_40060 DNA adenine methylase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]"
					},
					{
						"name":"Lokiarch_45290 dpnM; Modification methylase DpnIIA\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]"
					}
					]
				}
				]
			}
			]
		},
		{
			"name":"DSBR (double strand breaks repair)",
			"children":[
			{
				"name":"HR (homologous recombination)",
				"children":[
				{
					"name":"RecBC pathway proteins",
					"children":[
					{
						"name":"Lokiarch_19860 DNA double-strand break repair Rad50 ATPase\tK03546 sbcC; DNA repair protein SbcC\/Rad50"
					},
					{
						"name":"Lokiarch_17630 exonuclease subunit SbcD\tK03547 sbcD; DNA repair protein SbcD\/Mre11"
					}
					]
				},
				{
					"name":"RecFOR pathway proteins",
					"children":[
					{
						"name":"Lokiarch_17790 RecJ-like exonuclease\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
					},
					{
						"name":"Lokiarch_30120 RecJ-like exonuclease\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
					}
					]
				},
				{
					"name":"AddAB pathway proteins"
				},
				{
					"name":"Other HR factor"
				},
				{
					"name":"Archaeal homologous recombinant proteins",
					"children":[
					{
						"name":"Lokiarch_08050 radA_2; DNA repair and recombination protein RadA\tK04483 radA; DNA repair protein RadA"
					},
					{
						"name":"Lokiarch_21880 radA_3; DNA repair and recombination protein RadA\tK04483 radA; DNA repair protein RadA"
					},
					{
						"name":"Lokiarch_24000 radA_4; DNA repair and recombination protein RadA\tK04483 radA; DNA repair protein RadA"
					},
					{
						"name":"Lokiarch_25080 radA_5; DNA repair and recombination protein RadA\tK04483 radA; DNA repair protein RadA"
					},
					{
						"name":"Lokiarch_38830 radA_6; DNA repair and recombination protein RadA\tK04483 radA; DNA repair protein RadA"
					},
					{
						"name":"Lokiarch_25120 radB; DNA repair and recombination protein RadB\tK04484 radB; DNA repair protein RadB"
					},
					{
						"name":"Lokiarch_19860 DNA double-strand break repair Rad50 ATPase\tK03546 sbcC; DNA repair protein SbcC\/Rad50"
					},
					{
						"name":"Lokiarch_17630 exonuclease subunit SbcD\tK03547 sbcD; DNA repair protein SbcD\/Mre11"
					}
					]
				}
				]
			},
			{
				"name":"NHEJ (non-homologous end-joining)",
				"children":[
				{
					"name":"Two-component NHEJ DNA repair complex"
				},
				{
					"name":"SHIIR (short-homology-independent illegitimate recombination)",
					"children":[
					{
						"name":"Facilitator",
						"children":[
						{
							"name":"Lokiarch_43500 gyrB_1; Topoisomerase IIA (DNA gyrase\/topoisomerase IV), B subunit\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]"
						},
						{
							"name":"Lokiarch_09080 topA_1; Topoisomerase IA (type III)\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]"
						}
						]
					},
					{
						"name":"Supressor"
					}
					]
				},
				{
					"name":"SHDIR (short-homology-dependent illegitimate recombination)",
					"children":[
					{
						"name":"RecET pathway",
						"children":[
						{
							"name":"Lokiarch_17790 RecJ-like exonuclease\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
						},
						{
							"name":"Lokiarch_30120 RecJ-like exonuclease\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
						},
						{
							"name":"Lokiarch_01740 ligA; NAD-dependent DNA ligase\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
						}
						]
					},
					{
						"name":"Facilitator"
					},
					{
						"name":"Supressor",
						"children":[
						{
							"name":"Lokiarch_10770 uvrA_1; UvrABC system protein A\tK03701 uvrA; excinuclease ABC subunit A"
						},
						{
							"name":"Lokiarch_28440 uvrA_3; UvrABC system protein A\tK03701 uvrA; excinuclease ABC subunit A"
						},
						{
							"name":"Lokiarch_28450 uvrB; UvrABC system protein B\tK03702 uvrB; excinuclease ABC subunit B"
						}
						]
					}
					]
				}
				]
			}
			]
		},
		{
			"name":"TLS (translesion DNA synthesis) factors",
			"children":[
			{
				"name":"Y-family DNA polymerases",
				"children":[
				{
					"name":"Lokiarch_47680 dinB_2; DNA polymerase IV\tK04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]"
				},
				{
					"name":"Lokiarch_49880 dinB_3; DNA polymerase IV\tK04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]"
				}
				]
			},
			{
				"name":"Other SOS response factors"
			}
			]
		},
		{
			"name":"Other factors with a suspected DNA repair function",
			"children":[
			{
				"name":"DNA polymerase"
			},
			{
				"name":"DNA helicases"
			},
			{
				"name":"Modulation of nucleotide pools",
				"children":[
				{
					"name":"Lokiarch_53830 nudF; ADP-ribose pyrophosphatase\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]"
				},
				{
					"name":"Lokiarch_40620 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]"
				}
				]
			},
			{
				"name":"Others",
				"children":[
				{
					"name":"Lokiarch_34980 hypothetical protein\tK22585 nreA; DNA repair protein NreA"
				}
				]
			}
			]
		}
		]
	}
	]
}