{ "name":"omo00001", "children":[ { "name":"09100 Metabolism", "children":[ { "name":"09101 Carbohydrate metabolism", "children":[ { "name":"00010 Glycolysis \/ Gluconeogenesis [PATH:omo00010]", "children":[ { "name":"RHO11_02975 glucokinase\tK00845 glk; glucokinase [EC:2.7.1.2]" }, { "name":"RHO11_09575 pgi; (GenBank) glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"RHO11_03990 fbp; (GenBank) class 1 fructose-bisphosphatase\tK03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]" }, { "name":"RHO11_08460 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"RHO11_00485 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"RHO11_00675 gapA; (GenBank) glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"RHO11_08455 pgk; (GenBank) phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"RHO11_03465 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"RHO11_10885 gpmM; (GenBank) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase\tK15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]" }, { "name":"RHO11_13885 apgM; (GenBank) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase\tK15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]" }, { "name":"RHO11_05105 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"RHO11_02200 pykF; (GenBank) pyruvate kinase PykF\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_04070 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_00520 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_03785 nifJ; (GenBank) pyruvate:ferredoxin (flavodoxin) oxidoreductase\tK03737 por; pyruvate-ferredoxin\/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.8.1]" }, { "name":"RHO11_00420 L-lactate dehydrogenase\tK00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]" }, { "name":"RHO11_11065 adhE; (GenBank) bifunctional acetaldehyde-CoA\/alcohol dehydrogenase\tK04072 adhE; acetaldehyde dehydrogenase \/ alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]" }, { "name":"RHO11_07005 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"RHO11_02775 galM; (GenBank) galactose-1-epimerase\tK01785 galM; aldose 1-epimerase [EC:5.1.3.3]" }, { "name":"RHO11_00020 histidine-type phosphatase\tK01085 agp; glucose-1-phosphatase [EC:3.1.3.10]" }, { "name":"RHO11_06345 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"RHO11_05970 D-hexose-6-phosphate mutarotase\tK01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]" }, { "name":"RHO11_04675 glycoside hydrolase family 1 protein\tK01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]" }, { "name":"RHO11_00540 PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09570 crr; (GenBank) PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09620 malX; (GenBank) maltose\/glucose-specific PTS transporter subunit IIBC\tK02791 malX; maltose\/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]" } ] }, { "name":"00020 Citrate cycle (TCA cycle) [PATH:omo00020]", "children":[ { "name":"RHO11_00570 citrate\/2-methylcitrate synthase\tK01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]" }, { "name":"RHO11_00560 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"RHO11_00565 icd; (GenBank) NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_12870 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"RHO11_12865 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"RHO11_05550 frdA; (GenBank) fumarate reductase (quinol) flavoprotein subunit\tK00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"RHO11_05545 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"RHO11_05540 hypothetical protein\tK00246 frdC; succinate dehydrogenase subunit C" }, { "name":"RHO11_05535 frdD; (GenBank) fumarate reductase subunit FrdD\tK00247 frdD; succinate dehydrogenase subunit D" }, { "name":"RHO11_00060 fumarate hydratase\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"RHO11_03820 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"RHO11_00520 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"RHO11_03785 nifJ; (GenBank) pyruvate:ferredoxin (flavodoxin) oxidoreductase\tK03737 por; pyruvate-ferredoxin\/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.8.1]" } ] }, { "name":"00030 Pentose phosphate pathway [PATH:omo00030]", "children":[ { "name":"RHO11_09575 pgi; (GenBank) glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"RHO11_06115 zwf; (GenBank) glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"RHO11_06120 pgl; (GenBank) 6-phosphogluconolactonase\tK01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]" }, { "name":"RHO11_03560 gndA; (GenBank) NADP-dependent phosphogluconate dehydrogenase\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"RHO11_08015 rpe; (GenBank) ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_09155 ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_10565 ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_00170 tkt; (GenBank) transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_11820 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_11825 transketolase family protein\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_00175 tal; (GenBank) transaldolase\tK00616 TALDO1; transaldolase [EC:2.2.1.2]" }, { "name":"RHO11_09060 rpiA; (GenBank) ribose-5-phosphate isomerase RpiA\tK01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]" }, { "name":"RHO11_00180 rpiB; (GenBank) ribose 5-phosphate isomerase B\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_03455 RpiB\/LacA\/LacB family sugar-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_10820 RpiB\/LacA\/LacB family sugar-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_03435 hxlB; (GenBank) 6-phospho-3-hexuloisomerase\tK08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]" }, { "name":"RHO11_09160 hxlB; (GenBank) 6-phospho-3-hexuloisomerase\tK08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]" }, { "name":"RHO11_10585 hxlB; (GenBank) 6-phospho-3-hexuloisomerase\tK08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]" }, { "name":"RHO11_05965 deoC; (GenBank) deoxyribose-phosphate aldolase\tK01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]" }, { "name":"RHO11_02295 rbsK; (GenBank) ribokinase\tK00852 rbsK; ribokinase [EC:2.7.1.15]" }, { "name":"RHO11_05955 deoB; (GenBank) phosphopentomutase\tK01839 deoB; phosphopentomutase [EC:5.4.2.7]" }, { "name":"RHO11_06345 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"RHO11_13785 ribose-phosphate pyrophosphokinase\tK00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]" }, { "name":"RHO11_08865 edd; (GenBank) phosphogluconate dehydratase\tK01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]" }, { "name":"RHO11_09990 edd; (GenBank) phosphogluconate dehydratase\tK01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]" }, { "name":"RHO11_10030 bifunctional 4-hydroxy-2-oxoglutarate aldolase\/2-dehydro-3-deoxy-phosphogluconate aldolase\tK01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase \/ (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]" }, { "name":"RHO11_11870 eda; (GenBank) bifunctional 4-hydroxy-2-oxoglutarate aldolase\/2-dehydro-3-deoxy-phosphogluconate aldolase\tK01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase \/ (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]" }, { "name":"RHO11_13155 NAD(P)-dependent oxidoreductase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_13160 D-glycerate dehydrogenase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_08870 gluconokinase, GntK\/IdnK-type\tK00851 idnK; gluconokinase [EC:2.7.1.12]" }, { "name":"RHO11_05740 sugar kinase\tK00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]" }, { "name":"RHO11_13150 sugar kinase\tK00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]" }, { "name":"RHO11_10000 PTS sugar transporter subunit IIC\tK17466 dgaC; D-glucosaminate PTS system EIIC component" }, { "name":"RHO11_10005 PTS system mannose\/fructose\/sorbose family transporter subunit IID\tK17467 dgaD; D-glucosaminate PTS system EIID component" }, { "name":"RHO11_08460 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"RHO11_03990 fbp; (GenBank) class 1 fructose-bisphosphatase\tK03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]" }, { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" } ] }, { "name":"00040 Pentose and glucuronate interconversions [PATH:omo00040]", "children":[ { "name":"RHO11_10795 pectinesterase family protein\tK01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]" }, { "name":"RHO11_10805 hypothetical protein\tK01728 pel; pectate lyase [EC:4.2.2.2]" }, { "name":"RHO11_10815 hypothetical protein\tK22994 pelX; pectate disaccharide-lyase [EC:4.2.2.9]" }, { "name":"RHO11_10825 oligogalacturonate lyase family protein\tK01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]" }, { "name":"RHO11_10835 cupin domain-containing protein\tK26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]" }, { "name":"RHO11_09045 kduI; (GenBank) 5-dehydro-4-deoxy-D-glucuronate isomerase\tK01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]" }, { "name":"RHO11_02595 uxaC; (GenBank) glucuronate isomerase\tK01812 uxaC; glucuronate isomerase [EC:5.3.1.12]" }, { "name":"RHO11_13755 uxaC; (GenBank) glucuronate isomerase\tK01812 uxaC; glucuronate isomerase [EC:5.3.1.12]" }, { "name":"RHO11_02590 tagaturonate reductase\tK00041 uxaB; tagaturonate reductase [EC:1.1.1.58]" }, { "name":"RHO11_08310 tagaturonate reductase\tK00041 uxaB; tagaturonate reductase [EC:1.1.1.58]" }, { "name":"RHO11_02585 altronate dehydratase family protein\tK01685 uxaA; altronate hydrolase [EC:4.2.1.7]" }, { "name":"RHO11_03940 altronate dehydratase\tK01685 uxaA; altronate hydrolase [EC:4.2.1.7]" }, { "name":"RHO11_06910 altronate dehydratase family protein\tK01685 uxaA; altronate hydrolase [EC:4.2.1.7]" }, { "name":"RHO11_08300 altronate dehydratase family protein\tK01685 uxaA; altronate hydrolase [EC:4.2.1.7]" }, { "name":"RHO11_13770 uxuA; (GenBank) mannonate dehydratase\tK01686 uxuA; mannonate dehydratase [EC:4.2.1.8]" }, { "name":"RHO11_12160 enolase C-terminal domain-like protein\tK08323 rspA; mannonate dehydratase [EC:4.2.1.8]" }, { "name":"RHO11_13760 fructuronate reductase\tK00040 uxuB; fructuronate reductase [EC:1.1.1.57]" }, { "name":"RHO11_13000 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"RHO11_00665 3-keto-L-gulonate-6-phosphate decarboxylase UlaD\tK03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]" }, { "name":"RHO11_00670 L-ribulose-5-phosphate 3-epimerase\tK03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]" }, { "name":"RHO11_00660 L-ribulose-5-phosphate 4-epimerase\tK03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]" }, { "name":"RHO11_09760 class II aldolase\/adducin family protein\tK03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]" }, { "name":"RHO11_08015 rpe; (GenBank) ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_09155 ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_10565 ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_03390 xylB; (GenBank) xylulokinase\tK00854 xylB; xylulokinase [EC:2.7.1.17]" }, { "name":"RHO11_10325 rhaB; (GenBank) rhamnulokinase\tK00848 rhaB; rhamnulokinase [EC:2.7.1.5]" }, { "name":"RHO11_10315 rhaD; (GenBank) rhamnulose-1-phosphate aldolase\tK01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]" }, { "name":"RHO11_03385 mannitol dehydrogenase family protein\tK00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]" }, { "name":"RHO11_04085 dihydrodipicolinate synthase family protein\tK22397 yjhH; 2-dehydro-3-deoxy-D-pentonate aldolase [EC:4.1.2.28]" } ] }, { "name":"00051 Fructose and mannose metabolism [PATH:omo00051]", "children":[ { "name":"RHO11_02670 aminoimidazole riboside kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"RHO11_04640 ROK family protein\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"RHO11_05530 manA; (GenBank) mannose-6-phosphate isomerase, class I\tK01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]" }, { "name":"RHO11_07550 cpsG; (GenBank) phosphomannomutase CpsG\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"RHO11_07555 mannose-1-phosphate guanylyltransferase\/mannose-6-phosphate isomerase\tK00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" }, { "name":"RHO11_06925 L-rhamnose mutarotase\tK29028 E5.1.3.29; L-fucose mutarotase [EC:5.1.3.29]" }, { "name":"RHO11_06920 SDR family oxidoreductase\tK18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]" }, { "name":"RHO11_06915 amidohydrolase family protein\tK07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]" }, { "name":"RHO11_10320 L-rhamnose isomerase\tK01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]" }, { "name":"RHO11_10325 rhaB; (GenBank) rhamnulokinase\tK00848 rhaB; rhamnulokinase [EC:2.7.1.5]" }, { "name":"RHO11_10315 rhaD; (GenBank) rhamnulose-1-phosphate aldolase\tK01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]" }, { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"RHO11_03990 fbp; (GenBank) class 1 fructose-bisphosphatase\tK03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]" }, { "name":"RHO11_08420 mannitol-1-phosphate 5-dehydrogenase\tK00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]" }, { "name":"RHO11_10570 mannitol-1-phosphate 5-dehydrogenase\tK00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]" }, { "name":"RHO11_07015 srlD; (GenBank) sorbitol-6-phosphate dehydrogenase\tK00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]" }, { "name":"RHO11_00270 fruK; (GenBank) 1-phosphofructokinase\tK00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]" }, { "name":"RHO11_03385 mannitol dehydrogenase family protein\tK00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]" }, { "name":"RHO11_08460 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"RHO11_00485 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"RHO11_00180 rpiB; (GenBank) ribose 5-phosphate isomerase B\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_03455 RpiB\/LacA\/LacB family sugar-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_10820 RpiB\/LacA\/LacB family sugar-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_00275 fruA; (GenBank) PTS fructose transporter subunit IIBC\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"RHO11_11285 PTS fructose transporter subunit IIBC\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"RHO11_10015 PTS sugar transporter subunit IIA\tK02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]" }, { "name":"RHO11_05510 mannose\/fructose\/sorbose PTS transporter subunit IIB\tK02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]" }, { "name":"RHO11_05515 PTS mannose\/fructose\/sorbose transporter subunit IIC\tK02795 manY; mannose PTS system EIIC component" }, { "name":"RHO11_05520 PTS system mannose\/fructose\/sorbose family transporter subunit IID\tK02796 manZ; mannose PTS system EIID component" }, { "name":"RHO11_08415 PTS mannitol transporter subunit IICBA\tK02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]" }, { "name":"RHO11_10580 PTS mannitol transporter subunit IICB\tK02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]" }, { "name":"RHO11_12740 hxpB; (GenBank) hexitol phosphatase HxpB\tK24204 hxpB; mannitol-1-\/sugar-\/sorbitol-6-\/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]" }, { "name":"RHO11_00195 PTS glucitol\/sorbitol transporter subunit IIA\tK02781 srlB; glucitol\/sorbitol PTS system EIIA component [EC:2.7.1.198]" }, { "name":"RHO11_07020 PTS glucitol\/sorbitol transporter subunit IIA\tK02781 srlB; glucitol\/sorbitol PTS system EIIA component [EC:2.7.1.198]" }, { "name":"RHO11_07025 PTS glucitol\/sorbitol transporter subunit IIB\tK02782 srlE; glucitol\/sorbitol PTS system EIIB component [EC:2.7.1.198]" }, { "name":"RHO11_07030 srlA; (GenBank) glucitol\/sorbitol-specific PTS transporter subunit IIC\tK02783 srlA; glucitol\/sorbitol PTS system EIIC component" } ] }, { "name":"00052 Galactose metabolism [PATH:omo00052]", "children":[ { "name":"RHO11_02775 galM; (GenBank) galactose-1-epimerase\tK01785 galM; aldose 1-epimerase [EC:5.1.3.3]" }, { "name":"RHO11_02770 galK; (GenBank) galactokinase\tK00849 galK; galactokinase [EC:2.7.1.6]" }, { "name":"RHO11_02765 galT; (GenBank) galactose-1-phosphate uridylyltransferase\tK00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]" }, { "name":"RHO11_02760 galE; (GenBank) UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"RHO11_12800 galE; (GenBank) UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"RHO11_13000 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"RHO11_06345 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"RHO11_02975 glucokinase\tK00845 glk; glucokinase [EC:2.7.1.2]" }, { "name":"RHO11_08895 beta-galactosidase\tK01190 lacZ; beta-galactosidase [EC:3.2.1.23]" }, { "name":"RHO11_08195 alpha-glucosidase\/alpha-galactosidase\tK07406 melA; alpha-galactosidase [EC:3.2.1.22]" }, { "name":"RHO11_03440 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_08105 gatA; (GenBank) PTS galactitol transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_09135 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_09740 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_03445 PTS galactitol transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_08110 gatB; (GenBank) PTS galactitol transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_09145 PTS sugar transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_09745 PTS sugar transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_03450 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_08115 PTS galactitol transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_09140 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_09750 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_08120 alcohol dehydrogenase catalytic domain-containing protein\tK00094 gatD; galactitol-1-phosphate 5-dehydrogenase [EC:1.1.1.251]" }, { "name":"RHO11_11305 sugar kinase\tK21621 fk; tagatose kinase [EC:2.7.1.101]" }, { "name":"RHO11_08095 hexose kinase\tK00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144]" }, { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"RHO11_08100 lacD; (GenBank) tagatose-bisphosphate aldolase\tK01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]" }, { "name":"RHO11_11295 tagatose bisphosphate family class II aldolase\tK08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY\/KbaY [EC:4.1.2.40]" }, { "name":"RHO11_06495 2-dehydro-3-deoxygalactonokinase\tK00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]" }, { "name":"RHO11_06500 2-dehydro-3-deoxy-6-phosphogalactonate aldolase\tK01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]" }, { "name":"RHO11_02660 glycoside hydrolase family 32 protein\tK01193 INV; beta-fructofuranosidase [EC:3.2.1.26]" }, { "name":"RHO11_03840 glycoside hydrolase family 32 protein\tK01193 INV; beta-fructofuranosidase [EC:3.2.1.26]" } ] }, { "name":"00053 Ascorbate and aldarate metabolism [PATH:omo00053]", "children":[ { "name":"RHO11_00655 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_10575 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_11805 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_00650 PTS ascorbate-specific subunit IIBC\tK02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]" }, { "name":"RHO11_11810 PTS sugar transporter subunit IIB\tK02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]" }, { "name":"RHO11_06605 PTS ascorbate transporter subunit IIC\tK03475 ulaA; ascorbate PTS system EIIC component" }, { "name":"RHO11_11815 PTS ascorbate transporter subunit IIC\tK03475 ulaA; ascorbate PTS system EIIC component" }, { "name":"RHO11_00640 ulaG; (GenBank) L-ascorbate 6-phosphate lactonase\tK03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]" }, { "name":"RHO11_00665 3-keto-L-gulonate-6-phosphate decarboxylase UlaD\tK03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]" }, { "name":"RHO11_00670 L-ribulose-5-phosphate 3-epimerase\tK03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]" }, { "name":"RHO11_00660 L-ribulose-5-phosphate 4-epimerase\tK03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]" }, { "name":"RHO11_09760 class II aldolase\/adducin family protein\tK03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]" } ] }, { "name":"00500 Starch and sucrose metabolism [PATH:omo00500]", "children":[ { "name":"RHO11_02660 glycoside hydrolase family 32 protein\tK01193 INV; beta-fructofuranosidase [EC:3.2.1.26]" }, { "name":"RHO11_03840 glycoside hydrolase family 32 protein\tK01193 INV; beta-fructofuranosidase [EC:3.2.1.26]" }, { "name":"RHO11_13000 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"RHO11_04685 PTS lactose\/cellobiose transporter subunit IIA\tK02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]" }, { "name":"RHO11_04680 PTS sugar transporter subunit IIB\tK02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]" }, { "name":"RHO11_04670 PTS transporter subunit EIIC\tK02761 celB; cellobiose PTS system EIIC component" }, { "name":"RHO11_04675 glycoside hydrolase family 1 protein\tK01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]" }, { "name":"RHO11_00540 PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09570 crr; (GenBank) PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09620 malX; (GenBank) maltose\/glucose-specific PTS transporter subunit IIBC\tK02791 malX; maltose\/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]" }, { "name":"RHO11_02480 treB; (GenBank) PTS trehalose transporter subunit IIBC\tK02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]" }, { "name":"RHO11_02475 treC; (GenBank) alpha,alpha-phosphotrehalase\tK01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]" }, { "name":"RHO11_06345 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"RHO11_02975 glucokinase\tK00845 glk; glucokinase [EC:2.7.1.2]" }, { "name":"RHO11_09575 pgi; (GenBank) glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"RHO11_02670 aminoimidazole riboside kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"RHO11_04640 ROK family protein\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" } ] }, { "name":"00620 Pyruvate metabolism [PATH:omo00620]", "children":[ { "name":"RHO11_03785 nifJ; (GenBank) pyruvate:ferredoxin (flavodoxin) oxidoreductase\tK03737 por; pyruvate-ferredoxin\/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.8.1]" }, { "name":"RHO11_00520 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_07315 pflB; (GenBank) formate C-acetyltransferase\tK00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]" }, { "name":"RHO11_11065 adhE; (GenBank) bifunctional acetaldehyde-CoA\/alcohol dehydrogenase\tK04072 adhE; acetaldehyde dehydrogenase \/ alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]" }, { "name":"RHO11_07005 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"RHO11_01555 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" }, { "name":"RHO11_01560 pta; (GenBank) phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"RHO11_02200 pykF; (GenBank) pyruvate kinase PykF\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_04070 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_09315 accA; (GenBank) acetyl-CoA carboxylase carboxyl transferase subunit alpha\tK01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_08380 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein\tK02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein" }, { "name":"RHO11_08375 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit\tK01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]" }, { "name":"RHO11_07825 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta\tK01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_10940 yccX; (GenBank) acylphosphatase\tK01512 acyP; acylphosphatase [EC:3.6.1.7]" }, { "name":"RHO11_07975 FAD-binding oxidoreductase\tK26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436]" }, { "name":"RHO11_00420 L-lactate dehydrogenase\tK00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]" }, { "name":"RHO11_12485 thiamine pyrophosphate-binding protein\tK00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]" }, { "name":"RHO11_12785 2-hydroxyacid dehydrogenase\tK03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]" }, { "name":"RHO11_06360 gloA; (GenBank) lactoylglutathione lyase\tK01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]" }, { "name":"RHO11_03590 gloB; (GenBank) hydroxyacylglutathione hydrolase\tK01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]" }, { "name":"RHO11_06775 MBL fold metallo-hydrolase\tK01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]" }, { "name":"RHO11_11235 glyoxylate\/hydroxypyruvate reductase A\tK12972 ghrA; glyoxylate\/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]" }, { "name":"RHO11_13155 NAD(P)-dependent oxidoreductase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_13160 D-glycerate dehydrogenase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_00825 NADP-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"RHO11_03820 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"RHO11_00060 fumarate hydratase\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"RHO11_05550 frdA; (GenBank) fumarate reductase (quinol) flavoprotein subunit\tK00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"RHO11_05545 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"RHO11_05540 hypothetical protein\tK00246 frdC; succinate dehydrogenase subunit C" }, { "name":"RHO11_05535 frdD; (GenBank) fumarate reductase subunit FrdD\tK00247 frdD; succinate dehydrogenase subunit D" }, { "name":"RHO11_09455 ppc; (GenBank) phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" }, { "name":"RHO11_12720 leuA; (GenBank) 2-isopropylmalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" } ] }, { "name":"00630 Glyoxylate and dicarboxylate metabolism [PATH:omo00630]", "children":[ { "name":"RHO11_00570 citrate\/2-methylcitrate synthase\tK01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]" }, { "name":"RHO11_00560 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"RHO11_05000 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"RHO11_11235 glyoxylate\/hydroxypyruvate reductase A\tK12972 ghrA; glyoxylate\/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]" }, { "name":"RHO11_13155 NAD(P)-dependent oxidoreductase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_13160 D-glycerate dehydrogenase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_08020 phosphoglycolate phosphatase\tK01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]" }, { "name":"RHO11_06280 PLP-dependent aminotransferase family protein\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"RHO11_09450 glnA; (GenBank) glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"RHO11_00120 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_08050 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"RHO11_04090 fucO; (GenBank) lactaldehyde reductase\tK00048 fucO; lactaldehyde reductase [EC:1.1.1.77]" }, { "name":"RHO11_10305 fucO; (GenBank) lactaldehyde reductase\tK00048 fucO; lactaldehyde reductase [EC:1.1.1.77]" }, { "name":"RHO11_10030 bifunctional 4-hydroxy-2-oxoglutarate aldolase\/2-dehydro-3-deoxy-phosphogluconate aldolase\tK01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase \/ (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]" }, { "name":"RHO11_11870 eda; (GenBank) bifunctional 4-hydroxy-2-oxoglutarate aldolase\/2-dehydro-3-deoxy-phosphogluconate aldolase\tK01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase \/ (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]" }, { "name":"RHO11_07185 fdnG; (GenBank) formate dehydrogenase-N subunit alpha\tK00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]" }, { "name":"RHO11_07190 fdxH; (GenBank) formate dehydrogenase subunit beta\tK00124 fdoH; formate dehydrogenase iron-sulfur subunit" }, { "name":"RHO11_07195 formate dehydrogenase subunit gamma\tK00127 fdoI; formate dehydrogenase subunit gamma" }, { "name":"RHO11_03920 oxc; (GenBank) oxalyl-CoA decarboxylase\tK01577 oxc; oxalyl-CoA decarboxylase [EC:4.1.1.8]" }, { "name":"RHO11_01470 frc; (GenBank) formyl-CoA transferase\tK07749 frc; formyl-CoA transferase [EC:2.8.3.16]" }, { "name":"RHO11_03915 frc; (GenBank) formyl-CoA transferase\tK07749 frc; formyl-CoA transferase [EC:2.8.3.16]" } ] }, { "name":"00640 Propanoate metabolism [PATH:omo00640]", "children":[ { "name":"RHO11_01555 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" }, { "name":"RHO11_01560 pta; (GenBank) phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_07315 pflB; (GenBank) formate C-acetyltransferase\tK00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]" }, { "name":"RHO11_13630 MDR family oxidoreductase\tK19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]" }, { "name":"RHO11_09315 accA; (GenBank) acetyl-CoA carboxylase carboxyl transferase subunit alpha\tK01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_08380 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein\tK02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein" }, { "name":"RHO11_08375 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit\tK01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]" }, { "name":"RHO11_07825 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta\tK01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_11345 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"RHO11_12865 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"RHO11_12870 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"RHO11_00570 citrate\/2-methylcitrate synthase\tK01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]" }, { "name":"RHO11_00560 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"RHO11_00420 L-lactate dehydrogenase\tK00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]" }, { "name":"RHO11_07655 methylglyoxal synthase\tK01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]" }, { "name":"RHO11_05795 iron-containing alcohol dehydrogenase\tK08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]" }, { "name":"RHO11_10655 glycerol dehydrogenase\tK00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]" }, { "name":"RHO11_13745 glycerol dehydrogenase\tK00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]" }, { "name":"RHO11_04090 fucO; (GenBank) lactaldehyde reductase\tK00048 fucO; lactaldehyde reductase [EC:1.1.1.77]" }, { "name":"RHO11_10305 fucO; (GenBank) lactaldehyde reductase\tK00048 fucO; lactaldehyde reductase [EC:1.1.1.77]" } ] }, { "name":"00650 Butanoate metabolism [PATH:omo00650]", "children":[ { "name":"RHO11_02345 trans-2-enoyl-CoA reductase family protein\tK00209 fabV; enoyl-[acyl-carrier protein] reductase \/ trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]" }, { "name":"RHO11_11065 adhE; (GenBank) bifunctional acetaldehyde-CoA\/alcohol dehydrogenase\tK04072 adhE; acetaldehyde dehydrogenase \/ alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]" }, { "name":"RHO11_05550 frdA; (GenBank) fumarate reductase (quinol) flavoprotein subunit\tK00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"RHO11_05545 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"RHO11_05540 hypothetical protein\tK00246 frdC; succinate dehydrogenase subunit C" }, { "name":"RHO11_05535 frdD; (GenBank) fumarate reductase subunit FrdD\tK00247 frdD; succinate dehydrogenase subunit D" }, { "name":"RHO11_11345 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"RHO11_10670 yihU; (GenBank) sulfolactaldehyde 3-reductase\tK08318 yihU; 4-hydroxybutyrate dehydrogenase \/ sulfolactaldehyde 3-reductase [EC:1.1.1.61 1.1.1.373]" }, { "name":"RHO11_07315 pflB; (GenBank) formate C-acetyltransferase\tK00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]" }, { "name":"RHO11_03785 nifJ; (GenBank) pyruvate:ferredoxin (flavodoxin) oxidoreductase\tK03737 por; pyruvate-ferredoxin\/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.8.1]" }, { "name":"RHO11_03630 3-hydroxybutyrate oligomer hydrolase family protein\tK07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22]" }, { "name":"RHO11_05025 ilvI; (GenBank) acetolactate synthase 3 large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_06175 ilvB; (GenBank) acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_11890 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_05020 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_06180 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_11895 ilvM; (GenBank) acetolactate synthase 2 small subunit\tK11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]" } ] }, { "name":"00660 C5-Branched dibasic acid metabolism [PATH:omo00660]", "children":[ { "name":"RHO11_05025 ilvI; (GenBank) acetolactate synthase 3 large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_06175 ilvB; (GenBank) acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_11890 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_05020 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_06180 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_11895 ilvM; (GenBank) acetolactate synthase 2 small subunit\tK11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]" }, { "name":"RHO11_12865 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"RHO11_12870 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"RHO11_12730 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit\tK01703 leuC; 3-isopropylmalate\/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"RHO11_12735 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit\tK01704 leuD; 3-isopropylmalate\/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"RHO11_12725 leuB; (GenBank) 3-isopropylmalate dehydrogenase\tK00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]" } ] }, { "name":"00562 Inositol phosphate metabolism [PATH:omo00562]", "children":[ { "name":"RHO11_13010 suhB; (GenBank) inositol-1-monophosphatase\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"RHO11_00095 sugar phosphate isomerase\/epimerase\tK06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11]" }, { "name":"RHO11_00485 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" } ] }, { "name":"00566 Sulfoquinovose metabolism [PATH:omo00566]", "children":[ { "name":"RHO11_10680 alpha-glucosidase\tK15922 yihQ; sulfoquinovosidase [EC:3.2.1.199]" }, { "name":"RHO11_10635 AGE family epimerase\/isomerase\tK18479 yihS; sulfoquinovose isomerase [EC:5.3.1.31]" }, { "name":"RHO11_10665 sugar kinase\tK18478 yihV; sulfofructose kinase [EC:2.7.1.184]" }, { "name":"RHO11_10675 hypothetical protein\tK01671 yihT; sulfofructosephosphate aldolase [EC:4.1.2.57]" }, { "name":"RHO11_10670 yihU; (GenBank) sulfolactaldehyde 3-reductase\tK08318 yihU; 4-hydroxybutyrate dehydrogenase \/ sulfolactaldehyde 3-reductase [EC:1.1.1.61 1.1.1.373]" } ] } ] }, { "name":"09102 Energy metabolism", "children":[ { "name":"00190 Oxidative phosphorylation [PATH:omo00190]", "children":[ { "name":"RHO11_09930 NADH-quinone oxidoreductase subunit J\tK00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]" }, { "name":"RHO11_09925 nuoK; (GenBank) NADH-quinone oxidoreductase subunit NuoK\tK00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]" }, { "name":"RHO11_09920 proton-conducting transporter membrane subunit\tK00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]" }, { "name":"RHO11_09915 NADH-quinone oxidoreductase subunit M\tK00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]" }, { "name":"RHO11_09910 NADH-quinone oxidoreductase subunit N\tK00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]" }, { "name":"RHO11_11105 NAD(P)\/FAD-dependent oxidoreductase\tK03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]" }, { "name":"RHO11_05550 frdA; (GenBank) fumarate reductase (quinol) flavoprotein subunit\tK00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"RHO11_05545 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"RHO11_05540 hypothetical protein\tK00246 frdC; succinate dehydrogenase subunit C" }, { "name":"RHO11_05535 frdD; (GenBank) fumarate reductase subunit FrdD\tK00247 frdD; succinate dehydrogenase subunit D" }, { "name":"RHO11_12875 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"RHO11_12880 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"RHO11_08825 atpA; (GenBank) F0F1 ATP synthase subunit alpha\tK02111 ATPF1A; F-type H+\/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]" }, { "name":"RHO11_08815 atpD; (GenBank) F0F1 ATP synthase subunit beta\tK02112 ATPF1B; F-type H+\/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]" }, { "name":"RHO11_08820 atpG; (GenBank) F0F1 ATP synthase subunit gamma\tK02115 ATPF1G; F-type H+-transporting ATPase subunit gamma" }, { "name":"RHO11_08830 atpH; (GenBank) F0F1 ATP synthase subunit delta\tK02113 ATPF1D; F-type H+-transporting ATPase subunit delta" }, { "name":"RHO11_08810 F0F1 ATP synthase subunit epsilon\tK02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon" }, { "name":"RHO11_08845 atpB; (GenBank) F0F1 ATP synthase subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" }, { "name":"RHO11_08835 atpF; (GenBank) F0F1 ATP synthase subunit B\tK02109 ATPF0B; F-type H+-transporting ATPase subunit b" }, { "name":"RHO11_08840 atpE; (GenBank) F0F1 ATP synthase subunit C\tK02110 ATPF0C; F-type H+-transporting ATPase subunit c" }, { "name":"RHO11_12650 ppa; (GenBank) inorganic diphosphatase\tK01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]" }, { "name":"RHO11_02205 ppk1; (GenBank) polyphosphate kinase 1\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" } ] }, { "name":"00195 Photosynthesis" }, { "name":"00196 Photosynthesis - antenna proteins" }, { "name":"00710 Carbon fixation by Calvin cycle [PATH:omo00710]", "children":[ { "name":"RHO11_08455 pgk; (GenBank) phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"RHO11_00675 gapA; (GenBank) glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"RHO11_08460 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"RHO11_03990 fbp; (GenBank) class 1 fructose-bisphosphatase\tK03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]" }, { "name":"RHO11_00170 tkt; (GenBank) transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_11820 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_11825 transketolase family protein\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_09060 rpiA; (GenBank) ribose-5-phosphate isomerase RpiA\tK01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]" }, { "name":"RHO11_00180 rpiB; (GenBank) ribose 5-phosphate isomerase B\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_03455 RpiB\/LacA\/LacB family sugar-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_10820 RpiB\/LacA\/LacB family sugar-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"RHO11_00485 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"RHO11_08015 rpe; (GenBank) ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_09155 ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_10565 ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"RHO11_00175 tal; (GenBank) transaldolase\tK00616 TALDO1; transaldolase [EC:2.2.1.2]" }, { "name":"RHO11_09455 ppc; (GenBank) phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" } ] }, { "name":"00720 Other carbon fixation pathways [PATH:omo00720]", "children":[ { "name":"RHO11_03785 nifJ; (GenBank) pyruvate:ferredoxin (flavodoxin) oxidoreductase\tK03737 por; pyruvate-ferredoxin\/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.8.1]" }, { "name":"RHO11_09455 ppc; (GenBank) phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" }, { "name":"RHO11_03820 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"RHO11_00060 fumarate hydratase\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"RHO11_05550 frdA; (GenBank) fumarate reductase (quinol) flavoprotein subunit\tK00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"RHO11_05545 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"RHO11_05540 hypothetical protein\tK00246 frdC; succinate dehydrogenase subunit C" }, { "name":"RHO11_05535 frdD; (GenBank) fumarate reductase subunit FrdD\tK00247 frdD; succinate dehydrogenase subunit D" }, { "name":"RHO11_12870 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"RHO11_12865 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"RHO11_00565 icd; (GenBank) NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"RHO11_00560 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"RHO11_09315 accA; (GenBank) acetyl-CoA carboxylase carboxyl transferase subunit alpha\tK01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_08380 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein\tK02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein" }, { "name":"RHO11_08375 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit\tK01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]" }, { "name":"RHO11_07825 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta\tK01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_06255 fdhF; (GenBank) formate dehydrogenase subunit alpha\tK22015 fdhF; formate dehydrogenase (hydrogenase) \/ hydrogen-dependent carbon dioxide reductase [EC:1.17.98.4 1.17.98.5]" }, { "name":"RHO11_09585 formate--tetrahydrofolate ligase\tK01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]" }, { "name":"RHO11_04130 folD; (GenBank) bifunctional methylenetetrahydrofolate dehydrogenase\/methenyltetrahydrofolate cyclohydrolase FolD\tK01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) \/ methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]" }, { "name":"RHO11_09120 metF; (GenBank) methylenetetrahydrofolate reductase [NAD(P)H]\tK00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]" }, { "name":"RHO11_01560 pta; (GenBank) phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"RHO11_01555 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" } ] }, { "name":"00680 Methane metabolism [PATH:omo00680]", "children":[ { "name":"RHO11_07185 fdnG; (GenBank) formate dehydrogenase-N subunit alpha\tK00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]" }, { "name":"RHO11_07190 fdxH; (GenBank) formate dehydrogenase subunit beta\tK00124 fdoH; formate dehydrogenase iron-sulfur subunit" }, { "name":"RHO11_07195 formate dehydrogenase subunit gamma\tK00127 fdoI; formate dehydrogenase subunit gamma" }, { "name":"RHO11_06255 fdhF; (GenBank) formate dehydrogenase subunit alpha\tK22015 fdhF; formate dehydrogenase (hydrogenase) \/ hydrogen-dependent carbon dioxide reductase [EC:1.17.98.4 1.17.98.5]" }, { "name":"RHO11_00120 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"RHO11_05105 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"RHO11_09455 ppc; (GenBank) phosphoenolpyruvate carboxylase\tK01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]" }, { "name":"RHO11_08460 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"RHO11_03990 fbp; (GenBank) class 1 fructose-bisphosphatase\tK03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]" }, { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"RHO11_03435 hxlB; (GenBank) 6-phospho-3-hexuloisomerase\tK08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]" }, { "name":"RHO11_09160 hxlB; (GenBank) 6-phospho-3-hexuloisomerase\tK08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]" }, { "name":"RHO11_10585 hxlB; (GenBank) 6-phospho-3-hexuloisomerase\tK08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]" }, { "name":"RHO11_01555 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" }, { "name":"RHO11_01560 pta; (GenBank) phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"RHO11_03465 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"RHO11_10885 gpmM; (GenBank) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase\tK15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]" }, { "name":"RHO11_13885 apgM; (GenBank) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase\tK15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]" }, { "name":"RHO11_09055 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"RHO11_04200 serC; (GenBank) 3-phosphoserine\/phosphohydroxythreonine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"RHO11_12470 serB; (GenBank) phosphoserine phosphatase\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" } ] }, { "name":"00910 Nitrogen metabolism [PATH:omo00910]", "children":[ { "name":"RHO11_02425 NarK family nitrate\/nitrite MFS transporter\tK02575 NRT2; MFS transporter, NNP family, nitrate\/nitrite transporter" }, { "name":"RHO11_02430 nitrate reductase subunit alpha\tK00370 narG; nitrate reductase \/ nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02435 narH; (GenBank) nitrate reductase subunit beta\tK00371 narH; nitrate reductase \/ nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02445 narI; (GenBank) respiratory nitrate reductase subunit gamma\tK00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_08660 nirB; (GenBank) nitrite reductase large subunit NirB\tK00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]" }, { "name":"RHO11_08665 nirD; (GenBank) nitrite reductase small subunit NirD\tK00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]" }, { "name":"RHO11_04650 hcp; (GenBank) hydroxylamine reductase\tK05601 hcp; hydroxylamine reductase [EC:1.7.99.1]" }, { "name":"RHO11_00435 gdhA; (GenBank) NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"RHO11_09450 glnA; (GenBank) glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"RHO11_11360 gltB; (GenBank) glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"RHO11_11365 FAD-dependent oxidoreductase\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"RHO11_01335 carbamate kinase\tK00926 arcC; carbamate kinase [EC:2.7.2.2]" }, { "name":"RHO11_12390 can; (GenBank) carbonate dehydratase\tK01673 cynT; carbonic anhydrase [EC:4.2.1.1]" }, { "name":"RHO11_08075 carbonic anhydrase family protein\tK01674 cah; carbonic anhydrase [EC:4.2.1.1]" } ] }, { "name":"00920 Sulfur metabolism [PATH:omo00920]", "children":[ { "name":"RHO11_00280 sulfate ABC transporter substrate-binding protein\tK23163 sbp; sulfate\/thiosulfate transport system substrate-binding protein" }, { "name":"RHO11_00285 cysT; (GenBank) sulfate ABC transporter permease subunit CysT\tK02046 cysU; sulfate\/thiosulfate transport system permease protein" }, { "name":"RHO11_00290 cysW; (GenBank) sulfate ABC transporter permease subunit CysW\tK02047 cysW; sulfate\/thiosulfate transport system permease protein" }, { "name":"RHO11_00295 sulfate ABC transporter ATP-binding protein\tK02045 cysA; sulfate\/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]" }, { "name":"RHO11_06325 ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"RHO11_06315 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"RHO11_06320 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"RHO11_00320 sat; (GenBank) sulfate adenylyltransferase\tK00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]" }, { "name":"RHO11_00315 phosphoadenosine phosphosulfate reductase family protein\tK00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]" }, { "name":"RHO11_00310 assimilatory sulfite reductase (NADPH) flavoprotein subunit\tK00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]" }, { "name":"RHO11_00305 cysI; (GenBank) assimilatory sulfite reductase (NADPH) hemoprotein subunit\tK00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]" }, { "name":"RHO11_08345 cysE; (GenBank) serine O-acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" }, { "name":"RHO11_01515 cysK; (GenBank) cysteine synthase A\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"RHO11_08325 metA; (GenBank) homoserine O-succinyltransferase\tK00651 metA; homoserine O-succinyltransferase\/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]" }, { "name":"RHO11_07155 alpha\/beta fold hydrolase\tK00641 metX; homoserine O-acetyltransferase\/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]" }, { "name":"RHO11_07765 metB; (GenBank) cystathionine gamma-synthase\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"RHO11_02495 DMSO\/selenate family reductase complex A subunit\tK07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]" }, { "name":"RHO11_02500 DMSO\/selenate family reductase complex B subunit\tK07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B" }, { "name":"RHO11_02505 DmsC\/YnfH family molybdoenzyme membrane anchor subunit\tK07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C" } ] } ] }, { "name":"09103 Lipid metabolism", "children":[ { "name":"00061 Fatty acid biosynthesis [PATH:omo00061]", "children":[ { "name":"RHO11_09315 accA; (GenBank) acetyl-CoA carboxylase carboxyl transferase subunit alpha\tK01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_08380 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein\tK02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein" }, { "name":"RHO11_08375 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit\tK01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]" }, { "name":"RHO11_07825 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta\tK01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]" }, { "name":"RHO11_06805 acpP; (GenBank) acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_10525 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_10530 phosphopantetheine-binding protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_06815 fabD; (GenBank) ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"RHO11_06820 beta-ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"RHO11_04260 fabB; (GenBank) beta-ketoacyl-ACP synthase I\tK00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]" }, { "name":"RHO11_10480 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]" }, { "name":"RHO11_06800 fabF; (GenBank) beta-ketoacyl-ACP synthase II\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"RHO11_10465 beta-ketoacyl-ACP synthase\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"RHO11_06810 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"RHO11_10470 3-ketoacyl-ACP reductase FabG2\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"RHO11_05765 fabA; (GenBank) bifunctional 3-hydroxydecanoyl-ACP dehydratase\/trans-2-decenoyl-ACP isomerase\tK01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase \/ trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]" }, { "name":"RHO11_09675 fabZ; (GenBank) 3-hydroxyacyl-ACP dehydratase FabZ\tK02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]" }, { "name":"RHO11_02345 trans-2-enoyl-CoA reductase family protein\tK00209 fabV; enoyl-[acyl-carrier protein] reductase \/ trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]" } ] }, { "name":"00062 Fatty acid elongation" }, { "name":"00071 Fatty acid degradation [PATH:omo00071]", "children":[ { "name":"RHO11_06595 aas; (GenBank) bifunctional acyl-ACP--phospholipid O-acyltransferase\/long-chain-fatty-acid--ACP ligase\tK05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase \/ long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]" }, { "name":"RHO11_11065 adhE; (GenBank) bifunctional acetaldehyde-CoA\/alcohol dehydrogenase\tK04072 adhE; acetaldehyde dehydrogenase \/ alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]" }, { "name":"RHO11_07005 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" } ] }, { "name":"00073 Cutin, suberine and wax biosynthesis" }, { "name":"00074 Mycolic acid biosynthesis", "children":[ { "name":"RHO11_06805 acpP; (GenBank) acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_10525 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_10530 phosphopantetheine-binding protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_06815 fabD; (GenBank) ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" } ] }, { "name":"00100 Steroid biosynthesis" }, { "name":"00120 Primary bile acid biosynthesis" }, { "name":"00121 Secondary bile acid biosynthesis" }, { "name":"00140 Steroid hormone biosynthesis" }, { "name":"00561 Glycerolipid metabolism [PATH:omo00561]", "children":[ { "name":"RHO11_08050 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"RHO11_09765 dihydroxyacetone kinase subunit DhaK\tK05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]" }, { "name":"RHO11_09780 dihydroxyacetone kinase subunit DhaK\tK05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]" }, { "name":"RHO11_10650 dhaK; (GenBank) dihydroxyacetone kinase subunit DhaK\tK05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]" }, { "name":"RHO11_09770 dihydroxyacetone kinase subunit L\tK05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]" }, { "name":"RHO11_09775 dhaL; (GenBank) dihydroxyacetone kinase subunit DhaL\tK05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]" }, { "name":"RHO11_10645 dhaL; (GenBank) dihydroxyacetone kinase subunit DhaL\tK05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]" }, { "name":"RHO11_10640 dhaM; (GenBank) dihydroxyacetone kinase phosphoryl donor subunit DhaM\tK05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]" }, { "name":"RHO11_10655 glycerol dehydrogenase\tK00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]" }, { "name":"RHO11_13745 glycerol dehydrogenase\tK00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]" }, { "name":"RHO11_10860 plsB; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsB\tK00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]" }, { "name":"RHO11_06825 plsX; (GenBank) phosphate acyltransferase PlsX\tK03621 plsX; phosphate acyltransferase [EC:2.3.1.274]" }, { "name":"RHO11_12895 plsY; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsY\tK08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]" }, { "name":"RHO11_13795 1-acylglycerol-3-phosphate O-acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"RHO11_09320 diacylglycerol kinase\tK00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]" }, { "name":"RHO11_08195 alpha-glucosidase\/alpha-galactosidase\tK07406 melA; alpha-galactosidase [EC:3.2.1.22]" } ] }, { "name":"00564 Glycerophospholipid metabolism [PATH:omo00564]", "children":[ { "name":"RHO11_08340 gpsA; (GenBank) NAD(P)H-dependent glycerol-3-phosphate dehydrogenase\tK00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]" }, { "name":"RHO11_10860 plsB; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsB\tK00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]" }, { "name":"RHO11_12895 plsY; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsY\tK08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]" }, { "name":"RHO11_13795 1-acylglycerol-3-phosphate O-acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"RHO11_09320 diacylglycerol kinase\tK00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]" }, { "name":"RHO11_02340 phospholipase A\tK01058 pldA; phospholipase A1\/A2 [EC:3.1.1.32 3.1.1.4]" }, { "name":"RHO11_06595 aas; (GenBank) bifunctional acyl-ACP--phospholipid O-acyltransferase\/long-chain-fatty-acid--ACP ligase\tK05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase \/ long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]" }, { "name":"RHO11_07105 phosphatidate cytidylyltransferase\tK00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]" }, { "name":"RHO11_07890 phosphatidate cytidylyltransferase\tK00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]" }, { "name":"RHO11_04155 pssA; (GenBank) CDP-diacylglycerol--serine O-phosphatidyltransferase\tK00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]" }, { "name":"RHO11_00355 asd; (GenBank) archaetidylserine decarboxylase\tK01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]" }, { "name":"RHO11_03190 pgsA; (GenBank) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase\tK00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]" }, { "name":"RHO11_12265 phosphatidylglycerophosphatase A\tK01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]" }, { "name":"RHO11_03120 phosphatase PAP2 family protein\tK01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]" }, { "name":"RHO11_12840 cls; (GenBank) cardiolipin synthase\tK06131 clsA_B; cardiolipin synthase A\/B [EC:2.7.8.-]" }, { "name":"RHO11_05575 phospholipase D family protein\tK06132 clsC; cardiolipin synthase C [EC:2.7.8.-]" } ] }, { "name":"00565 Ether lipid metabolism [PATH:omo00565]", "children":[ { "name":"RHO11_02340 phospholipase A\tK01058 pldA; phospholipase A1\/A2 [EC:3.1.1.32 3.1.1.4]" } ] }, { "name":"00600 Sphingolipid metabolism [PATH:omo00600]", "children":[ { "name":"RHO11_08895 beta-galactosidase\tK01190 lacZ; beta-galactosidase [EC:3.2.1.23]" }, { "name":"RHO11_08195 alpha-glucosidase\/alpha-galactosidase\tK07406 melA; alpha-galactosidase [EC:3.2.1.22]" } ] }, { "name":"00590 Arachidonic acid metabolism", "children":[ { "name":"RHO11_02340 phospholipase A\tK01058 pldA; phospholipase A1\/A2 [EC:3.1.1.32 3.1.1.4]" } ] }, { "name":"00591 Linoleic acid metabolism", "children":[ { "name":"RHO11_02340 phospholipase A\tK01058 pldA; phospholipase A1\/A2 [EC:3.1.1.32 3.1.1.4]" } ] }, { "name":"00592 alpha-Linolenic acid metabolism [PATH:omo00592]", "children":[ { "name":"RHO11_02340 phospholipase A\tK01058 pldA; phospholipase A1\/A2 [EC:3.1.1.32 3.1.1.4]" } ] }, { "name":"01040 Biosynthesis of unsaturated fatty acids", "children":[ { "name":"RHO11_12845 yciA; (GenBank) acyl-CoA thioester hydrolase YciA\tK10806 yciA; acyl-CoA thioesterase [EC:3.1.2.-]" } ] } ] }, { "name":"09104 Nucleotide metabolism", "children":[ { "name":"00230 Purine metabolism [PATH:omo00230]", "children":[ { "name":"RHO11_12830 nudF; (GenBank) ADP-ribose diphosphatase\tK01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]" }, { "name":"RHO11_05955 deoB; (GenBank) phosphopentomutase\tK01839 deoB; phosphopentomutase [EC:5.4.2.7]" }, { "name":"RHO11_06345 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"RHO11_13785 ribose-phosphate pyrophosphokinase\tK00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]" }, { "name":"RHO11_07805 purF; (GenBank) amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" }, { "name":"RHO11_08085 purD; (GenBank) phosphoribosylamine--glycine ligase\tK01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]" }, { "name":"RHO11_06615 purN; (GenBank) phosphoribosylglycinamide formyltransferase\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"RHO11_07340 purL; (GenBank) phosphoribosylformylglycinamidine synthase\tK01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]" }, { "name":"RHO11_06610 purM; (GenBank) phosphoribosylformylglycinamidine cyclo-ligase\tK01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]" }, { "name":"RHO11_12185 purK; (GenBank) 5-(carboxyamino)imidazole ribonucleotide synthase\tK01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]" }, { "name":"RHO11_12180 purE; (GenBank) 5-(carboxyamino)imidazole ribonucleotide mutase\tK01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]" }, { "name":"RHO11_04020 phosphoribosylaminoimidazolesuccinocarboxamide synthase\tK01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]" }, { "name":"RHO11_00460 purB; (GenBank) adenylosuccinate lyase\tK01756 purB; adenylosuccinate lyase [EC:4.3.2.2]" }, { "name":"RHO11_08080 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"RHO11_01220 apt; (GenBank) adenine phosphoribosyltransferase\tK00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]" }, { "name":"RHO11_03140 surE; (GenBank) 5'\/3'-nucleotidase SurE\tK03787 surE; 5'\/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]" }, { "name":"RHO11_05935 purine-nucleoside phosphorylase\tK03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"RHO11_12125 deoD; (GenBank) purine-nucleoside phosphorylase\tK03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"RHO11_11210 ppnP; (GenBank) pyrimidine\/purine nucleoside phosphorylase\tK09913 ppnP; purine\/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]" }, { "name":"RHO11_12080 pgeF; (GenBank) peptidoglycan editing factor PgeF\tK05810 LACC1; purine-nucleoside\/S-methyl-5'-thioadenosine phosphorylase \/ adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]" }, { "name":"RHO11_06075 hpt; (GenBank) hypoxanthine phosphoribosyltransferase\tK00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]" }, { "name":"RHO11_06125 guaB; (GenBank) IMP dehydrogenase\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"RHO11_06625 ndk; (GenBank) nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"RHO11_05060 XTP\/dITP diphosphatase\tK01519 rdgB; XTP\/dITP diphosphohydrolase [EC:3.6.1.66]" }, { "name":"RHO11_00995 gpt; (GenBank) xanthine phosphoribosyltransferase\tK00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]" }, { "name":"RHO11_01565 guaA; (GenBank) glutamine-hydrolyzing GMP synthase\tK01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]" }, { "name":"RHO11_12710 gmk; (GenBank) guanylate kinase\tK00942 gmk; guanylate kinase [EC:2.7.4.8]" }, { "name":"RHO11_11525 nrdA; (GenBank) class 1a ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"RHO11_11520 nrdB; (GenBank) class Ia ribonucleoside-diphosphate reductase subunit beta\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" }, { "name":"RHO11_12380 nrdD; (GenBank) anaerobic ribonucleoside-triphosphate reductase\tK21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]" }, { "name":"RHO11_12190 dgt; (GenBank) dGTPase\tK01129 dgt; dGTPase [EC:3.1.5.1]" }, { "name":"RHO11_05830 yfbR; (GenBank) 5'-deoxynucleotidase\tK08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]" }, { "name":"RHO11_13200 hypothetical protein\tK06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]" }, { "name":"RHO11_12700 spoT; (GenBank) bifunctional GTP diphosphokinase\/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase\tK01139 spoT; GTP diphosphokinase \/ guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]" }, { "name":"RHO11_02210 exopolyphosphatase\tK01524 ppx-gppA; exopolyphosphatase \/ guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]" }, { "name":"RHO11_08500 relA; (GenBank) GTP diphosphokinase\tK00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]" }, { "name":"RHO11_04590 class I adenylate cyclase\tK05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]" }, { "name":"RHO11_11670 adenylosuccinate synthase\tK01939 purA; adenylosuccinate synthase [EC:6.3.4.4]" }, { "name":"RHO11_09350 ppnN; (GenBank) nucleotide 5'-monophosphate nucleosidase PpnN\tK06966 ppnN; pyrimidine\/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]" }, { "name":"RHO11_03755 adenine deaminase C-terminal domain-containing protein\tK01486 ade; adenine deaminase [EC:3.5.4.2]" }, { "name":"RHO11_03760 ade; (GenBank) adenine deaminase\tK01486 ade; adenine deaminase [EC:3.5.4.2]" }, { "name":"RHO11_08770 adk; (GenBank) adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" }, { "name":"RHO11_05070 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase\tK04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]" }, { "name":"RHO11_12835 cpdA; (GenBank) 3',5'-cyclic-AMP phosphodiesterase\tK03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]" }, { "name":"RHO11_04225 apaH; (GenBank) bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH\tK01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]" }, { "name":"RHO11_00320 sat; (GenBank) sulfate adenylyltransferase\tK00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]" }, { "name":"RHO11_01310 allB; (GenBank) allantoinase AllB\tK01466 allB; allantoinase [EC:3.5.2.5]" }, { "name":"RHO11_01295 allC; (GenBank) allantoate deiminase\tK02083 allC; allantoate deiminase [EC:3.5.3.9]" }, { "name":"RHO11_01290 alanine--glyoxylate aminotransferase family protein\tK00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]" }, { "name":"RHO11_01300 allE; (GenBank) (S)-ureidoglycine aminohydrolase\tK14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]" }, { "name":"RHO11_01340 allD; (GenBank) ureidoglycolate dehydrogenase\tK00073 allD; ureidoglycolate dehydrogenase (NAD+) [EC:1.1.1.350]" }, { "name":"RHO11_01330 fdrA; (GenBank) acyl-CoA synthetase FdrA\tK02381 allF; oxamate carbamoyltransferase subunit AllF [EC:2.1.3.5]" }, { "name":"RHO11_01325 DUF1116 domain-containing protein\tK28794 allG; oxamate carbamoyltransferase subunit AllG [EC:2.1.3.5]" }, { "name":"RHO11_01320 DUF2877 domain-containing protein\tK28795 allH; oxamate carbamoyltransferase subunit AllH [EC:2.1.3.5]" }, { "name":"RHO11_01335 carbamate kinase\tK00926 arcC; carbamate kinase [EC:2.7.2.2]" } ] }, { "name":"00240 Pyrimidine metabolism [PATH:omo00240]", "children":[ { "name":"RHO11_03045 ATP-grasp domain-containing protein\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"RHO11_12250 carB; (GenBank) carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"RHO11_12255 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"RHO11_00085 pyrC; (GenBank) dihydroorotase\tK01465 URA4; dihydroorotase [EC:3.5.2.3]" }, { "name":"RHO11_13660 amidohydrolase\/deacetylase family metallohydrolase\tK01465 URA4; dihydroorotase [EC:3.5.2.3]" }, { "name":"RHO11_00080 dihydroorotate dehydrogenase\tK17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]" }, { "name":"RHO11_00075 dihydroorotate dehydrogenase electron transfer subunit\tK02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit" }, { "name":"RHO11_02620 pyrE; (GenBank) orotate phosphoribosyltransferase\tK00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]" }, { "name":"RHO11_12755 pyrF; (GenBank) orotidine-5'-phosphate decarboxylase\tK01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]" }, { "name":"RHO11_09265 pyrH; (GenBank) UMP kinase\tK09903 pyrH; uridylate kinase [EC:2.7.4.22]" }, { "name":"RHO11_06625 ndk; (GenBank) nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"RHO11_05070 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase\tK04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]" }, { "name":"RHO11_05110 pyrG; (GenBank) CTP synthase (glutamine hydrolyzing)\tK01937 pyrG; CTP synthase [EC:6.3.4.2]" }, { "name":"RHO11_05445 cmk; (GenBank) (d)CMP kinase\tK00945 cmk; CMP\/dCMP kinase [EC:2.7.4.25]" }, { "name":"RHO11_03140 surE; (GenBank) 5'\/3'-nucleotidase SurE\tK03787 surE; 5'\/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]" }, { "name":"RHO11_10335 nucleoside phosphorylase\tK00757 udp; uridine phosphorylase [EC:2.4.2.3]" }, { "name":"RHO11_11210 ppnP; (GenBank) pyrimidine\/purine nucleoside phosphorylase\tK09913 ppnP; purine\/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]" }, { "name":"RHO11_08975 upp; (GenBank) uracil phosphoribosyltransferase\tK00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]" }, { "name":"RHO11_09350 ppnN; (GenBank) nucleotide 5'-monophosphate nucleosidase PpnN\tK06966 ppnN; pyrimidine\/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]" }, { "name":"RHO11_11045 cytosine deaminase\tK01485 codA; cytosine\/creatinine deaminase [EC:3.5.4.1 3.5.4.21]" }, { "name":"RHO11_12380 nrdD; (GenBank) anaerobic ribonucleoside-triphosphate reductase\tK21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]" }, { "name":"RHO11_07280 dcd; (GenBank) dCTP deaminase\tK01494 dcd; dCTP deaminase [EC:3.5.4.13]" }, { "name":"RHO11_11525 nrdA; (GenBank) class 1a ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"RHO11_11520 nrdB; (GenBank) class Ia ribonucleoside-diphosphate reductase subunit beta\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" }, { "name":"RHO11_05830 yfbR; (GenBank) 5'-deoxynucleotidase\tK08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]" }, { "name":"RHO11_13200 hypothetical protein\tK06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]" }, { "name":"RHO11_12765 tmk; (GenBank) dTMP kinase\tK00943 tmk; dTMP kinase [EC:2.7.4.9]" }, { "name":"RHO11_08360 dut; (GenBank) dUTP diphosphatase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]" }, { "name":"RHO11_06865 thyA; (GenBank) thymidylate synthase\tK00560 thyA; thymidylate synthase [EC:2.1.1.45]" }, { "name":"RHO11_11150 SDR family oxidoreductase\tK16066 ydfG; 3-hydroxy acid dehydrogenase \/ malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]" } ] } ] }, { "name":"09105 Amino acid metabolism", "children":[ { "name":"00250 Alanine, aspartate and glutamate metabolism [PATH:omo00250]", "children":[ { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_04235 asnA; (GenBank) aspartate--ammonia ligase\tK01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]" }, { "name":"RHO11_08615 asnB; (GenBank) asparagine synthase B\tK01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]" }, { "name":"RHO11_11535 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"RHO11_00070 aspA; (GenBank) aspartate ammonia-lyase\tK01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]" }, { "name":"RHO11_12630 argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"RHO11_12635 argH; (GenBank) argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"RHO11_11670 adenylosuccinate synthase\tK01939 purA; adenylosuccinate synthase [EC:6.3.4.4]" }, { "name":"RHO11_00460 purB; (GenBank) adenylosuccinate lyase\tK01756 purB; adenylosuccinate lyase [EC:4.3.2.2]" }, { "name":"RHO11_11345 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"RHO11_11360 gltB; (GenBank) glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"RHO11_11365 FAD-dependent oxidoreductase\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"RHO11_00435 gdhA; (GenBank) NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"RHO11_09450 glnA; (GenBank) glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"RHO11_03045 ATP-grasp domain-containing protein\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"RHO11_12250 carB; (GenBank) carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"RHO11_12255 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"RHO11_09410 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"RHO11_07805 purF; (GenBank) amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" } ] }, { "name":"00260 Glycine, serine and threonine metabolism [PATH:omo00260]", "children":[ { "name":"RHO11_05705 lysC; (GenBank) lysine-sensitive aspartokinase 3\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"RHO11_11135 thrA; (GenBank) bifunctional aspartate kinase\/homoserine dehydrogenase I\tK12524 thrA; bifunctional aspartokinase \/ homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]" }, { "name":"RHO11_09170 asd; (GenBank) aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"RHO11_11130 thrB; (GenBank) homoserine kinase\tK00872 thrB; homoserine kinase [EC:2.7.1.39]" }, { "name":"RHO11_11125 thrC; (GenBank) threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"RHO11_03650 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK01620 ltaE; threonine aldolase [EC:4.1.2.48]" }, { "name":"RHO11_00120 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"RHO11_11235 glyoxylate\/hydroxypyruvate reductase A\tK12972 ghrA; glyoxylate\/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]" }, { "name":"RHO11_13155 NAD(P)-dependent oxidoreductase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_13160 D-glycerate dehydrogenase\tK00090 ghrB; glyoxylate\/hydroxypyruvate\/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]" }, { "name":"RHO11_08050 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"RHO11_03465 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"RHO11_10885 gpmM; (GenBank) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase\tK15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]" }, { "name":"RHO11_13885 apgM; (GenBank) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase\tK15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]" }, { "name":"RHO11_09055 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"RHO11_04200 serC; (GenBank) 3-phosphoserine\/phosphohydroxythreonine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"RHO11_12470 serB; (GenBank) phosphoserine phosphatase\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" }, { "name":"RHO11_11150 SDR family oxidoreductase\tK16066 ydfG; 3-hydroxy acid dehydrogenase \/ malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_04155 pssA; (GenBank) CDP-diacylglycerol--serine O-phosphatidyltransferase\tK00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]" }, { "name":"RHO11_09300 L-serine ammonia-lyase\tK01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]" }, { "name":"RHO11_11910 ilvA; (GenBank) threonine ammonia-lyase, biosynthetic\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"RHO11_03610 amino acid racemase\tK25316 racX; amino-acid racemase [EC:5.1.1.10]" }, { "name":"RHO11_08555 trpA; (GenBank) tryptophan synthase subunit alpha\tK01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]" }, { "name":"RHO11_08550 trpB; (GenBank) tryptophan synthase subunit beta\tK01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"RHO11_05165 diaminobutyrate--2-oxoglutarate transaminase family protein\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"RHO11_05160 aspartate aminotransferase family protein\tK13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]" } ] }, { "name":"00270 Cysteine and methionine metabolism [PATH:omo00270]", "children":[ { "name":"RHO11_08345 cysE; (GenBank) serine O-acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" }, { "name":"RHO11_01515 cysK; (GenBank) cysteine synthase A\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"RHO11_08855 metC; (GenBank) cystathionine beta-lyase\tK01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"RHO11_09615 MalY\/PatB family protein\tK14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"RHO11_03860 mmuM; (GenBank) homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" }, { "name":"RHO11_09125 metE; (GenBank) 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase\tK00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]" }, { "name":"RHO11_12400 metK; (GenBank) methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"RHO11_12915 mtnN; (GenBank) 5'-methylthioadenosine\/S-adenosylhomocysteine nucleosidase\tK01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]" }, { "name":"RHO11_12080 pgeF; (GenBank) peptidoglycan editing factor PgeF\tK05810 LACC1; purine-nucleoside\/S-methyl-5'-thioadenosine phosphorylase \/ adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]" }, { "name":"RHO11_12985 amino acid aminotransferase\tK00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]" }, { "name":"RHO11_01055 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_01630 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_13510 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_00395 luxS; (GenBank) S-ribosylhomocysteine lyase\tK07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]" }, { "name":"RHO11_05705 lysC; (GenBank) lysine-sensitive aspartokinase 3\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"RHO11_11135 thrA; (GenBank) bifunctional aspartate kinase\/homoserine dehydrogenase I\tK12524 thrA; bifunctional aspartokinase \/ homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]" }, { "name":"RHO11_09170 asd; (GenBank) aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"RHO11_11130 thrB; (GenBank) homoserine kinase\tK00872 thrB; homoserine kinase [EC:2.7.1.39]" }, { "name":"RHO11_08325 metA; (GenBank) homoserine O-succinyltransferase\tK00651 metA; homoserine O-succinyltransferase\/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]" }, { "name":"RHO11_07155 alpha\/beta fold hydrolase\tK00641 metX; homoserine O-acetyltransferase\/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]" }, { "name":"RHO11_07765 metB; (GenBank) cystathionine gamma-synthase\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"RHO11_11900 branched-chain amino acid transaminase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"RHO11_03605 gshA; (GenBank) glutamate--cysteine ligase\tK01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]" }, { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_00420 L-lactate dehydrogenase\tK00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]" }, { "name":"RHO11_03610 amino acid racemase\tK25316 racX; amino-acid racemase [EC:5.1.1.10]" }, { "name":"RHO11_09300 L-serine ammonia-lyase\tK01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]" }, { "name":"RHO11_09055 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"RHO11_04200 serC; (GenBank) 3-phosphoserine\/phosphohydroxythreonine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" } ] }, { "name":"00280 Valine, leucine and isoleucine degradation [PATH:omo00280]", "children":[ { "name":"RHO11_11900 branched-chain amino acid transaminase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_11345 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" } ] }, { "name":"00290 Valine, leucine and isoleucine biosynthesis [PATH:omo00290]", "children":[ { "name":"RHO11_11910 ilvA; (GenBank) threonine ammonia-lyase, biosynthetic\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"RHO11_12730 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit\tK01703 leuC; 3-isopropylmalate\/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"RHO11_12735 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit\tK01704 leuD; 3-isopropylmalate\/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"RHO11_12725 leuB; (GenBank) 3-isopropylmalate dehydrogenase\tK00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]" }, { "name":"RHO11_05025 ilvI; (GenBank) acetolactate synthase 3 large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_06175 ilvB; (GenBank) acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_11890 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_05020 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_06180 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_11895 ilvM; (GenBank) acetolactate synthase 2 small subunit\tK11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]" }, { "name":"RHO11_05140 ilvC; (GenBank) ketol-acid reductoisomerase\tK00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]" }, { "name":"RHO11_11905 ilvD; (GenBank) dihydroxy-acid dehydratase\tK01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]" }, { "name":"RHO11_11900 branched-chain amino acid transaminase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"RHO11_11535 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"RHO11_12720 leuA; (GenBank) 2-isopropylmalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" } ] }, { "name":"00300 Lysine biosynthesis [PATH:omo00300]", "children":[ { "name":"RHO11_05705 lysC; (GenBank) lysine-sensitive aspartokinase 3\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"RHO11_11135 thrA; (GenBank) bifunctional aspartate kinase\/homoserine dehydrogenase I\tK12524 thrA; bifunctional aspartokinase \/ homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]" }, { "name":"RHO11_09170 asd; (GenBank) aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"RHO11_00610 dihydrodipicolinate synthase family protein\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"RHO11_04030 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"RHO11_13575 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase\tK00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]" }, { "name":"RHO11_05555 dapD; (GenBank) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase\tK00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]" }, { "name":"RHO11_09650 aspartate aminotransferase family protein\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"RHO11_04175 dapE; (GenBank) succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"RHO11_02865 dapF; (GenBank) diaminopimelate epimerase\tK01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]" }, { "name":"RHO11_02870 lysA; (GenBank) diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"RHO11_06280 PLP-dependent aminotransferase family protein\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"RHO11_05890 murE; (GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"RHO11_05885 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" } ] }, { "name":"00310 Lysine degradation [PATH:omo00310]", "children":[ { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_03610 amino acid racemase\tK25316 racX; amino-acid racemase [EC:5.1.1.10]" }, { "name":"RHO11_06555 lysine decarboxylase LdcC\tK01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18]" }, { "name":"RHO11_11345 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"RHO11_03725 FAD-binding and (Fe-S)-binding domain-containing protein\tK26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]" } ] }, { "name":"00220 Arginine biosynthesis [PATH:omo00220]", "children":[ { "name":"RHO11_12260 argF; (GenBank) ornithine carbamoyltransferase\tK00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]" }, { "name":"RHO11_12630 argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"RHO11_12635 argH; (GenBank) argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"RHO11_09450 glnA; (GenBank) glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"RHO11_03045 ATP-grasp domain-containing protein\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"RHO11_12250 carB; (GenBank) carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"RHO11_12255 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"RHO11_01335 carbamate kinase\tK00926 arcC; carbamate kinase [EC:2.7.2.2]" }, { "name":"RHO11_00435 gdhA; (GenBank) NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_11535 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"RHO11_09415 argA; (GenBank) amino-acid N-acetyltransferase\tK14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]" }, { "name":"RHO11_12625 argB; (GenBank) acetylglutamate kinase\tK00930 argB; acetylglutamate kinase [EC:2.7.2.8]" }, { "name":"RHO11_12620 argC; (GenBank) N-acetyl-gamma-glutamyl-phosphate reductase\tK00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]" }, { "name":"RHO11_09650 aspartate aminotransferase family protein\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"RHO11_04985 argE; (GenBank) acetylornithine deacetylase\tK01438 argE; acetylornithine deacetylase [EC:3.5.1.16]" } ] }, { "name":"00330 Arginine and proline metabolism [PATH:omo00330]", "children":[ { "name":"RHO11_11045 cytosine deaminase\tK01485 codA; cytosine\/creatinine deaminase [EC:3.5.4.1 3.5.4.21]" }, { "name":"RHO11_01260 proC; (GenBank) pyrroline-5-carboxylate reductase\tK00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]" }, { "name":"RHO11_08130 proC; (GenBank) pyrroline-5-carboxylate reductase\tK00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]" }, { "name":"RHO11_01005 proB; (GenBank) glutamate 5-kinase\tK00931 proB; glutamate 5-kinase [EC:2.7.2.11]" }, { "name":"RHO11_01015 proA; (GenBank) glutamate-5-semialdehyde dehydrogenase\tK00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]" }, { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" } ] }, { "name":"00340 Histidine metabolism [PATH:omo00340]", "children":[ { "name":"RHO11_03655 hisG; (GenBank) ATP phosphoribosyltransferase\tK00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]" }, { "name":"RHO11_03690 hisIE; (GenBank) bifunctional phosphoribosyl-AMP cyclohydrolase\/phosphoribosyl-ATP diphosphatase HisIE\tK11755 hisIE; phosphoribosyl-AMP cyclohydrolase \/ phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]" }, { "name":"RHO11_03680 hisA; (GenBank) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase\tK01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]" }, { "name":"RHO11_03675 hisH; (GenBank) imidazole glycerol phosphate synthase subunit HisH\tK02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]" }, { "name":"RHO11_03685 hisF; (GenBank) imidazole glycerol phosphate synthase subunit HisF\tK02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]" }, { "name":"RHO11_03670 hisB; (GenBank) bifunctional histidinol-phosphatase\/imidazoleglycerol-phosphate dehydratase HisB\tK01089 hisB; imidazoleglycerol-phosphate dehydratase \/ histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]" }, { "name":"RHO11_03665 hisC; (GenBank) histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"RHO11_03660 hisD; (GenBank) histidinol dehydrogenase\tK00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]" }, { "name":"RHO11_03605 gshA; (GenBank) glutamate--cysteine ligase\tK01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]" } ] }, { "name":"00350 Tyrosine metabolism [PATH:omo00350]", "children":[ { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_03665 hisC; (GenBank) histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"RHO11_12985 amino acid aminotransferase\tK00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]" }, { "name":"RHO11_11065 adhE; (GenBank) bifunctional acetaldehyde-CoA\/alcohol dehydrogenase\tK04072 adhE; acetaldehyde dehydrogenase \/ alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]" }, { "name":"RHO11_07005 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" } ] }, { "name":"00360 Phenylalanine metabolism [PATH:omo00360]", "children":[ { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_03665 hisC; (GenBank) histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"RHO11_12985 amino acid aminotransferase\tK00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]" } ] }, { "name":"00380 Tryptophan metabolism [PATH:omo00380]", "children":[ { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_05000 catalase\tK03781 katE; catalase [EC:1.11.1.6]" } ] }, { "name":"00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:omo00400]", "children":[ { "name":"RHO11_07295 3-deoxy-7-phosphoheptulonate synthase\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"RHO11_10965 aroG; (GenBank) 3-deoxy-7-phosphoheptulonate synthase AroG\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"RHO11_13525 aroB; (GenBank) 3-dehydroquinate synthase\tK01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]" }, { "name":"RHO11_05385 aroD; (GenBank) type I 3-dehydroquinate dehydratase\tK03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]" }, { "name":"RHO11_09220 shikimate 5-dehydrogenase\tK00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]" }, { "name":"RHO11_12605 membrane-bound PQQ-dependent dehydrogenase, glucose\/quinate\/shikimate family\tK05358 quiA; quinate dehydrogenase (quinone) [EC:1.1.5.8]" }, { "name":"RHO11_05410 aroL; (GenBank) shikimate kinase AroL\tK00891 aroK; shikimate kinase [EC:2.7.1.71]" }, { "name":"RHO11_08000 aroK; (GenBank) shikimate kinase AroK\tK00891 aroK; shikimate kinase [EC:2.7.1.71]" }, { "name":"RHO11_04990 aroA; (GenBank) 3-phosphoshikimate 1-carboxyvinyltransferase\tK00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]" }, { "name":"RHO11_00110 aroC; (GenBank) chorismate synthase\tK01736 aroC; chorismate synthase [EC:4.2.3.5]" }, { "name":"RHO11_08535 anthranilate synthase component 1\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" }, { "name":"RHO11_08540 trpD; (GenBank) bifunctional anthranilate synthase glutamate amidotransferase component TrpG\/anthranilate phosphoribosyltransferase TrpD\tK13497 trpGD; anthranilate synthase\/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]" }, { "name":"RHO11_08545 trpCF; (GenBank) bifunctional indole-3-glycerol-phosphate synthase TrpC\/phosphoribosylanthranilate isomerase TrpF\tK13498 trpCF; indole-3-glycerol phosphate synthase \/ phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]" }, { "name":"RHO11_08555 trpA; (GenBank) tryptophan synthase subunit alpha\tK01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]" }, { "name":"RHO11_08550 trpB; (GenBank) tryptophan synthase subunit beta\tK01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"RHO11_11795 tyrA; (GenBank) bifunctional chorismate mutase\/prephenate dehydrogenase\tK14187 tyrA; chorismate mutase \/ prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]" }, { "name":"RHO11_07385 pheA; (GenBank) bifunctional chorismate mutase\/prephenate dehydratase\tK14170 pheA; chorismate mutase \/ prephenate dehydratase [EC:5.4.99.5 4.2.1.51]" }, { "name":"RHO11_01230 transporter substrate-binding domain-containing protein\tK01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]" }, { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_03665 hisC; (GenBank) histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"RHO11_12985 amino acid aminotransferase\tK00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]" } ] } ] }, { "name":"09106 Metabolism of other amino acids", "children":[ { "name":"00410 beta-Alanine metabolism", "children":[ { "name":"RHO11_11345 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" } ] }, { "name":"00430 Taurine and hypotaurine metabolism [PATH:omo00430]", "children":[ { "name":"RHO11_01560 pta; (GenBank) phosphate acetyltransferase\tK13788 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"RHO11_01555 acetate kinase\tK00925 ackA; acetate kinase [EC:2.7.2.1]" } ] }, { "name":"00440 Phosphonate and phosphinate metabolism", "children":[ { "name":"RHO11_05120 MBL fold metallo-hydrolase\tK06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]" } ] }, { "name":"00450 Selenocompound metabolism [PATH:omo00450]", "children":[ { "name":"RHO11_07765 metB; (GenBank) cystathionine gamma-synthase\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"RHO11_08855 metC; (GenBank) cystathionine beta-lyase\tK01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"RHO11_09615 MalY\/PatB family protein\tK14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"RHO11_09125 metE; (GenBank) 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase\tK00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]" }, { "name":"RHO11_05615 trxB; (GenBank) thioredoxin-disulfide reductase\tK00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]" }, { "name":"RHO11_00320 sat; (GenBank) sulfate adenylyltransferase\tK00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]" }, { "name":"RHO11_13665 DgaE family pyridoxal phosphate-dependent ammonia lyase\tK01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]" }, { "name":"RHO11_12500 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" } ] }, { "name":"00460 Cyanoamino acid metabolism [PATH:omo00460]", "children":[ { "name":"RHO11_04235 asnA; (GenBank) aspartate--ammonia ligase\tK01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]" }, { "name":"RHO11_00120 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" } ] }, { "name":"00470 D-Amino acid metabolism [PATH:omo00470]", "children":[ { "name":"RHO11_06270 alr; (GenBank) alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"RHO11_05855 D-alanine--D-alanine ligase\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"RHO11_03610 amino acid racemase\tK25316 racX; amino-acid racemase [EC:5.1.1.10]" }, { "name":"RHO11_12405 murI; (GenBank) glutamate racemase\tK01776 murI; glutamate racemase [EC:5.1.1.3]" }, { "name":"RHO11_05875 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"RHO11_02865 dapF; (GenBank) diaminopimelate epimerase\tK01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]" }, { "name":"RHO11_02870 lysA; (GenBank) diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" } ] }, { "name":"00480 Glutathione metabolism [PATH:omo00480]", "children":[ { "name":"RHO11_03605 gshA; (GenBank) glutamate--cysteine ligase\tK01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]" }, { "name":"RHO11_00775 gshB; (GenBank) glutathione synthase\tK01920 gshB; glutathione synthase [EC:6.3.2.3]" }, { "name":"RHO11_02145 leucyl aminopeptidase\tK01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]" }, { "name":"RHO11_09080 pepB; (GenBank) aminopeptidase PepB\tK07751 pepB; PepB aminopeptidase [EC:3.4.11.23]" }, { "name":"RHO11_07635 pepN; (GenBank) aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"RHO11_00990 aminoacyl-histidine dipeptidase\tK01270 pepD; dipeptidase D [EC:3.4.13.-]" }, { "name":"RHO11_01135 glutathione S-transferase family protein\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"RHO11_01395 glutathione S-transferase family protein\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"RHO11_12305 gstA; (GenBank) glutathione transferase GstA\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"RHO11_06710 gorA; (GenBank) glutathione-disulfide reductase\tK00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]" }, { "name":"RHO11_00565 icd; (GenBank) NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"RHO11_03560 gndA; (GenBank) NADP-dependent phosphogluconate dehydrogenase\tK00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]" }, { "name":"RHO11_06115 zwf; (GenBank) glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"RHO11_08135 gss; (GenBank) bifunctional glutathionylspermidine amidase\/synthase\tK01460 gsp; glutathionylspermidine amidase\/synthetase [EC:3.5.1.78 6.3.1.8]" } ] } ] }, { "name":"09107 Glycan biosynthesis and metabolism", "children":[ { "name":"00520 Amino sugar and nucleotide sugar metabolism [PATH:omo00520]", "children":[ { "name":"RHO11_08955 anhydro-N-acetylmuramic acid kinase\tK09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]" }, { "name":"RHO11_00540 PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09570 crr; (GenBank) PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_12980 murP; (GenBank) PTS N-acetylmuramic acid transporter subunit IIBC\tK11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]" }, { "name":"RHO11_12975 murQ; (GenBank) N-acetylmuramic acid 6-phosphate etherase\tK07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]" }, { "name":"RHO11_04320 nagK; (GenBank) N-acetylglucosamine kinase\tK28207 nagK; N-acetylglucosamine kinase [EC:2.7.1.59]" }, { "name":"RHO11_09405 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase\/glucosamine-1-phosphate N-acetyltransferase GlmU\tK04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase \/ glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]" }, { "name":"RHO11_07585 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"RHO11_05815 murB; (GenBank) UDP-N-acetylmuramate dehydrogenase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"RHO11_03090 nagZ; (GenBank) beta-N-acetylhexosaminidase\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"RHO11_12945 glycoside hydrolase family 3 protein\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"RHO11_09180 nagA; (GenBank) N-acetylglucosamine-6-phosphate deacetylase\tK01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]" }, { "name":"RHO11_11605 glmM; (GenBank) phosphoglucosamine mutase\tK03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]" }, { "name":"RHO11_09185 nagB; (GenBank) glucosamine-6-phosphate deaminase\tK02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]" }, { "name":"RHO11_09410 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"RHO11_02670 aminoimidazole riboside kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"RHO11_04640 ROK family protein\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"RHO11_09575 pgi; (GenBank) glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"RHO11_05530 manA; (GenBank) mannose-6-phosphate isomerase, class I\tK01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]" }, { "name":"RHO11_09620 malX; (GenBank) maltose\/glucose-specific PTS transporter subunit IIBC\tK02791 malX; maltose\/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]" }, { "name":"RHO11_02975 glucokinase\tK00845 glk; glucokinase [EC:2.7.1.2]" }, { "name":"RHO11_06345 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"RHO11_13000 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"RHO11_02770 galK; (GenBank) galactokinase\tK00849 galK; galactokinase [EC:2.7.1.6]" }, { "name":"RHO11_02765 galT; (GenBank) galactose-1-phosphate uridylyltransferase\tK00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]" }, { "name":"RHO11_02760 galE; (GenBank) UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"RHO11_12800 galE; (GenBank) UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"RHO11_10015 PTS sugar transporter subunit IIA\tK02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]" }, { "name":"RHO11_05510 mannose\/fructose\/sorbose PTS transporter subunit IIB\tK02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]" }, { "name":"RHO11_05515 PTS mannose\/fructose\/sorbose transporter subunit IIC\tK02795 manY; mannose PTS system EIIC component" }, { "name":"RHO11_05520 PTS system mannose\/fructose\/sorbose family transporter subunit IID\tK02796 manZ; mannose PTS system EIID component" }, { "name":"RHO11_07550 cpsG; (GenBank) phosphomannomutase CpsG\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"RHO11_07555 mannose-1-phosphate guanylyltransferase\/mannose-6-phosphate isomerase\tK00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" }, { "name":"RHO11_07540 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" } ] }, { "name":"00541 Biosynthesis of various nucleotide sugars [PATH:omo00541]", "children":[ { "name":"RHO11_09405 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase\/glucosamine-1-phosphate N-acetyltransferase GlmU\tK04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase \/ glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]" }, { "name":"RHO11_08630 KpsF\/GutQ family sugar-phosphate isomerase\tK06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]" }, { "name":"RHO11_02050 kdsA; (GenBank) 3-deoxy-8-phosphooctulonate synthase\tK01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]" }, { "name":"RHO11_05345 kdsB; (GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase\tK00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]" }, { "name":"RHO11_07670 lpcA; (GenBank) D-sedoheptulose 7-phosphate isomerase\tK03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]" }, { "name":"RHO11_08270 gmhB; (GenBank) D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase\tK03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]" }, { "name":"RHO11_13070 hldE; (GenBank) bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase\/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE\tK03272 gmhC; D-beta-D-heptose 7-phosphate kinase \/ D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]" }, { "name":"RHO11_13805 rfaD; (GenBank) ADP-glyceromanno-heptose 6-epimerase\tK03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]" }, { "name":"RHO11_13000 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"RHO11_07540 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"RHO11_07545 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"RHO11_07535 rfbC; (GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase\tK01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]" }, { "name":"RHO11_07530 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase\tK00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]" }, { "name":"RHO11_03065 rffA; (GenBank) dTDP-4-amino-4,6-dideoxygalactose transaminase\tK02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]" }, { "name":"RHO11_07555 mannose-1-phosphate guanylyltransferase\/mannose-6-phosphate isomerase\tK00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" } ] }, { "name":"00510 N-Glycan biosynthesis" }, { "name":"00513 Various types of N-glycan biosynthesis" }, { "name":"00512 Mucin type O-glycan biosynthesis" }, { "name":"00515 Mannose type O-glycan biosynthesis" }, { "name":"00514 Other types of O-glycan biosynthesis" }, { "name":"00532 Glycosaminoglycan biosynthesis - chondroitin sulfate \/ dermatan sulfate" }, { "name":"00534 Glycosaminoglycan biosynthesis - heparan sulfate \/ heparin" }, { "name":"00533 Glycosaminoglycan biosynthesis - keratan sulfate" }, { "name":"00531 Glycosaminoglycan degradation" }, { "name":"00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis" }, { "name":"00601 Glycosphingolipid biosynthesis - lacto and neolacto series" }, { "name":"00603 Glycosphingolipid biosynthesis - globo and isoglobo series" }, { "name":"00604 Glycosphingolipid biosynthesis - ganglio series" }, { "name":"00511 Other glycan degradation [PATH:omo00511]", "children":[ { "name":"RHO11_08895 beta-galactosidase\tK01190 lacZ; beta-galactosidase [EC:3.2.1.23]" } ] }, { "name":"00540 Lipopolysaccharide biosynthesis [PATH:omo00540]", "children":[ { "name":"RHO11_09680 lpxA; (GenBank) acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase\tK00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]" }, { "name":"RHO11_05835 lpxC; (GenBank) UDP-3-O-acyl-N-acetylglucosamine deacetylase\tK02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]" }, { "name":"RHO11_07870 lpxD; (GenBank) UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase\tK02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]" }, { "name":"RHO11_04120 UDP-2,3-diacylglucosamine diphosphatase\tK03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]" }, { "name":"RHO11_09685 lpxB; (GenBank) lipid-A-disaccharide synthase\tK00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]" }, { "name":"RHO11_05355 lpxK; (GenBank) tetraacyldisaccharide 4'-kinase\tK00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]" }, { "name":"RHO11_06990 waaA; (GenBank) lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase\tK02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]" }, { "name":"RHO11_07180 Kdo(2)-lipid IV(A) acyltransferase\tK02517 lpxL; Kdo2-lipid IVA lauroyltransferase\/acyltransferase [EC:2.3.1.241 2.3.1.-]" }, { "name":"RHO11_12100 phosphatase PAP2 family protein\tK19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]" }, { "name":"RHO11_08780 eptA; (GenBank) phosphoethanolamine transferase EptA\tK03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]" }, { "name":"RHO11_12535 pagP; (GenBank) lipid IV(A) palmitoyltransferase PagP\tK12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]" }, { "name":"RHO11_13815 rfaC; (GenBank) lipopolysaccharide heptosyltransferase RfaC\tK02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]" }, { "name":"RHO11_13810 rfaF; (GenBank) ADP-heptose--LPS heptosyltransferase RfaF\tK02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]" }, { "name":"RHO11_03070 glycosyltransferase\tK03275 waaO; UDP-glucose:(glucosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]" } ] }, { "name":"00542 O-Antigen repeat unit biosynthesis" }, { "name":"00550 Peptidoglycan biosynthesis [PATH:omo00550]", "children":[ { "name":"RHO11_07585 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"RHO11_05815 murB; (GenBank) UDP-N-acetylmuramate dehydrogenase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"RHO11_05860 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase\tK01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]" }, { "name":"RHO11_05875 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"RHO11_05890 murE; (GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"RHO11_05855 D-alanine--D-alanine ligase\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"RHO11_05885 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" }, { "name":"RHO11_07895 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" }, { "name":"RHO11_08775 phosphatase PAP2 family protein\tK19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"RHO11_05880 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"RHO11_05865 murG; (GenBank) undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"RHO11_09020 mtgA; (GenBank) monofunctional biosynthetic peptidoglycan transglycosylase\tK03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"RHO11_07420 transglycosylase domain-containing protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"RHO11_11745 mrcB; (GenBank) bifunctional glycosyl transferase\/transpeptidase\tK05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]" }, { "name":"RHO11_01400 pbpC; (GenBank) penicillin-binding protein 1C\tK05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]" }, { "name":"RHO11_06630 pbpC; (GenBank) peptidoglycan glycosyltransferase PbpC\tK05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]" }, { "name":"RHO11_09510 mrdB; (GenBank) peptidoglycan glycosyltransferase MrdB\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"RHO11_09505 mrdA; (GenBank) penicillin-binding protein 2\tK05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]" }, { "name":"RHO11_05895 ftsI; (GenBank) peptidoglycan glycosyltransferase FtsI\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"RHO11_09515 serine hydrolase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"RHO11_09935 dacB; (GenBank) serine-type D-Ala-D-Ala carboxypeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" } ] }, { "name":"00552 Teichoic acid biosynthesis [PATH:omo00552]", "children":[ { "name":"RHO11_08775 phosphatase PAP2 family protein\tK19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]" } ] }, { "name":"00571 Lipoarabinomannan (LAM) biosynthesis" }, { "name":"00572 Arabinogalactan biosynthesis - Mycobacterium" }, { "name":"00543 Exopolysaccharide biosynthesis [PATH:omo00543]", "children":[ { "name":"RHO11_07525 undecaprenyl-phosphate glucose phosphotransferase\tK03606 wcaJ; undecaprenyl-phosphate glucose phosphotransferase [EC:2.7.8.31]" }, { "name":"RHO11_08345 cysE; (GenBank) serine O-acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" } ] } ] }, { "name":"09108 Metabolism of cofactors and vitamins", "children":[ { "name":"00730 Thiamine metabolism [PATH:omo00730]", "children":[ { "name":"RHO11_07980 thiD; (GenBank) bifunctional hydroxymethylpyrimidine kinase\/phosphomethylpyrimidine kinase\tK00941 thiD; hydroxymethylpyrimidine\/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]" }, { "name":"RHO11_11835 IscS subfamily cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"RHO11_07515 thiI; (GenBank) tRNA uracil 4-sulfurtransferase ThiI\tK03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]" }, { "name":"RHO11_06090 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase\tK01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]" }, { "name":"RHO11_07990 thiM; (GenBank) hydroxyethylthiazole kinase\tK00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]" }, { "name":"RHO11_07985 thiE; (GenBank) thiamine phosphate synthase\tK00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]" }, { "name":"RHO11_07730 rsgA; (GenBank) small ribosomal subunit biogenesis GTPase RsgA\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"RHO11_07050 alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_13845 phoA; (GenBank) alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_03970 thiamine diphosphokinase\tK00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]" }, { "name":"RHO11_08770 adk; (GenBank) adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" } ] }, { "name":"00740 Riboflavin metabolism [PATH:omo00740]", "children":[ { "name":"RHO11_03125 ribA; (GenBank) GTP cyclohydrolase II\tK01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]" }, { "name":"RHO11_11275 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase\/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"RHO11_02840 yigB; (GenBank) 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB\tK20862 yigB; FMN hydrolase \/ 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]" }, { "name":"RHO11_00755 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase\tK02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]" }, { "name":"RHO11_13025 ribE; (GenBank) 6,7-dimethyl-8-ribityllumazine synthase\tK00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]" }, { "name":"RHO11_02260 riboflavin synthase subunit alpha\tK00793 ribE; riboflavin synthase [EC:2.5.1.9]" }, { "name":"RHO11_13085 ribF; (GenBank) bifunctional riboflavin kinase\/FAD synthetase\tK11753 ribF; riboflavin kinase \/ FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]" }, { "name":"RHO11_10205 phosphatase PAP2 family protein\tK09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]" }, { "name":"RHO11_07990 thiM; (GenBank) hydroxyethylthiazole kinase\tK00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]" }, { "name":"RHO11_12830 nudF; (GenBank) ADP-ribose diphosphatase\tK01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]" }, { "name":"RHO11_07800 UbiX family flavin prenyltransferase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" } ] }, { "name":"00750 Vitamin B6 metabolism [PATH:omo00750]", "children":[ { "name":"RHO11_08730 pdxY; (GenBank) pyridoxal kinase PdxY\tK00868 pdxK; pyridoxine kinase [EC:2.7.1.35]" }, { "name":"RHO11_10225 pdxY; (GenBank) pyridoxal kinase PdxY\tK00868 pdxK; pyridoxine kinase [EC:2.7.1.35]" }, { "name":"RHO11_00715 pyridoxal phosphatase\tK28853 ybhA; pyridoxal phosphatase [EC:3.1.3.74]" }, { "name":"RHO11_12035 Cof-type HAD-IIB family hydrolase\tK28854 yigL; sugar-phosphatase \/ pyridoxal phosphatase [EC:3.1.3.23 3.1.3.74]" }, { "name":"RHO11_04200 serC; (GenBank) 3-phosphoserine\/phosphohydroxythreonine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"RHO11_11125 thrC; (GenBank) threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"RHO11_06295 pdxS; (GenBank) pyridoxal 5'-phosphate synthase lyase subunit PdxS\tK06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]" }, { "name":"RHO11_06300 pdxT; (GenBank) pyridoxal 5'-phosphate synthase glutaminase subunit PdxT\tK08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]" } ] }, { "name":"00760 Nicotinate and nicotinamide metabolism [PATH:omo00760]", "children":[ { "name":"RHO11_07640 pncB; (GenBank) nicotinate phosphoribosyltransferase\tK00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]" }, { "name":"RHO11_05935 purine-nucleoside phosphorylase\tK03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"RHO11_12125 deoD; (GenBank) purine-nucleoside phosphorylase\tK03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"RHO11_13040 nadR; (GenBank) multifunctional transcriptional regulator\/nicotinamide-nucleotide adenylyltransferase\/ribosylnicotinamide kinase NadR\tK06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]" }, { "name":"RHO11_13620 nadR; (GenBank) multifunctional transcriptional regulator\/nicotinamide-nucleotide adenylyltransferase\/ribosylnicotinamide kinase NadR\tK06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]" }, { "name":"RHO11_03140 surE; (GenBank) 5'\/3'-nucleotidase SurE\tK03787 surE; 5'\/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]" }, { "name":"RHO11_06585 nadD; (GenBank) nicotinate-nucleotide adenylyltransferase\tK00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]" }, { "name":"RHO11_05070 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase\tK04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]" }, { "name":"RHO11_12235 nudC; (GenBank) NAD(+) diphosphatase\tK03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]" }, { "name":"RHO11_13530 NAD+ synthase\tK01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]" }, { "name":"RHO11_09025 cobB; (GenBank) NAD-dependent protein deacylase\tK12410 cobB; NAD-dependent protein deacetylase\/lipoamidase [EC:2.3.1.286 2.3.1.313]" }, { "name":"RHO11_08800 nadK; (GenBank) NAD(+) kinase\tK00858 ppnK; NAD+ kinase [EC:2.7.1.23]" }, { "name":"RHO11_03995 pntA; (GenBank) Re\/Si-specific NAD(P)(+) transhydrogenase subunit alpha\tK00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]" }, { "name":"RHO11_04000 pntB; (GenBank) Re\/Si-specific NAD(P)(+) transhydrogenase subunit beta\tK00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]" } ] }, { "name":"00770 Pantothenate and CoA biosynthesis [PATH:omo00770]", "children":[ { "name":"RHO11_05025 ilvI; (GenBank) acetolactate synthase 3 large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_06175 ilvB; (GenBank) acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_11890 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"RHO11_05020 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_06180 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"RHO11_11895 ilvM; (GenBank) acetolactate synthase 2 small subunit\tK11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]" }, { "name":"RHO11_05140 ilvC; (GenBank) ketol-acid reductoisomerase\tK00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]" }, { "name":"RHO11_11905 ilvD; (GenBank) dihydroxy-acid dehydratase\tK01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]" }, { "name":"RHO11_10215 ketopantoate reductase family protein\tK00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]" }, { "name":"RHO11_11945 coaA; (GenBank) type I pantothenate kinase\tK00867 coaA; type I pantothenate kinase [EC:2.7.1.33]" }, { "name":"RHO11_08365 coaBC; (GenBank) bifunctional phosphopantothenoylcysteine decarboxylase\/phosphopantothenate--cysteine ligase CoaBC\tK13038 coaBC; phosphopantothenoylcysteine decarboxylase \/ phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]" }, { "name":"RHO11_05070 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase\tK04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]" }, { "name":"RHO11_08510 coaD; (GenBank) pantetheine-phosphate adenylyltransferase\tK00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]" }, { "name":"RHO11_06680 coaE; (GenBank) dephospho-CoA kinase\tK00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]" }, { "name":"RHO11_00850 ACP phosphodiesterase\tK08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]" }, { "name":"RHO11_11900 branched-chain amino acid transaminase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" } ] }, { "name":"00780 Biotin metabolism [PATH:omo00780]", "children":[ { "name":"RHO11_04260 fabB; (GenBank) beta-ketoacyl-ACP synthase I\tK00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]" }, { "name":"RHO11_10480 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]" }, { "name":"RHO11_06800 fabF; (GenBank) beta-ketoacyl-ACP synthase II\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"RHO11_10465 beta-ketoacyl-ACP synthase\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"RHO11_06810 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"RHO11_10470 3-ketoacyl-ACP reductase FabG2\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"RHO11_09675 fabZ; (GenBank) 3-hydroxyacyl-ACP dehydratase FabZ\tK02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]" }, { "name":"RHO11_05805 birA; (GenBank) bifunctional biotin--[acetyl-CoA-carboxylase] ligase\/biotin operon repressor BirA\tK03524 birA; BirA family transcriptional regulator, biotin operon repressor \/ biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]" } ] }, { "name":"00785 Lipoic acid metabolism [PATH:omo00785]", "children":[ { "name":"RHO11_00515 lipB; (GenBank) lipoyl(octanoyl) transferase LipB\tK03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]" }, { "name":"RHO11_00510 lipA; (GenBank) lipoyl synthase\tK03644 lipA; lipoyl synthase [EC:2.8.1.8]" }, { "name":"RHO11_02360 lipoate--protein ligase\tK03800 lplA; lipoate---protein ligase [EC:6.3.1.20]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_00520 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" } ] }, { "name":"00790 Folate biosynthesis [PATH:omo00790]", "children":[ { "name":"RHO11_13080 folE; (GenBank) GTP cyclohydrolase I FolE\tK01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]" }, { "name":"RHO11_07050 alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_13845 phoA; (GenBank) alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_02915 nudB; (GenBank) dihydroneopterin triphosphate diphosphatase\tK08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]" }, { "name":"RHO11_00785 folB; (GenBank) dihydroneopterin aldolase\tK01633 folB; 7,8-dihydroneopterin aldolase\/epimerase\/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]" }, { "name":"RHO11_11155 folK; (GenBank) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase\tK00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]" }, { "name":"RHO11_11595 folP; (GenBank) dihydropteroate synthase\tK00796 folP; dihydropteroate synthase [EC:2.5.1.15]" }, { "name":"RHO11_08495 folA; (GenBank) type 3 dihydrofolate reductase\tK00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]" }, { "name":"RHO11_07820 folC; (GenBank) bifunctional tetrahydrofolate synthase\/dihydrofolate synthase\tK11754 folC; dihydrofolate synthase \/ folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]" }, { "name":"RHO11_03125 ribA; (GenBank) GTP cyclohydrolase II\tK01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]" }, { "name":"RHO11_05465 queC; (GenBank) 7-cyano-7-deazaguanine synthase QueC\tK06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]" }, { "name":"RHO11_05470 queF; (GenBank) preQ(1) synthase\tK09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]" }, { "name":"RHO11_06165 MBL fold metallo-hydrolase\tK06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]" }, { "name":"RHO11_11170 moaA; (GenBank) GTP 3',8-cyclase MoaA\tK03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]" }, { "name":"RHO11_06380 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC\tK03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]" }, { "name":"RHO11_06370 moaE; (GenBank) molybdopterin synthase catalytic subunit MoaE\tK03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]" }, { "name":"RHO11_12245 mog; (GenBank) molybdopterin adenylyltransferase\tK03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]" }, { "name":"RHO11_00835 moeA; (GenBank) molybdopterin molybdotransferase MoeA\tK03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]" }, { "name":"RHO11_09010 mobA; (GenBank) molybdenum cofactor guanylyltransferase MobA\tK03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]" } ] }, { "name":"00670 One carbon pool by folate [PATH:omo00670]", "children":[ { "name":"RHO11_08495 folA; (GenBank) type 3 dihydrofolate reductase\tK00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]" }, { "name":"RHO11_09585 formate--tetrahydrofolate ligase\tK01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]" }, { "name":"RHO11_04130 folD; (GenBank) bifunctional methylenetetrahydrofolate dehydrogenase\/methenyltetrahydrofolate cyclohydrolase FolD\tK01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) \/ methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]" }, { "name":"RHO11_00120 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"RHO11_06615 purN; (GenBank) phosphoribosylglycinamide formyltransferase\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"RHO11_08080 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"RHO11_06865 thyA; (GenBank) thymidylate synthase\tK00560 thyA; thymidylate synthase [EC:2.1.1.45]" }, { "name":"RHO11_09120 metF; (GenBank) methylenetetrahydrofolate reductase [NAD(P)H]\tK00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]" }, { "name":"RHO11_06105 5-formyltetrahydrofolate cyclo-ligase\tK01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]" }, { "name":"RHO11_03860 mmuM; (GenBank) homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" }, { "name":"RHO11_12400 metK; (GenBank) methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" } ] }, { "name":"00830 Retinol metabolism" }, { "name":"00860 Porphyrin metabolism [PATH:omo00860]", "children":[ { "name":"RHO11_08610 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"RHO11_02035 hemA; (GenBank) glutamyl-tRNA reductase\tK02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]" }, { "name":"RHO11_03355 hemL; (GenBank) glutamate-1-semialdehyde 2,1-aminomutase\tK01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]" }, { "name":"RHO11_12370 hemB; (GenBank) porphobilinogen synthase\tK01698 hemB; porphobilinogen synthase [EC:4.2.1.24]" }, { "name":"RHO11_00455 hemC; (GenBank) hydroxymethylbilane synthase\tK01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]" }, { "name":"RHO11_00450 uroporphyrinogen-III synthase\tK01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]" }, { "name":"RHO11_09400 hemE; (GenBank) uroporphyrinogen decarboxylase\tK01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]" }, { "name":"RHO11_11935 hemN; (GenBank) oxygen-independent coproporphyrinogen III oxidase\tK02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]" }, { "name":"RHO11_06935 hemG; (GenBank) menaquinone-dependent protoporphyrinogen IX dehydrogenase\tK00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]" }, { "name":"RHO11_06995 hemH; (GenBank) ferrochelatase\tK01772 hemH; protoporphyrin\/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]" }, { "name":"RHO11_00445 uroporphyrinogen-III C-methyltransferase\tK02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]" }, { "name":"RHO11_08670 cysG; (GenBank) siroheme synthase CysG\tK02302 cysG; uroporphyrin-III C-methyltransferase \/ precorrin-2 dehydrogenase \/ sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]" } ] }, { "name":"00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:omo00130]", "children":[ { "name":"RHO11_10855 ubiA; (GenBank) 4-hydroxybenzoate octaprenyltransferase\tK03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]" }, { "name":"RHO11_07950 ubiD; (GenBank) 4-hydroxy-3-polyprenylbenzoate decarboxylase\tK03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]" }, { "name":"RHO11_07800 UbiX family flavin prenyltransferase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" }, { "name":"RHO11_10975 FAD-dependent monooxygenase\tK18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]" }, { "name":"RHO11_11765 peptidase U32 family protein\tK24844 ubiU; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]" }, { "name":"RHO11_11760 U32 family peptidase\tK24845 ubiV; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]" }, { "name":"RHO11_04630 SCP2 domain-containing protein\tK24843 ubiT; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) accessory factor UbiT" }, { "name":"RHO11_04600 ubiG; (GenBank) bifunctional 2-polyprenyl-6-hydroxyphenol methylase\/3-demethylubiquinol 3-O-methyltransferase UbiG\tK00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase \/ 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]" }, { "name":"RHO11_13045 ubiE; (GenBank) bifunctional demethylmenaquinone methyltransferase\/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE\tK03183 ubiE; demethylmenaquinone methyltransferase \/ 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]" }, { "name":"RHO11_02490 1,4-dihydroxy-2-naphthoate polyprenyltransferase\tK02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]" } ] } ] }, { "name":"09109 Metabolism of terpenoids and polyketides", "children":[ { "name":"00900 Terpenoid backbone biosynthesis [PATH:omo00900]", "children":[ { "name":"RHO11_06090 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase\tK01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]" }, { "name":"RHO11_11620 ispC; (GenBank) 1-deoxy-D-xylulose-5-phosphate reductoisomerase\tK00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]" }, { "name":"RHO11_04340 ispD; (GenBank) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase\tK00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]" }, { "name":"RHO11_02025 ispE; (GenBank) 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase\tK00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]" }, { "name":"RHO11_04335 ispF; (GenBank) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase\tK01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]" }, { "name":"RHO11_08740 ispG; (GenBank) flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase\tK03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]" }, { "name":"RHO11_13100 ispH; (GenBank) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase\tK03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]" }, { "name":"RHO11_07800 UbiX family flavin prenyltransferase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" }, { "name":"RHO11_06085 ispA; (GenBank) (2E,6E)-farnesyl diphosphate synthase\tK00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]" }, { "name":"RHO11_12440 ispB; (GenBank) octaprenyl diphosphate synthase\tK02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]" }, { "name":"RHO11_07895 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" } ] }, { "name":"00902 Monoterpenoid biosynthesis" }, { "name":"00909 Sesquiterpenoid and triterpenoid biosynthesis" }, { "name":"00904 Diterpenoid biosynthesis" }, { "name":"00906 Carotenoid biosynthesis" }, { "name":"00905 Brassinosteroid biosynthesis" }, { "name":"00981 Insect hormone biosynthesis" }, { "name":"00908 Zeatin biosynthesis" }, { "name":"00903 Limonene degradation" }, { "name":"00907 Pinene, camphor and geraniol degradation" }, { "name":"01052 Type I polyketide structures" }, { "name":"00522 Biosynthesis of 12-, 14- and 16-membered macrolides" }, { "name":"01051 Biosynthesis of ansamycins", "children":[ { "name":"RHO11_00170 tkt; (GenBank) transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_11820 transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"RHO11_11825 transketolase family protein\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" } ] }, { "name":"01059 Biosynthesis of enediyne antibiotics" }, { "name":"01056 Biosynthesis of type II polyketide backbone" }, { "name":"01057 Biosynthesis of type II polyketide products" }, { "name":"00253 Tetracycline biosynthesis" }, { "name":"00523 Polyketide sugar unit biosynthesis [PATH:omo00523]", "children":[ { "name":"RHO11_07540 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"RHO11_07545 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"RHO11_07535 rfbC; (GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase\tK01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]" }, { "name":"RHO11_07530 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase\tK00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]" } ] }, { "name":"01054 Nonribosomal peptide structures" }, { "name":"01053 Biosynthesis of siderophore group nonribosomal peptides" }, { "name":"01055 Biosynthesis of vancomycin group antibiotics", "children":[ { "name":"RHO11_07545 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" } ] } ] }, { "name":"09110 Biosynthesis of other secondary metabolites", "children":[ { "name":"00940 Phenylpropanoid biosynthesis" }, { "name":"00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis" }, { "name":"00941 Flavonoid biosynthesis" }, { "name":"00944 Flavone and flavonol biosynthesis" }, { "name":"00942 Anthocyanin biosynthesis" }, { "name":"00943 Isoflavonoid biosynthesis" }, { "name":"00946 Degradation of flavonoids" }, { "name":"00901 Indole alkaloid biosynthesis" }, { "name":"00403 Indole diterpene alkaloid biosynthesis" }, { "name":"00950 Isoquinoline alkaloid biosynthesis" }, { "name":"00960 Tropane, piperidine and pyridine alkaloid biosynthesis" }, { "name":"00996 Biosynthesis of various alkaloids" }, { "name":"00232 Caffeine metabolism" }, { "name":"00965 Betalain biosynthesis" }, { "name":"00966 Glucosinolate biosynthesis" }, { "name":"00402 Benzoxazinoid biosynthesis" }, { "name":"00311 Penicillin and cephalosporin biosynthesis" }, { "name":"00332 Carbapenem biosynthesis [PATH:omo00332]", "children":[ { "name":"RHO11_01005 proB; (GenBank) glutamate 5-kinase\tK00931 proB; glutamate 5-kinase [EC:2.7.2.11]" }, { "name":"RHO11_01015 proA; (GenBank) glutamate-5-semialdehyde dehydrogenase\tK00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]" } ] }, { "name":"00261 Monobactam biosynthesis [PATH:omo00261]", "children":[ { "name":"RHO11_00320 sat; (GenBank) sulfate adenylyltransferase\tK00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]" }, { "name":"RHO11_05705 lysC; (GenBank) lysine-sensitive aspartokinase 3\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"RHO11_11135 thrA; (GenBank) bifunctional aspartate kinase\/homoserine dehydrogenase I\tK12524 thrA; bifunctional aspartokinase \/ homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]" }, { "name":"RHO11_09170 asd; (GenBank) aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"RHO11_00610 dihydrodipicolinate synthase family protein\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"RHO11_04030 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"RHO11_13575 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase\tK00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]" } ] }, { "name":"00331 Clavulanic acid biosynthesis" }, { "name":"00521 Streptomycin biosynthesis [PATH:omo00521]", "children":[ { "name":"RHO11_02975 glucokinase\tK00845 glk; glucokinase [EC:2.7.1.2]" }, { "name":"RHO11_06345 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"RHO11_13010 suhB; (GenBank) inositol-1-monophosphatase\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"RHO11_07540 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"RHO11_07545 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" }, { "name":"RHO11_07535 rfbC; (GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase\tK01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]" }, { "name":"RHO11_07530 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase\tK00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]" } ] }, { "name":"00524 Neomycin, kanamycin and gentamicin biosynthesis", "children":[ { "name":"RHO11_02975 glucokinase\tK00845 glk; glucokinase [EC:2.7.1.2]" } ] }, { "name":"00525 Acarbose and validamycin biosynthesis [PATH:omo00525]", "children":[ { "name":"RHO11_07540 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA\tK00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]" }, { "name":"RHO11_07545 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase\tK01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]" } ] }, { "name":"00401 Novobiocin biosynthesis [PATH:omo00401]", "children":[ { "name":"RHO11_11795 tyrA; (GenBank) bifunctional chorismate mutase\/prephenate dehydrogenase\tK14187 tyrA; chorismate mutase \/ prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]" }, { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_03665 hisC; (GenBank) histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"RHO11_12985 amino acid aminotransferase\tK00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]" } ] }, { "name":"00404 Staurosporine biosynthesis" }, { "name":"00405 Phenazine biosynthesis", "children":[ { "name":"RHO11_08535 anthranilate synthase component 1\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" } ] }, { "name":"00333 Prodigiosin biosynthesis", "children":[ { "name":"RHO11_06815 fabD; (GenBank) ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"RHO11_06810 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"RHO11_10470 3-ketoacyl-ACP reductase FabG2\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" } ] }, { "name":"00254 Aflatoxin biosynthesis" }, { "name":"00975 Biosynthesis of various siderophores [PATH:omo00975]", "children":[ { "name":"RHO11_05165 diaminobutyrate--2-oxoglutarate transaminase family protein\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"RHO11_05160 aspartate aminotransferase family protein\tK13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]" } ] }, { "name":"00998 Biosynthesis of various antibiotics", "children":[ { "name":"RHO11_06805 acpP; (GenBank) acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_10525 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"RHO11_10530 phosphopantetheine-binding protein\tK02078 acpP; acyl carrier protein" } ] }, { "name":"00999 Biosynthesis of various plant secondary metabolites [PATH:omo00999]", "children":[ { "name":"RHO11_12400 metK; (GenBank) methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"RHO11_09220 shikimate 5-dehydrogenase\tK00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]" } ] }, { "name":"00997 Biosynthesis of various other secondary metabolites" } ] }, { "name":"09111 Xenobiotics biodegradation and metabolism", "children":[ { "name":"00362 Benzoate degradation [PATH:omo00362]", "children":[ { "name":"RHO11_00400 2-hydroxymuconate tautomerase\tK01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]" }, { "name":"RHO11_11860 fdx; (GenBank) ISC system 2Fe-2S type ferredoxin\tK04755 fdx; ferredoxin, 2Fe-2S" } ] }, { "name":"00627 Aminobenzoate degradation [PATH:omo00627]", "children":[ { "name":"RHO11_10940 yccX; (GenBank) acylphosphatase\tK01512 acyP; acylphosphatase [EC:3.6.1.7]" }, { "name":"RHO11_07800 UbiX family flavin prenyltransferase\tK03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]" } ] }, { "name":"00364 Fluorobenzoate degradation" }, { "name":"00625 Chloroalkane and chloroalkene degradation [PATH:omo00625]", "children":[ { "name":"RHO11_07005 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"RHO11_11065 adhE; (GenBank) bifunctional acetaldehyde-CoA\/alcohol dehydrogenase\tK04072 adhE; acetaldehyde dehydrogenase \/ alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]" } ] }, { "name":"00361 Chlorocyclohexane and chlorobenzene degradation" }, { "name":"00623 Toluene degradation" }, { "name":"00622 Xylene degradation", "children":[ { "name":"RHO11_00400 2-hydroxymuconate tautomerase\tK01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]" } ] }, { "name":"00633 Nitrotoluene degradation [PATH:omo00633]", "children":[ { "name":"RHO11_00015 nfsA; (GenBank) oxygen-insensitive NADPH nitroreductase\tK10678 nfsA; nitroreductase [EC:1.-.-.-]" }, { "name":"RHO11_00055 nfsB; (GenBank) oxygen-insensitive NAD(P)H nitroreductase\tK10679 nfnB; nitroreductase \/ dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]" } ] }, { "name":"00642 Ethylbenzene degradation" }, { "name":"00643 Styrene degradation" }, { "name":"00791 Atrazine degradation" }, { "name":"00930 Caprolactam degradation" }, { "name":"00363 Bisphenol degradation" }, { "name":"00621 Dioxin degradation", "children":[ { "name":"RHO11_00400 2-hydroxymuconate tautomerase\tK01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]" } ] }, { "name":"00626 Naphthalene degradation [PATH:omo00626]", "children":[ { "name":"RHO11_07005 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"RHO11_11065 adhE; (GenBank) bifunctional acetaldehyde-CoA\/alcohol dehydrogenase\tK04072 adhE; acetaldehyde dehydrogenase \/ alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]" } ] }, { "name":"00624 Polycyclic aromatic hydrocarbon degradation" }, { "name":"00365 Furfural degradation" }, { "name":"00984 Steroid degradation" }, { "name":"00980 Metabolism of xenobiotics by cytochrome P450" }, { "name":"00982 Drug metabolism - cytochrome P450" }, { "name":"00983 Drug metabolism - other enzymes" } ] }, { "name":"09112 Not included in regular maps", "children":[ { "name":"09113 Global maps only" } ] } ] }, { "name":"09120 Genetic Information Processing", "children":[ { "name":"09121 Transcription", "children":[ { "name":"03020 RNA polymerase [PATH:omo03020]", "children":[ { "name":"RHO11_07915 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"RHO11_07910 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"RHO11_10165 rpoA; (GenBank) DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"RHO11_12705 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" } ] }, { "name":"03022 Basal transcription factors" }, { "name":"03040 Spliceosome" } ] }, { "name":"09122 Translation", "children":[ { "name":"03010 Ribosome [PATH:omo03010]", "children":[ { "name":"RHO11_06880 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_08250 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_11695 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_12425 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_12430 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_05440 rpsA; (GenBank) 30S ribosomal protein S1\tK02945 RP-S1; small subunit ribosomal protein S1" }, { "name":"RHO11_09275 rpsB; (GenBank) 30S ribosomal protein S2\tK02967 RP-S2; small subunit ribosomal protein S2" }, { "name":"RHO11_10070 rpsC; (GenBank) 30S ribosomal protein S3\tK02982 RP-S3; small subunit ribosomal protein S3" }, { "name":"RHO11_10160 rpsD; (GenBank) 30S ribosomal protein S4\tK02986 RP-S4; small subunit ribosomal protein S4" }, { "name":"RHO11_10125 rpsE; (GenBank) 30S ribosomal protein S5\tK02988 RP-S5; small subunit ribosomal protein S5" }, { "name":"RHO11_13550 rpsF; (GenBank) 30S ribosomal protein S6\tK02990 RP-S6; small subunit ribosomal protein S6" }, { "name":"RHO11_11245 rpsG; (GenBank) 30S ribosomal protein S7\tK02992 RP-S7; small subunit ribosomal protein S7" }, { "name":"RHO11_10110 rpsH; (GenBank) 30S ribosomal protein S8\tK02994 RP-S8; small subunit ribosomal protein S8" }, { "name":"RHO11_11925 rpsI; (GenBank) 30S ribosomal protein S9\tK02996 RP-S9; small subunit ribosomal protein S9" }, { "name":"RHO11_10035 rpsJ; (GenBank) 30S ribosomal protein S10\tK02946 RP-S10; small subunit ribosomal protein S10" }, { "name":"RHO11_10155 rpsK; (GenBank) 30S ribosomal protein S11\tK02948 RP-S11; small subunit ribosomal protein S11" }, { "name":"RHO11_11240 rpsL; (GenBank) 30S ribosomal protein S12\tK02950 RP-S12; small subunit ribosomal protein S12" }, { "name":"RHO11_10150 rpsM; (GenBank) 30S ribosomal protein S13\tK02952 RP-S13; small subunit ribosomal protein S13" }, { "name":"RHO11_10105 rpsN; (GenBank) 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"RHO11_06600 rpsO; (GenBank) 30S ribosomal protein S15\tK02956 RP-S15; small subunit ribosomal protein S15" }, { "name":"RHO11_05700 rpsP; (GenBank) 30S ribosomal protein S16\tK02959 RP-S16; small subunit ribosomal protein S16" }, { "name":"RHO11_10085 rpsQ; (GenBank) 30S ribosomal protein S17\tK02961 RP-S17; small subunit ribosomal protein S17" }, { "name":"RHO11_13560 rpsR; (GenBank) 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"RHO11_10060 rpsS; (GenBank) 30S ribosomal protein S19\tK02965 RP-S19; small subunit ribosomal protein S19" }, { "name":"RHO11_08450 rpsT; (GenBank) 30S ribosomal protein S20\tK02968 RP-S20; small subunit ribosomal protein S20" }, { "name":"RHO11_12365 rpsU; (GenBank) 30S ribosomal protein S21\tK02970 RP-S21; small subunit ribosomal protein S21" }, { "name":"RHO11_07930 rplA; (GenBank) 50S ribosomal protein L1\tK02863 RP-L1; large subunit ribosomal protein L1" }, { "name":"RHO11_10055 rplB; (GenBank) 50S ribosomal protein L2\tK02886 RP-L2; large subunit ribosomal protein L2" }, { "name":"RHO11_10040 rplC; (GenBank) 50S ribosomal protein L3\tK02906 RP-L3; large subunit ribosomal protein L3" }, { "name":"RHO11_10045 rplD; (GenBank) 50S ribosomal protein L4\tK02926 RP-L4; large subunit ribosomal protein L4" }, { "name":"RHO11_10100 rplE; (GenBank) 50S ribosomal protein L5\tK02931 RP-L5; large subunit ribosomal protein L5" }, { "name":"RHO11_10115 rplF; (GenBank) 50S ribosomal protein L6\tK02933 RP-L6; large subunit ribosomal protein L6" }, { "name":"RHO11_13565 rplI; (GenBank) 50S ribosomal protein L9\tK02939 RP-L9; large subunit ribosomal protein L9" }, { "name":"RHO11_07925 rplJ; (GenBank) 50S ribosomal protein L10\tK02864 RP-L10; large subunit ribosomal protein L10" }, { "name":"RHO11_07935 rplK; (GenBank) 50S ribosomal protein L11\tK02867 RP-L11; large subunit ribosomal protein L11" }, { "name":"RHO11_07920 rplL; (GenBank) 50S ribosomal protein L7\/L12\tK02935 RP-L7; large subunit ribosomal protein L7\/L12" }, { "name":"RHO11_11920 rplM; (GenBank) 50S ribosomal protein L13\tK02871 RP-L13; large subunit ribosomal protein L13" }, { "name":"RHO11_10090 rplN; (GenBank) 50S ribosomal protein L14\tK02874 RP-L14; large subunit ribosomal protein L14" }, { "name":"RHO11_10135 rplO; (GenBank) 50S ribosomal protein L15\tK02876 RP-L15; large subunit ribosomal protein L15" }, { "name":"RHO11_10075 rplP; (GenBank) 50S ribosomal protein L16\tK02878 RP-L16; large subunit ribosomal protein L16" }, { "name":"RHO11_10170 rplQ; (GenBank) 50S ribosomal protein L17\tK02879 RP-L17; large subunit ribosomal protein L17" }, { "name":"RHO11_10120 rplR; (GenBank) 50S ribosomal protein L18\tK02881 RP-L18; large subunit ribosomal protein L18" }, { "name":"RHO11_05685 rplS; (GenBank) 50S ribosomal protein L19\tK02884 RP-L19; large subunit ribosomal protein L19" }, { "name":"RHO11_05490 rplT; (GenBank) 50S ribosomal protein L20\tK02887 RP-L20; large subunit ribosomal protein L20" }, { "name":"RHO11_08685 rplU; (GenBank) 50S ribosomal protein L21\tK02888 RP-L21; large subunit ribosomal protein L21" }, { "name":"RHO11_10065 rplV; (GenBank) 50S ribosomal protein L22\tK02890 RP-L22; large subunit ribosomal protein L22" }, { "name":"RHO11_10050 rplW; (GenBank) 50S ribosomal protein L23\tK02892 RP-L23; large subunit ribosomal protein L23" }, { "name":"RHO11_10095 rplX; (GenBank) 50S ribosomal protein L24\tK02895 RP-L24; large subunit ribosomal protein L24" }, { "name":"RHO11_06110 rplY; (GenBank) 50S ribosomal protein L25\tK02897 RP-L25; large subunit ribosomal protein L25" }, { "name":"RHO11_08690 rpmA; (GenBank) 50S ribosomal protein L27\tK02899 RP-L27; large subunit ribosomal protein L27" }, { "name":"RHO11_10865 rpmB; (GenBank) 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"RHO11_10080 rpmC; (GenBank) 50S ribosomal protein L29\tK02904 RP-L29; large subunit ribosomal protein L29" }, { "name":"RHO11_10130 rpmD; (GenBank) 50S ribosomal protein L30\tK02907 RP-L30; large subunit ribosomal protein L30" }, { "name":"RHO11_07755 rpmE; (GenBank) 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"RHO11_06830 rpmF; (GenBank) 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"RHO11_10870 rpmG; (GenBank) 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"RHO11_12215 rpmH; (GenBank) 50S ribosomal protein L34\tK02914 RP-L34; large subunit ribosomal protein L34" }, { "name":"RHO11_05495 rpmI; (GenBank) 50S ribosomal protein L35\tK02916 RP-L35; large subunit ribosomal protein L35" }, { "name":"RHO11_10145 rpmJ; (GenBank) 50S ribosomal protein L36\tK02919 RP-L36; large subunit ribosomal protein L36" } ] }, { "name":"00970 Aminoacyl-tRNA biosynthesis [PATH:omo00970]", "children":[ { "name":"RHO11_06890 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"RHO11_09890 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"RHO11_11685 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"RHO11_01575 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_04610 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_06730 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_06735 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_06740 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_13205 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_00325 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"RHO11_06770 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"RHO11_03575 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"RHO11_11700 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"RHO11_03275 tRNA-Cys\tK14222 tRNA-Cys; tRNA Cys" }, { "name":"RHO11_06405 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"RHO11_06415 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"RHO11_08260 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"RHO11_12415 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"RHO11_03200 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_05175 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_07435 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_11080 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_09545 tRNA-His\tK14226 tRNA-His; tRNA His" }, { "name":"RHO11_06895 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"RHO11_11680 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"RHO11_02130 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_03195 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_05170 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_06400 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_06410 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_07505 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_01180 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"RHO11_04510 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"RHO11_12000 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"RHO11_03250 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_04955 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_06395 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_09115 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_12270 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_10765 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"RHO11_07065 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"RHO11_09540 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"RHO11_04355 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_04385 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_06745 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_07695 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_11070 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"RHO11_11085 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"RHO11_11705 tRNA-Trp\tK14235 tRNA-Trp; tRNA Trp" }, { "name":"RHO11_11075 tRNA-Tyr\tK14236 tRNA-Tyr; tRNA Tyr" }, { "name":"RHO11_01095 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"RHO11_12005 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"RHO11_12010 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"RHO11_08610 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"RHO11_11055 glnS; (GenBank) glutamine--tRNA ligase\tK01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]" }, { "name":"RHO11_06755 alaS; (GenBank) alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"RHO11_02920 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"RHO11_07645 asnS; (GenBank) asparagine--tRNA ligase\tK01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]" }, { "name":"RHO11_13695 glyQ; (GenBank) glycine--tRNA ligase subunit alpha\tK01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]" }, { "name":"RHO11_13690 glyS; (GenBank) glycine--tRNA ligase subunit beta\tK01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]" }, { "name":"RHO11_05505 thrS; (GenBank) threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"RHO11_07305 serS; (GenBank) serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"RHO11_13665 DgaE family pyridoxal phosphate-dependent ammonia lyase\tK01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]" }, { "name":"RHO11_05715 cysS; (GenBank) cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"RHO11_12500 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"RHO11_09970 fmt; (GenBank) methionyl-tRNA formyltransferase\tK00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]" }, { "name":"RHO11_02160 valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"RHO11_06570 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"RHO11_13090 ileS; (GenBank) isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"RHO11_09385 lysS; (GenBank) lysine--tRNA ligase\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"RHO11_01240 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"RHO11_09285 proS; (GenBank) proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"RHO11_08745 hisS; (GenBank) histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"RHO11_05485 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"RHO11_05480 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"RHO11_08725 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"RHO11_08025 trpS; (GenBank) tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" } ] }, { "name":"03013 Nucleocytoplasmic transport" }, { "name":"03015 mRNA surveillance pathway" }, { "name":"03008 Ribosome biogenesis in eukaryotes [PATH:omo03008]", "children":[ { "name":"RHO11_04560 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"RHO11_06985 orn; (GenBank) oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" } ] } ] }, { "name":"09123 Folding, sorting and degradation", "children":[ { "name":"03060 Protein export [PATH:omo03060]", "children":[ { "name":"RHO11_10140 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"RHO11_11095 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"RHO11_07510 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"RHO11_09900 secD; (GenBank) protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"RHO11_09895 secF; (GenBank) protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"RHO11_09905 yajC; (GenBank) preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"RHO11_12230 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"RHO11_06975 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"RHO11_08335 secB; (GenBank) protein-export chaperone SecB\tK03071 secB; preprotein translocase subunit SecB" }, { "name":"RHO11_07085 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"RHO11_09225 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"RHO11_13055 tatA; (GenBank) twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"RHO11_13060 tatB; (GenBank) Sec-independent protein translocase protein TatB\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"RHO11_13065 tatC; (GenBank) twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" }, { "name":"RHO11_04565 lepB; (GenBank) signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"RHO11_13095 lspA; (GenBank) signal peptidase II\tK03101 lspA; signal peptidase II [EC:3.4.23.36]" } ] }, { "name":"04141 Protein processing in endoplasmic reticulum", "children":[ { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" } ] }, { "name":"04130 SNARE interactions in vesicular transport" }, { "name":"04120 Ubiquitin mediated proteolysis" }, { "name":"04122 Sulfur relay system [PATH:omo04122]", "children":[ { "name":"RHO11_11835 IscS subfamily cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"RHO11_12040 tusA; (GenBank) sulfurtransferase TusA\tK04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]" }, { "name":"RHO11_11625 tusB; (GenBank) sulfurtransferase complex subunit TusB\tK07237 tusB; tRNA 2-thiouridine synthesizing protein B" }, { "name":"RHO11_09660 tusC; (GenBank) sulfurtransferase complex subunit TusC\tK07236 tusC; tRNA 2-thiouridine synthesizing protein C" }, { "name":"RHO11_09665 tusD; (GenBank) sulfurtransferase complex subunit TusD\tK07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]" }, { "name":"RHO11_04350 TusE\/DsrC\/DsvC family sulfur relay protein\tK11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]" }, { "name":"RHO11_00470 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA\tK00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]" }, { "name":"RHO11_06370 moaE; (GenBank) molybdopterin synthase catalytic subunit MoaE\tK03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]" }, { "name":"RHO11_11170 moaA; (GenBank) GTP 3',8-cyclase MoaA\tK03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]" }, { "name":"RHO11_06375 moaD; (GenBank) molybdopterin synthase sulfur carrier subunit\tK03636 moaD; sulfur-carrier protein" }, { "name":"RHO11_02960 molybdopterin-synthase adenylyltransferase MoeB\tK21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]" }, { "name":"RHO11_06380 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC\tK03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]" }, { "name":"RHO11_12245 mog; (GenBank) molybdopterin adenylyltransferase\tK03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]" }, { "name":"RHO11_07515 thiI; (GenBank) tRNA uracil 4-sulfurtransferase ThiI\tK03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]" } ] }, { "name":"03050 Proteasome" }, { "name":"03018 RNA degradation [PATH:omo03018]", "children":[ { "name":"RHO11_06875 rppH; (GenBank) RNA pyrophosphohydrolase\tK08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]" }, { "name":"RHO11_11175 rne; (GenBank) ribonuclease E\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"RHO11_00245 rhlB; (GenBank) ATP-dependent RNA helicase RhlB\tK03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]" }, { "name":"RHO11_05105 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"RHO11_00575 pnp; (GenBank) polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"RHO11_00415 DEAD\/DEAH box helicase\tK11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]" }, { "name":"RHO11_07780 rnr; (GenBank) ribonuclease R\tK12573 rnr; ribonuclease R [EC:3.1.13.1]" }, { "name":"RHO11_00585 DEAD\/DEAH family ATP-dependent RNA helicase\tK05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]" }, { "name":"RHO11_02815 recQ; (GenBank) DNA helicase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"RHO11_03565 rho; (GenBank) transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" }, { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"RHO11_08910 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"RHO11_10780 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"RHO11_11650 hfq; (GenBank) RNA chaperone Hfq\tK03666 hfq; host factor-I protein" }, { "name":"RHO11_02205 ppk1; (GenBank) polyphosphate kinase 1\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"RHO11_04205 pcnB; (GenBank) polynucleotide adenylyltransferase PcnB\tK00970 pcnB; poly(A) polymerase [EC:2.7.7.19]" } ] } ] }, { "name":"09124 Replication and repair", "children":[ { "name":"03030 DNA replication [PATH:omo03030]", "children":[ { "name":"RHO11_03580 dnaQ; (GenBank) DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"RHO11_09310 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"RHO11_00695 dnaX; (GenBank) DNA polymerase III subunit gamma\/tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"RHO11_12760 DNA polymerase III subunit delta' C-terminal domain-containing protein\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"RHO11_06580 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"RHO11_03960 DNA polymerase III subunit psi\tK02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]" }, { "name":"RHO11_02150 DNA polymerase III subunit chi\tK02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]" }, { "name":"RHO11_11020 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"RHO11_00350 dnaB; (GenBank) replicative DNA helicase\tK02314 dnaB; replicative DNA helicase [EC:5.6.2.3]" }, { "name":"RHO11_12360 dnaG; (GenBank) DNA primase\tK02316 dnaG; DNA primase [EC:2.7.7.101]" }, { "name":"RHO11_01640 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_04605 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_03585 rnhA; (GenBank) ribonuclease HI\tK03469 rnhA; ribonuclease HI [EC:3.1.26.4]" }, { "name":"RHO11_09690 rnhB; (GenBank) ribonuclease HII\tK03470 rnhB; ribonuclease HII [EC:3.1.26.4]" }, { "name":"RHO11_08995 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"RHO11_00390 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03410 Base excision repair [PATH:omo03410]", "children":[ { "name":"RHO11_08715 nth; (GenBank) endonuclease III\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]" }, { "name":"RHO11_08880 ung; (GenBank) uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"RHO11_07390 mutY; (GenBank) A\/G-specific adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]" }, { "name":"RHO11_07380 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase\/DNA-(apurinic or apyrimidinic site) lyase\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"RHO11_13700 DNA-3-methyladenine glycosylase I\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]" }, { "name":"RHO11_11785 xthA; (GenBank) exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"RHO11_00900 nfo; (GenBank) deoxyribonuclease IV\tK01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]" }, { "name":"RHO11_08995 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"RHO11_09605 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]" }, { "name":"RHO11_00390 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03420 Nucleotide excision repair [PATH:omo03420]", "children":[ { "name":"RHO11_02235 mfd; (GenBank) transcription-repair coupling factor\tK03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"RHO11_12890 uvrA; (GenBank) excinuclease ABC subunit UvrA\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"RHO11_05780 uvrB; (GenBank) excinuclease ABC subunit UvrB\tK03702 uvrB; excinuclease ABC subunit B" }, { "name":"RHO11_03185 uvrC; (GenBank) excinuclease ABC subunit UvrC\tK03703 uvrC; excinuclease ABC subunit C" }, { "name":"RHO11_02835 uvrD; (GenBank) DNA helicase II\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"RHO11_08995 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"RHO11_00390 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03430 Mismatch repair [PATH:omo03430]", "children":[ { "name":"RHO11_03375 mutS; (GenBank) DNA mismatch repair protein MutS\tK03555 mutS; DNA mismatch repair protein MutS" }, { "name":"RHO11_11640 mutL; (GenBank) DNA mismatch repair endonuclease MutL\tK03572 mutL; DNA mismatch repair protein MutL" }, { "name":"RHO11_09420 mutH; (GenBank) DNA mismatch repair endonuclease MutH\tK03573 mutH; DNA mismatch repair protein MutH" }, { "name":"RHO11_02835 uvrD; (GenBank) DNA helicase II\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"RHO11_03745 sbcB; (GenBank) exodeoxyribonuclease I\tK01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]" }, { "name":"RHO11_11780 xseA; (GenBank) exodeoxyribonuclease VII large subunit\tK03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]" }, { "name":"RHO11_06080 xseB; (GenBank) exodeoxyribonuclease VII small subunit\tK03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]" }, { "name":"RHO11_09605 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]" }, { "name":"RHO11_01640 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_04605 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_09310 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"RHO11_11020 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"RHO11_00695 dnaX; (GenBank) DNA polymerase III subunit gamma\/tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"RHO11_06580 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"RHO11_12760 DNA polymerase III subunit delta' C-terminal domain-containing protein\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"RHO11_03580 dnaQ; (GenBank) DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"RHO11_02150 DNA polymerase III subunit chi\tK02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]" }, { "name":"RHO11_03960 DNA polymerase III subunit psi\tK02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]" }, { "name":"RHO11_00390 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"RHO11_08010 Dam family site-specific DNA-(adenine-N6)-methyltransferase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" }, { "name":"RHO11_13195 DNA adenine methylase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" } ] }, { "name":"03440 Homologous recombination [PATH:omo03440]", "children":[ { "name":"RHO11_09605 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]" }, { "name":"RHO11_01640 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_04605 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_11015 recF; (GenBank) DNA replication\/repair protein RecF\tK03629 recF; DNA replication and repair protein RecF" }, { "name":"RHO11_04620 recO; (GenBank) DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)" }, { "name":"RHO11_00710 recR; (GenBank) recombination mediator RecR\tK06187 recR; recombination protein RecR" }, { "name":"RHO11_06765 recA; (GenBank) recombinase RecA\tK03553 recA; recombination protein RecA" }, { "name":"RHO11_08995 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"RHO11_02885 ruvA; (GenBank) Holliday junction branch migration protein RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA" }, { "name":"RHO11_02880 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]" }, { "name":"RHO11_02895 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]" }, { "name":"RHO11_12695 recG; (GenBank) ATP-dependent DNA helicase RecG\tK03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]" }, { "name":"RHO11_06040 recB; (GenBank) exodeoxyribonuclease V subunit beta\tK03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]" }, { "name":"RHO11_06795 recC; (GenBank) exodeoxyribonuclease V subunit gamma\tK03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]" }, { "name":"RHO11_04310 recD; (GenBank) exodeoxyribonuclease V subunit alpha\tK03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]" }, { "name":"RHO11_09310 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"RHO11_11020 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"RHO11_00695 dnaX; (GenBank) DNA polymerase III subunit gamma\/tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"RHO11_06580 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"RHO11_12760 DNA polymerase III subunit delta' C-terminal domain-containing protein\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"RHO11_03580 dnaQ; (GenBank) DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"RHO11_02150 DNA polymerase III subunit chi\tK02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]" }, { "name":"RHO11_03960 DNA polymerase III subunit psi\tK02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]" }, { "name":"RHO11_08465 priA; (GenBank) primosomal protein N'\tK04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"RHO11_13555 priB; (GenBank) primosomal replication protein N\tK02686 priB; primosomal replication protein N" }, { "name":"RHO11_01545 priC; (GenBank) primosomal replication protein PriC\tK04067 priC; primosomal replication protein N''" } ] }, { "name":"03450 Non-homologous end-joining" }, { "name":"03460 Fanconi anemia pathway" } ] }, { "name":"09126 Chromosome", "children":[ { "name":"03082 ATP-dependent chromatin remodeling" }, { "name":"03083 Polycomb repressive complex" } ] }, { "name":"09125 Information processing in viruses", "children":[ { "name":"03230 Viral genome structure" }, { "name":"03240 Viral replication" }, { "name":"03250 Viral life cycle - HIV-1 [PATH:omo03250]", "children":[ { "name":"RHO11_09085 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" } ] }, { "name":"03260 Virion - Human immunodeficiency virus" }, { "name":"03271 Virion - Rotavirus" }, { "name":"03262 Virion - Coronavirus" }, { "name":"03261 Virion - Influenza virus" }, { "name":"03263 Virion - Enterovirus" }, { "name":"03264 Virion - Flavivirus and Alphavirus" }, { "name":"03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus" }, { "name":"03273 Virion - Lassa virus and SFTS virus" }, { "name":"03272 Virion - Hepatitis viruses" }, { "name":"03266 Virion - Herpesvirus" }, { "name":"03268 Virion - Orthopoxvirus" }, { "name":"03267 Virion - Adenovirus" }, { "name":"03259 Virion - Bacteriophages T4 and T7" }, { "name":"03258 Virion - Bacteriophage lambda" } ] } ] }, { "name":"09130 Environmental Information Processing", "children":[ { "name":"09131 Membrane transport", "children":[ { "name":"02010 ABC transporters [PATH:omo02010]", "children":[ { "name":"RHO11_00280 sulfate ABC transporter substrate-binding protein\tK23163 sbp; sulfate\/thiosulfate transport system substrate-binding protein" }, { "name":"RHO11_00285 cysT; (GenBank) sulfate ABC transporter permease subunit CysT\tK02046 cysU; sulfate\/thiosulfate transport system permease protein" }, { "name":"RHO11_00290 cysW; (GenBank) sulfate ABC transporter permease subunit CysW\tK02047 cysW; sulfate\/thiosulfate transport system permease protein" }, { "name":"RHO11_00295 sulfate ABC transporter ATP-binding protein\tK02045 cysA; sulfate\/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]" }, { "name":"RHO11_06325 ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"RHO11_06315 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"RHO11_06320 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"RHO11_06130 modA; (GenBank) molybdate ABC transporter substrate-binding protein\tK02020 modA; molybdate transport system substrate-binding protein" }, { "name":"RHO11_06135 modB; (GenBank) molybdate ABC transporter permease subunit\tK02018 modB; molybdate transport system permease protein" }, { "name":"RHO11_06140 modC; (GenBank) molybdenum ABC transporter ATP-binding protein\tK02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]" }, { "name":"RHO11_05785 modF; (GenBank) molybdate ABC transporter ATP-binding protein ModF\tK05776 modF; molybdate transport system ATP-binding protein" }, { "name":"RHO11_01245 thiB; (GenBank) thiamine ABC transporter substrate binding subunit\tK02064 thiB; thiamine transport system substrate-binding protein" }, { "name":"RHO11_01250 thiP; (GenBank) thiamine\/thiamine pyrophosphate ABC transporter permease\tK02063 thiP; thiamine transport system permease protein" }, { "name":"RHO11_01255 thiQ; (GenBank) thiamine ABC transporter ATP-binding protein ThiQ\tK02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]" }, { "name":"RHO11_00970 extracellular solute-binding protein\tK11073 potF; putrescine transport system substrate-binding protein" }, { "name":"RHO11_03015 extracellular solute-binding protein\tK11073 potF; putrescine transport system substrate-binding protein" }, { "name":"RHO11_07175 extracellular solute-binding protein\tK11073 potF; putrescine transport system substrate-binding protein" }, { "name":"RHO11_03000 ABC transporter permease subunit\tK11074 potI; putrescine transport system permease protein" }, { "name":"RHO11_03005 potH; (GenBank) putrescine ABC transporter permease PotH\tK11075 potH; putrescine transport system permease protein" }, { "name":"RHO11_03010 potG; (GenBank) putrescine ABC transporter ATP-binding subunit PotG\tK11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]" }, { "name":"RHO11_07610 mlaC; (GenBank) phospholipid-binding protein MlaC\tK07323 mlaC; phospholipid transport system substrate-binding protein" }, { "name":"RHO11_07615 mlaD; (GenBank) outer membrane lipid asymmetry maintenance protein MlaD\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"RHO11_07620 mlaE; (GenBank) lipid asymmetry maintenance ABC transporter permease subunit MlaE\tK02066 mlaE; phospholipid\/cholesterol\/gamma-HCH transport system permease protein" }, { "name":"RHO11_07605 STAS domain-containing protein\tK07122 mlaB; phospholipid transport system transporter-binding protein" }, { "name":"RHO11_07625 mlaF; (GenBank) phospholipid ABC transporter ATP-binding protein MlaF\tK02065 mlaF; phospholipid\/cholesterol\/gamma-HCH transport system ATP-binding protein" }, { "name":"RHO11_02300 rbsB; (GenBank) ribose ABC transporter substrate-binding protein RbsB\tK10439 rbsB; ribose transport system substrate-binding protein" }, { "name":"RHO11_02305 rbsC; (GenBank) ribose ABC transporter permease\tK10440 rbsC; ribose transport system permease protein" }, { "name":"RHO11_02310 rbsA; (GenBank) ribose ABC transporter ATP-binding protein RbsA\tK10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]" }, { "name":"RHO11_02315 rbsD; (GenBank) D-ribose pyranase\tK06726 rbsD; D-ribose pyranase [EC:5.4.99.62]" }, { "name":"RHO11_02535 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"RHO11_02530 pstC; (GenBank) phosphate ABC transporter permease PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"RHO11_02525 pstA; (GenBank) phosphate ABC transporter permease PstA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"RHO11_02520 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"RHO11_03170 lysine\/arginine\/ornithine ABC transporter substrate-binding protein\tK09997 artI; arginine transport system substrate-binding protein" }, { "name":"RHO11_03180 artM; (GenBank) arginine ABC transporter permease ArtM\tK09998 artM; arginine transport system permease protein" }, { "name":"RHO11_03175 artQ; (GenBank) arginine ABC transporter permease ArtQ\tK09999 artQ; arginine transport system permease protein" }, { "name":"RHO11_03165 artP; (GenBank) arginine ABC transporter ATP-binding protein ArtP\tK10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_04290 glutamate\/aspartate ABC transporter substrate-binding protein\tK10001 gltI; glutamate\/aspartate transport system substrate-binding protein" }, { "name":"RHO11_04300 ABC transporter permease subunit\tK10002 gltK; glutamate\/aspartate transport system permease protein" }, { "name":"RHO11_04295 amino acid ABC transporter permease\tK10003 gltJ; glutamate\/aspartate transport system permease protein" }, { "name":"RHO11_04305 amino acid ABC transporter ATP-binding protein\tK10004 gltL; glutamate\/aspartate transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_13020 hypothetical protein\tK10009 tcyB; L-cystine transport system permease protein" }, { "name":"RHO11_07365 amino acid ABC transporter substrate-binding protein\tK16961 yxeM; putative S-methylcysteine transport system substrate-binding protein" }, { "name":"RHO11_07360 amino acid ABC transporter permease\tK16962 yxeN; putative S-methylcysteine transport system permease protein" }, { "name":"RHO11_07355 amino acid ABC transporter ATP-binding protein\tK16963 yxeO; putative S-methylcysteine transport system ATP-binding protein" }, { "name":"RHO11_00910 MetQ\/NlpA family ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"RHO11_07960 MetQ\/NlpA family ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"RHO11_08285 metQ; (GenBank) methionine ABC transporter substrate-binding lipoprotein MetQ\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"RHO11_00920 methionine ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"RHO11_07970 methionine ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"RHO11_08280 metI; (GenBank) methionine ABC transporter permease MetI\tK02072 metI; D-methionine transport system permease protein" }, { "name":"RHO11_00915 methionine ABC transporter ATP-binding protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"RHO11_07965 ATP-binding cassette domain-containing protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"RHO11_08275 metN; (GenBank) methionine ABC transporter ATP-binding protein MetN\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"RHO11_02675 ABC transporter substrate-binding protein\tK12368 dppA; dipeptide transport system substrate-binding protein" }, { "name":"RHO11_05600 ABC transporter substrate-binding protein\tK12368 dppA; dipeptide transport system substrate-binding protein" }, { "name":"RHO11_05595 dppB; (GenBank) dipeptide ABC transporter permease DppB\tK12369 dppB; dipeptide transport system permease protein" }, { "name":"RHO11_05590 dppC; (GenBank) dipeptide ABC transporter permease DppC\tK12370 dppC; dipeptide transport system permease protein" }, { "name":"RHO11_05585 dppD; (GenBank) dipeptide ABC transporter ATP-binding protein\tK12371 dppD; dipeptide transport system ATP-binding protein" }, { "name":"RHO11_05580 peptide ABC transporter ATP-binding protein\tK12372 dppF; dipeptide transport system ATP-binding protein" }, { "name":"RHO11_11180 ABC transporter permease subunit\tK19227 sapB; cationic peptide transport system permease protein" }, { "name":"RHO11_11185 ABC transporter permease subunit\tK19228 sapC; cationic peptide transport system permease protein" }, { "name":"RHO11_11190 ATP-binding cassette domain-containing protein\tK19229 sapD; cationic peptide transport system ATP-binding protein" }, { "name":"RHO11_11195 ATP-binding cassette domain-containing protein\tK19230 sapF; cationic peptide transport system ATP-binding protein" }, { "name":"RHO11_00035 extracellular solute-binding protein\tK13893 yejA; microcin C transport system substrate-binding protein" }, { "name":"RHO11_00040 yejB; (GenBank) microcin C ABC transporter permease YejB\tK13894 yejB; microcin C transport system permease protein" }, { "name":"RHO11_00045 microcin C ABC transporter permease\tK13895 yejE; microcin C transport system permease protein" }, { "name":"RHO11_00050 yejF; (GenBank) microcin C ABC transporter ATP-binding protein YejF\tK13896 yejF; microcin C transport system ATP-binding protein" }, { "name":"RHO11_11730 znuA; (GenBank) zinc ABC transporter substrate-binding protein ZnuA\tK09815 znuA; zinc transport system substrate-binding protein" }, { "name":"RHO11_11720 znuB; (GenBank) zinc ABC transporter permease subunit ZnuB\tK09816 znuB; zinc transport system permease protein" }, { "name":"RHO11_11725 znuC; (GenBank) zinc ABC transporter ATP-binding protein ZnuC\tK09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]" }, { "name":"RHO11_12050 metal ABC transporter substrate-binding protein\tK11604 sitA; manganese\/iron transport system substrate-binding protein" }, { "name":"RHO11_12060 metal ABC transporter permease\tK11605 sitC; manganese\/iron transport system permease protein" }, { "name":"RHO11_12065 metal ABC transporter permease\tK11606 sitD; manganese\/iron transport system permease protein" }, { "name":"RHO11_12055 manganese\/iron ABC transporter ATP-binding protein\tK11607 sitB; manganese\/iron transport system ATP-binding protein" }, { "name":"RHO11_08530 biotin transporter BioY\tK03523 bioY; biotin transport system substrate-specific component" }, { "name":"RHO11_02220 lolE; (GenBank) lipoprotein-releasing ABC transporter permease subunit LolE\tK09808 lolC_E_F; lipoprotein-releasing system permease protein" }, { "name":"RHO11_02230 lolC; (GenBank) lipoprotein-releasing ABC transporter permease subunit LolC\tK09808 lolC_E_F; lipoprotein-releasing system permease protein" }, { "name":"RHO11_02225 lolD; (GenBank) lipoprotein-releasing ABC transporter ATP-binding protein LolD\tK09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]" }, { "name":"RHO11_02140 lptF; (GenBank) LPS export ABC transporter permease LptF\tK07091 lptF; lipopolysaccharide export system permease protein" }, { "name":"RHO11_02135 lptG; (GenBank) LPS export ABC transporter permease LptG\tK11720 lptG; lipopolysaccharide export system permease protein" }, { "name":"RHO11_10925 lptB; (GenBank) LPS export ABC transporter ATP-binding protein\tK06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]" }, { "name":"RHO11_09235 ftsX; (GenBank) permease-like cell division protein FtsX\tK09811 ftsX; cell division transport system permease protein" }, { "name":"RHO11_09230 ftsE; (GenBank) cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"RHO11_05360 msbA; (GenBank) lipid A ABC transporter ATP-binding protein\/permease MsbA\tK11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]" }, { "name":"RHO11_02690 ABC transporter ATP-binding protein\tK18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"RHO11_05625 cydC; (GenBank) cysteine\/glutathione ABC transporter ATP-binding protein\/permease CydC\tK16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC" }, { "name":"RHO11_05620 cydD; (GenBank) cysteine\/glutathione ABC transporter permease\/ATP-binding protein CydD\tK16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD" }, { "name":"RHO11_09700 MacB family efflux pump subunit\tK05685 macB; macrolide transport system ATP-binding\/permease protein [EC:7.6.2.-]" } ] }, { "name":"02060 Phosphotransferase system (PTS) [PATH:omo02060]", "children":[ { "name":"RHO11_09565 ptsI; (GenBank) phosphoenolpyruvate-protein phosphotransferase PtsI\tK08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]" }, { "name":"RHO11_02810 HPr family phosphocarrier protein\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"RHO11_09560 ptsH; (GenBank) phosphocarrier protein Hpr\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"RHO11_11280 PTS sugar transporter subunit IIA\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"RHO11_00540 PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09570 crr; (GenBank) PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09620 malX; (GenBank) maltose\/glucose-specific PTS transporter subunit IIBC\tK02791 malX; maltose\/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]" }, { "name":"RHO11_02480 treB; (GenBank) PTS trehalose transporter subunit IIBC\tK02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]" }, { "name":"RHO11_12980 murP; (GenBank) PTS N-acetylmuramic acid transporter subunit IIBC\tK11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]" }, { "name":"RHO11_08415 PTS mannitol transporter subunit IICBA\tK02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]" }, { "name":"RHO11_10580 PTS mannitol transporter subunit IICB\tK02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]" }, { "name":"RHO11_04685 PTS lactose\/cellobiose transporter subunit IIA\tK02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]" }, { "name":"RHO11_04680 PTS sugar transporter subunit IIB\tK02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]" }, { "name":"RHO11_04670 PTS transporter subunit EIIC\tK02761 celB; cellobiose PTS system EIIC component" }, { "name":"RHO11_10015 PTS sugar transporter subunit IIA\tK02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]" }, { "name":"RHO11_05510 mannose\/fructose\/sorbose PTS transporter subunit IIB\tK02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]" }, { "name":"RHO11_05515 PTS mannose\/fructose\/sorbose transporter subunit IIC\tK02795 manY; mannose PTS system EIIC component" }, { "name":"RHO11_05520 PTS system mannose\/fructose\/sorbose family transporter subunit IID\tK02796 manZ; mannose PTS system EIID component" }, { "name":"RHO11_10000 PTS sugar transporter subunit IIC\tK17466 dgaC; D-glucosaminate PTS system EIIC component" }, { "name":"RHO11_10005 PTS system mannose\/fructose\/sorbose family transporter subunit IID\tK17467 dgaD; D-glucosaminate PTS system EIID component" }, { "name":"RHO11_00195 PTS glucitol\/sorbitol transporter subunit IIA\tK02781 srlB; glucitol\/sorbitol PTS system EIIA component [EC:2.7.1.198]" }, { "name":"RHO11_07020 PTS glucitol\/sorbitol transporter subunit IIA\tK02781 srlB; glucitol\/sorbitol PTS system EIIA component [EC:2.7.1.198]" }, { "name":"RHO11_07025 PTS glucitol\/sorbitol transporter subunit IIB\tK02782 srlE; glucitol\/sorbitol PTS system EIIB component [EC:2.7.1.198]" }, { "name":"RHO11_07030 srlA; (GenBank) glucitol\/sorbitol-specific PTS transporter subunit IIC\tK02783 srlA; glucitol\/sorbitol PTS system EIIC component" }, { "name":"RHO11_03440 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_08105 gatA; (GenBank) PTS galactitol transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_09135 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_09740 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_03445 PTS galactitol transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_08110 gatB; (GenBank) PTS galactitol transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_09145 PTS sugar transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_09745 PTS sugar transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_03450 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_08115 PTS galactitol transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_09140 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_09750 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_00655 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_10575 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_11805 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_00650 PTS ascorbate-specific subunit IIBC\tK02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]" }, { "name":"RHO11_11810 PTS sugar transporter subunit IIB\tK02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]" }, { "name":"RHO11_06605 PTS ascorbate transporter subunit IIC\tK03475 ulaA; ascorbate PTS system EIIC component" }, { "name":"RHO11_11815 PTS ascorbate transporter subunit IIC\tK03475 ulaA; ascorbate PTS system EIIC component" }, { "name":"RHO11_00265 fruB; (GenBank) fused PTS fructose transporter subunit IIA\/HPr protein\tK11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]" }, { "name":"RHO11_00275 fruA; (GenBank) PTS fructose transporter subunit IIBC\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"RHO11_11285 PTS fructose transporter subunit IIBC\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"RHO11_00270 fruK; (GenBank) 1-phosphofructokinase\tK00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]" } ] }, { "name":"03070 Bacterial secretion system [PATH:omo03070]", "children":[ { "name":"RHO11_12825 tolC; (GenBank) outer membrane channel protein TolC\tK12340 tolC; outer membrane protein" }, { "name":"RHO11_06675 prepilin peptidase\tK02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]" }, { "name":"RHO11_09900 secD; (GenBank) protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"RHO11_09895 secF; (GenBank) protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"RHO11_11095 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"RHO11_07510 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"RHO11_10140 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"RHO11_09905 yajC; (GenBank) preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"RHO11_12230 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"RHO11_06975 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"RHO11_09225 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"RHO11_08335 secB; (GenBank) protein-export chaperone SecB\tK03071 secB; preprotein translocase subunit SecB" }, { "name":"RHO11_07085 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"RHO11_13055 tatA; (GenBank) twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"RHO11_13060 tatB; (GenBank) Sec-independent protein translocase protein TatB\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"RHO11_13065 tatC; (GenBank) twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" }, { "name":"RHO11_13480 type IV secretion system protein\tK03201 virB6; type IV secretion system protein VirB6" }, { "name":"RHO11_05240 vgrG; (GenBank) type VI secretion system tip protein VgrG\tK11904 vgrG; type VI secretion system secreted protein VgrG" }, { "name":"RHO11_11410 vgrG; (GenBank) type VI secretion system tip protein VgrG\tK11904 vgrG; type VI secretion system secreted protein VgrG" }, { "name":"RHO11_11400 Hcp family type VI secretion system effector\tK11903 hcp; type VI secretion system secreted protein Hcp" }, { "name":"RHO11_11465 tssJ; (GenBank) type VI secretion system lipoprotein TssJ\tK11906 vasD; type VI secretion system protein VasD" }, { "name":"RHO11_11445 ImcF-related family protein\tK11891 impL; type VI secretion system protein ImpL" }, { "name":"RHO11_11390 tssL; (GenBank) type VI secretion system protein TssL, short form\tK11892 impK; type VI secretion system protein ImpK" }, { "name":"RHO11_11405 tssH; (GenBank) type VI secretion system ATPase TssH\tK11907 vasG; type VI secretion system protein VasG" } ] } ] }, { "name":"09132 Signal transduction", "children":[ { "name":"02020 Two-component system [PATH:omo02020]", "children":[ { "name":"RHO11_02540 phoR; (GenBank) phosphate regulon sensor histidine kinase PhoR\tK07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]" }, { "name":"RHO11_02545 phoB; (GenBank) phosphate regulon transcriptional regulator PhoB\tK07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB" }, { "name":"RHO11_07050 alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_13845 phoA; (GenBank) alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_02535 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"RHO11_10205 phosphatase PAP2 family protein\tK09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]" }, { "name":"RHO11_08585 cpxA; (GenBank) envelope stress sensor histidine kinase CpxA\tK07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]" }, { "name":"RHO11_08590 response regulator\tK07662 cpxR; two-component system, OmpR family, response regulator CpxR" }, { "name":"RHO11_11315 ATP-binding protein\tK07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]" }, { "name":"RHO11_11320 winged helix-turn-helix domain-containing protein\tK07661 rstA; two-component system, OmpR family, response regulator RstA" }, { "name":"RHO11_04145 creC; (GenBank) two-component system sensor histidine kinase CreC\tK07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]" }, { "name":"RHO11_04150 creB; (GenBank) two-component system response regulator CreB\tK07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB" }, { "name":"RHO11_08790 pmrB; (GenBank) two-component system sensor histidine kinase PmrB\tK07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]" }, { "name":"RHO11_08785 response regulator\tK07771 basR; two-component system, OmpR family, response regulator BasR" }, { "name":"RHO11_07415 heavy metal sensor histidine kinase\tK07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]" }, { "name":"RHO11_07410 heavy metal response regulator transcription factor\tK07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR" }, { "name":"RHO11_09325 qseC; (GenBank) quorum sensing histidine kinase QseC\tK07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]" }, { "name":"RHO11_09330 response regulator\tK07666 qseB; two-component system, OmpR family, response regulator QseB" }, { "name":"RHO11_10190 potassium-transporting ATPase subunit KdpA\tK01546 kdpA; potassium-transporting ATPase potassium-binding subunit" }, { "name":"RHO11_11025 dnaA; (GenBank) chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"RHO11_08625 VanW family protein\tK18346 vanW; vancomycin resistance protein VanW" }, { "name":"RHO11_02695 FepA family TonB-dependent siderophore receptor\tK19611 fepA; ferric enterobactin receptor" }, { "name":"RHO11_04190 TonB-dependent siderophore receptor\tK19611 fepA; ferric enterobactin receptor" }, { "name":"RHO11_12550 sensor histidine kinase\tK07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]" }, { "name":"RHO11_12545 response regulator\tK07702 dpiA; two-component system, CitB family, response regulator CitB" }, { "name":"RHO11_12565 citC; (GenBank) [citrate (pro-3S)-lyase] ligase\tK01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]" }, { "name":"RHO11_12570 citD; (GenBank) citrate lyase acyl carrier protein\tK01646 citD; citrate lyase subunit gamma (acyl carrier protein)" }, { "name":"RHO11_12575 citE; (GenBank) citrate (pro-3S)-lyase subunit beta\tK01644 citE; citrate lyase subunit beta \/ citryl-CoA lyase [EC:4.1.3.34]" }, { "name":"RHO11_12580 citF; (GenBank) citrate lyase subunit alpha\tK01643 citF; citrate lyase subunit alpha \/ citrate CoA-transferase [EC:2.8.3.10]" }, { "name":"RHO11_12585 citX; (GenBank) citrate lyase holo-[acyl-carrier protein] synthase\tK05964 citX; holo-ACP synthase [EC:2.7.7.61]" }, { "name":"RHO11_12540 citG; (GenBank) triphosphoribosyl-dephospho-CoA synthase CitG\tK05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]" }, { "name":"RHO11_00805 response regulator\tK11615 malR; two-component system, CitB family, response regulator MalR" }, { "name":"RHO11_00825 NADP-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"RHO11_05665 sensor histidine kinase\tK27882 btsS; two-component system, LytTR family, low-concentration pyruvate sensor kinase [EC:2.7.13.3]" }, { "name":"RHO11_05670 btsR; (GenBank) two-component system response regulator BtsR\tK27883 btsR; two-component system, LytTR family, low-concentration pyruvate response regulator" }, { "name":"RHO11_05675 carbon starvation CstA family protein\tK23676 btsT; pyruvate\/proton symporter" }, { "name":"RHO11_08680 narX; (GenBank) nitrate\/nitrite two-component system sensor histidine kinase NarX\tK07673 narX; two-component system, NarL family, nitrate\/nitrite sensor histidine kinase NarX [EC:2.7.13.3]" }, { "name":"RHO11_08675 narL; (GenBank) two-component system response regulator NarL\tK07684 narL; two-component system, NarL family, nitrate\/nitrite response regulator NarL" }, { "name":"RHO11_02430 nitrate reductase subunit alpha\tK00370 narG; nitrate reductase \/ nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02435 narH; (GenBank) nitrate reductase subunit beta\tK00371 narH; nitrate reductase \/ nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02445 narI; (GenBank) respiratory nitrate reductase subunit gamma\tK00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02440 narJ; (GenBank) nitrate reductase molybdenum cofactor assembly chaperone\tK00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ\/NarW" }, { "name":"RHO11_05550 frdA; (GenBank) fumarate reductase (quinol) flavoprotein subunit\tK00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"RHO11_05545 succinate dehydrogenase\/fumarate reductase iron-sulfur subunit\tK00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"RHO11_05540 hypothetical protein\tK00246 frdC; succinate dehydrogenase subunit C" }, { "name":"RHO11_05535 frdD; (GenBank) fumarate reductase subunit FrdD\tK00247 frdD; succinate dehydrogenase subunit D" }, { "name":"RHO11_06750 csrA; (GenBank) carbon storage regulator CsrA\tK03563 csrA; carbon storage regulator" }, { "name":"RHO11_10260 molecular chaperone\tK07346 fimC; fimbrial chaperone protein" }, { "name":"RHO11_06450 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" }, { "name":"RHO11_10255 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" }, { "name":"RHO11_11515 glnD; (GenBank) bifunctional uridylyltransferase\/uridylyl-removing protein GlnD\tK00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]" }, { "name":"RHO11_13535 glnB; (GenBank) nitrogen regulatory protein P-II\tK04751 glnB; nitrogen regulatory protein P-II 1" }, { "name":"RHO11_09445 glnL; (GenBank) nitrogen regulation protein NR(II)\tK07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]" }, { "name":"RHO11_09440 glnG; (GenBank) nitrogen regulation protein NR(I)\tK07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG" }, { "name":"RHO11_09450 glnA; (GenBank) glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"RHO11_10920 RNA polymerase factor sigma-54\tK03092 rpoN; RNA polymerase sigma-54 factor" }, { "name":"RHO11_04305 amino acid ABC transporter ATP-binding protein\tK10004 gltL; glutamate\/aspartate transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_04300 ABC transporter permease subunit\tK10002 gltK; glutamate\/aspartate transport system permease protein" }, { "name":"RHO11_04295 amino acid ABC transporter permease\tK10003 gltJ; glutamate\/aspartate transport system permease protein" }, { "name":"RHO11_04290 glutamate\/aspartate ABC transporter substrate-binding protein\tK10001 gltI; glutamate\/aspartate transport system substrate-binding protein" }, { "name":"RHO11_07900 crp; (GenBank) cAMP-activated global transcriptional regulator CRP\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"RHO11_12875 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"RHO11_12880 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"RHO11_12825 tolC; (GenBank) outer membrane channel protein TolC\tK12340 tolC; outer membrane protein" }, { "name":"RHO11_06725 polysaccharide export protein\tK01991 wza; polysaccharide biosynthesis\/export protein" }, { "name":"RHO11_06720 hypothetical protein\tK25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"RHO11_06715 polysaccharide biosynthesis tyrosine autokinase\tK16692 etk-wzc; tyrosine-protein kinase Etk\/Wzc [EC:2.7.10.3]" }, { "name":"RHO11_10795 pectinesterase family protein\tK01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]" } ] }, { "name":"04010 MAPK signaling pathway" }, { "name":"04013 MAPK signaling pathway - fly" }, { "name":"04016 MAPK signaling pathway - plant" }, { "name":"04011 MAPK signaling pathway - yeast" }, { "name":"04012 ErbB signaling pathway" }, { "name":"04014 Ras signaling pathway" }, { "name":"04015 Rap1 signaling pathway" }, { "name":"04310 Wnt signaling pathway" }, { "name":"04330 Notch signaling pathway" }, { "name":"04340 Hedgehog signaling pathway" }, { "name":"04341 Hedgehog signaling pathway - fly" }, { "name":"04350 TGF-beta signaling pathway" }, { "name":"04390 Hippo signaling pathway" }, { "name":"04391 Hippo signaling pathway - fly" }, { "name":"04392 Hippo signaling pathway - multiple species" }, { "name":"04370 VEGF signaling pathway" }, { "name":"04371 Apelin signaling pathway" }, { "name":"04630 JAK-STAT signaling pathway" }, { "name":"04064 NF-kappa B signaling pathway" }, { "name":"04668 TNF signaling pathway" }, { "name":"04066 HIF-1 signaling pathway" }, { "name":"04068 FoxO signaling pathway" }, { "name":"04020 Calcium signaling pathway" }, { "name":"04070 Phosphatidylinositol signaling system" }, { "name":"04072 Phospholipase D signaling pathway" }, { "name":"04071 Sphingolipid signaling pathway" }, { "name":"04024 cAMP signaling pathway" }, { "name":"04022 cGMP-PKG signaling pathway" }, { "name":"04151 PI3K-Akt signaling pathway" }, { "name":"04152 AMPK signaling pathway" }, { "name":"04150 mTOR signaling pathway" }, { "name":"04075 Plant hormone signal transduction" } ] }, { "name":"09133 Signaling molecules and interaction", "children":[ { "name":"04080 Neuroactive ligand-receptor interaction" }, { "name":"04082 Neuroactive ligand signaling" }, { "name":"04081 Hormone signaling" }, { "name":"04060 Cytokine-cytokine receptor interaction" }, { "name":"04061 Viral protein interaction with cytokine and cytokine receptor" }, { "name":"04512 ECM-receptor interaction" }, { "name":"04514 Cell adhesion molecule (CAM) interaction" }, { "name":"04517 IgSF CAM signaling" }, { "name":"04518 Integrin signaling" }, { "name":"04519 Cadherin signaling" } ] } ] }, { "name":"09140 Cellular Processes", "children":[ { "name":"09141 Transport and catabolism", "children":[ { "name":"04144 Endocytosis" }, { "name":"04145 Phagocytosis", "children":[ { "name":"RHO11_07050 alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_13845 phoA; (GenBank) alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" } ] }, { "name":"04142 Lysosome biogenesis" }, { "name":"04146 Peroxisome [PATH:omo04146]", "children":[ { "name":"RHO11_12235 nudC; (GenBank) NAD(+) diphosphatase\tK03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]" }, { "name":"RHO11_00565 icd; (GenBank) NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"RHO11_05000 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"RHO11_09355 Fe-Mn family superoxide dismutase\tK04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]" } ] }, { "name":"04149 Peroxisome - yeast" }, { "name":"04140 Autophagy - animal" }, { "name":"04138 Autophagy - yeast" }, { "name":"04136 Autophagy - other" }, { "name":"04137 Mitophagy - animal" }, { "name":"04139 Mitophagy - yeast" }, { "name":"04148 Efferocytosis" } ] }, { "name":"09143 Cell growth and death", "children":[ { "name":"04110 Cell cycle" }, { "name":"04111 Cell cycle - yeast" }, { "name":"04112 Cell cycle - Caulobacter" }, { "name":"04113 Meiosis - yeast" }, { "name":"04114 Oocyte meiosis" }, { "name":"04210 Apoptosis" }, { "name":"04214 Apoptosis - fly" }, { "name":"04215 Apoptosis - multiple species" }, { "name":"04216 Ferroptosis" }, { "name":"04217 Necroptosis" }, { "name":"04115 p53 signaling pathway" }, { "name":"04218 Cellular senescence" }, { "name":"04156 Integrated stress response (ISR) signaling pathway [PATH:omo04156]", "children":[ { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" }, { "name":"RHO11_03250 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_04955 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_06395 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_09115 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_12270 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_08910 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"RHO11_10780 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" } ] } ] }, { "name":"09144 Cellular community - eukaryotes", "children":[ { "name":"04510 Focal adhesion" }, { "name":"04520 Adherens junction" }, { "name":"04530 Tight junction" }, { "name":"04540 Gap junction" }, { "name":"04550 Signaling pathways regulating pluripotency of stem cells" } ] }, { "name":"09145 Cellular community - prokaryotes", "children":[ { "name":"02024 Quorum sensing [PATH:omo02024]", "children":[ { "name":"RHO11_00395 luxS; (GenBank) S-ribosylhomocysteine lyase\tK07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]" }, { "name":"RHO11_11650 hfq; (GenBank) RNA chaperone Hfq\tK03666 hfq; host factor-I protein" }, { "name":"RHO11_08535 anthranilate synthase component 1\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" }, { "name":"RHO11_07295 3-deoxy-7-phosphoheptulonate synthase\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"RHO11_10965 aroG; (GenBank) 3-deoxy-7-phosphoheptulonate synthase AroG\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"RHO11_09325 qseC; (GenBank) quorum sensing histidine kinase QseC\tK07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]" }, { "name":"RHO11_09330 response regulator\tK07666 qseB; two-component system, OmpR family, response regulator QseB" }, { "name":"RHO11_11370 LuxR family transcriptional regulator\tK19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR" }, { "name":"RHO11_10805 hypothetical protein\tK01728 pel; pectate lyase [EC:4.2.2.2]" }, { "name":"RHO11_07900 crp; (GenBank) cAMP-activated global transcriptional regulator CRP\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"RHO11_13120 zur; (GenBank) zinc uptake transcriptional repressor Zur\tK09823 zur; Fur family transcriptional regulator, zinc uptake regulator" }, { "name":"RHO11_03125 ribA; (GenBank) GTP cyclohydrolase II\tK01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]" }, { "name":"RHO11_11275 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase\/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"RHO11_08100 lacD; (GenBank) tagatose-bisphosphate aldolase\tK01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]" }, { "name":"RHO11_12230 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"RHO11_11095 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"RHO11_07510 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"RHO11_10140 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"RHO11_09905 yajC; (GenBank) preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"RHO11_06975 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"RHO11_09225 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"RHO11_08335 secB; (GenBank) protein-export chaperone SecB\tK03071 secB; preprotein translocase subunit SecB" }, { "name":"RHO11_07085 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" } ] }, { "name":"05111 Biofilm formation - Vibrio cholerae" }, { "name":"02025 Biofilm formation - Pseudomonas aeruginosa" }, { "name":"02026 Biofilm formation - Escherichia coli" } ] }, { "name":"09142 Cell motility", "children":[ { "name":"02030 Bacterial chemotaxis [PATH:omo02030]", "children":[ { "name":"RHO11_02300 rbsB; (GenBank) ribose ABC transporter substrate-binding protein RbsB\tK10439 rbsB; ribose transport system substrate-binding protein" }, { "name":"RHO11_02675 ABC transporter substrate-binding protein\tK12368 dppA; dipeptide transport system substrate-binding protein" }, { "name":"RHO11_05600 ABC transporter substrate-binding protein\tK12368 dppA; dipeptide transport system substrate-binding protein" } ] }, { "name":"02040 Flagellar assembly [PATH:omo02040]", "children":[ { "name":"RHO11_12355 rpoD; (GenBank) RNA polymerase sigma factor RpoD\tK03086 rpoD; RNA polymerase primary sigma factor" }, { "name":"RHO11_10920 RNA polymerase factor sigma-54\tK03092 rpoN; RNA polymerase sigma-54 factor" } ] }, { "name":"04814 Motor proteins" }, { "name":"04820 Cytoskeleton in muscle cells", "children":[ { "name":"RHO11_05105 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" } ] }, { "name":"04810 Regulation of actin cytoskeleton" } ] } ] }, { "name":"09150 Organismal Systems", "children":[ { "name":"09151 Immune system", "children":[ { "name":"04640 Hematopoietic cell lineage" }, { "name":"04610 Complement and coagulation cascades" }, { "name":"04611 Platelet activation" }, { "name":"04613 Neutrophil extracellular trap formation" }, { "name":"04620 Toll-like receptor signaling pathway" }, { "name":"04624 Toll and Imd signaling pathway" }, { "name":"04621 NOD-like receptor signaling pathway" }, { "name":"04622 RIG-I-like receptor signaling pathway" }, { "name":"04623 Cytosolic DNA-sensing pathway" }, { "name":"04625 C-type lectin receptor signaling pathway" }, { "name":"04650 Natural killer cell mediated cytotoxicity" }, { "name":"04612 Antigen processing and presentation" }, { "name":"04660 T cell receptor signaling pathway" }, { "name":"04658 Th1 and Th2 cell differentiation" }, { "name":"04659 Th17 cell differentiation" }, { "name":"04657 IL-17 signaling pathway" }, { "name":"04662 B cell receptor signaling pathway" }, { "name":"04664 Fc epsilon RI signaling pathway" }, { "name":"04666 Fc gamma R-mediated phagosome formation" }, { "name":"04670 Leukocyte transendothelial migration" }, { "name":"04672 Intestinal immune network for IgA production" }, { "name":"04062 Chemokine signaling pathway" } ] }, { "name":"09152 Endocrine system", "children":[ { "name":"04911 Insulin secretion" }, { "name":"04910 Insulin signaling pathway" }, { "name":"04922 Glucagon signaling pathway" }, { "name":"04923 Regulation of lipolysis in adipocytes" }, { "name":"04920 Adipocytokine signaling pathway" }, { "name":"03320 PPAR signaling pathway" }, { "name":"04929 GnRH secretion" }, { "name":"04912 GnRH signaling pathway" }, { "name":"04913 Ovarian steroidogenesis" }, { "name":"04915 Estrogen signaling pathway" }, { "name":"04914 Progesterone-mediated oocyte maturation" }, { "name":"04917 Prolactin signaling pathway" }, { "name":"04921 Oxytocin signaling pathway" }, { "name":"04926 Relaxin signaling pathway" }, { "name":"04935 Growth hormone synthesis, secretion and action" }, { "name":"04918 Thyroid hormone synthesis" }, { "name":"04919 Thyroid hormone signaling pathway" }, { "name":"04928 Parathyroid hormone synthesis, secretion and action" }, { "name":"04916 Melanogenesis" }, { "name":"04924 Renin secretion" }, { "name":"04614 Renin-angiotensin system" }, { "name":"04925 Aldosterone synthesis and secretion" }, { "name":"04927 Cortisol synthesis and secretion" } ] }, { "name":"09153 Circulatory system", "children":[ { "name":"04260 Cardiac muscle contraction" }, { "name":"04261 Adrenergic signaling in cardiomyocytes" }, { "name":"04270 Vascular smooth muscle contraction" } ] }, { "name":"09154 Digestive system", "children":[ { "name":"04970 Salivary secretion" }, { "name":"04971 Gastric acid secretion" }, { "name":"04972 Pancreatic secretion" }, { "name":"04976 Bile secretion" }, { "name":"04973 Carbohydrate digestion and absorption" }, { "name":"04974 Protein digestion and absorption" }, { "name":"04975 Fat digestion and absorption" }, { "name":"04979 Cholesterol metabolism" }, { "name":"04977 Vitamin digestion and absorption" }, { "name":"04981 Folate transport and metabolism [PATH:omo04981]", "children":[ { "name":"RHO11_06105 5-formyltetrahydrofolate cyclo-ligase\tK01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]" }, { "name":"RHO11_08495 folA; (GenBank) type 3 dihydrofolate reductase\tK00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]" }, { "name":"RHO11_00120 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"RHO11_06865 thyA; (GenBank) thymidylate synthase\tK00560 thyA; thymidylate synthase [EC:2.1.1.45]" }, { "name":"RHO11_03860 mmuM; (GenBank) homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" } ] }, { "name":"04980 Cobalamin transport and metabolism" }, { "name":"04978 Mineral absorption" } ] }, { "name":"09155 Excretory system", "children":[ { "name":"04962 Vasopressin-regulated water reabsorption" }, { "name":"04960 Aldosterone-regulated sodium reabsorption" }, { "name":"04961 Endocrine and other factor-regulated calcium reabsorption" }, { "name":"04964 Proximal tubule bicarbonate reclamation" }, { "name":"04966 Collecting duct acid secretion" } ] }, { "name":"09156 Nervous system", "children":[ { "name":"04724 Glutamatergic synapse" }, { "name":"04727 GABAergic synapse" }, { "name":"04725 Cholinergic synapse" }, { "name":"04728 Dopaminergic synapse" }, { "name":"04726 Serotonergic synapse" }, { "name":"04720 Long-term potentiation" }, { "name":"04730 Long-term depression" }, { "name":"04723 Retrograde endocannabinoid signaling" }, { "name":"04721 Synaptic vesicle cycle" }, { "name":"04722 Neurotrophin signaling pathway" } ] }, { "name":"09157 Sensory system", "children":[ { "name":"04744 Phototransduction" }, { "name":"04745 Phototransduction - fly" }, { "name":"04740 Olfactory transduction" }, { "name":"04742 Taste transduction" }, { "name":"04750 Inflammatory mediator regulation of TRP channels" } ] }, { "name":"09158 Development and regeneration", "children":[ { "name":"04320 Dorso-ventral axis formation" }, { "name":"04360 Axon guidance" }, { "name":"04361 Axon regeneration" }, { "name":"04380 Osteoclast differentiation" }, { "name":"04382 Cornified envelope formation" } ] }, { "name":"09149 Aging", "children":[ { "name":"04211 Longevity regulating pathway" }, { "name":"04212 Longevity regulating pathway - worm" }, { "name":"04213 Longevity regulating pathway - multiple species" } ] }, { "name":"09159 Environmental adaptation", "children":[ { "name":"04710 Circadian rhythm" }, { "name":"04713 Circadian entrainment" }, { "name":"04711 Circadian rhythm - fly" }, { "name":"04712 Circadian rhythm - plant" }, { "name":"04714 Thermogenesis" }, { "name":"04626 Plant-pathogen interaction" } ] } ] }, { "name":"09160 Human Diseases", "children":[ { "name":"09161 Cancer: overview", "children":[ { "name":"05200 Pathways in cancer" }, { "name":"05202 Transcriptional misregulation in cancer" }, { "name":"05206 MicroRNAs in cancer" }, { "name":"05205 Proteoglycans in cancer" }, { "name":"05204 Chemical carcinogenesis - DNA adducts" }, { "name":"05207 Chemical carcinogenesis - receptor activation" }, { "name":"05208 Chemical carcinogenesis - reactive oxygen species" }, { "name":"05203 Viral carcinogenesis" }, { "name":"05230 Central carbon metabolism in cancer" }, { "name":"05231 Choline metabolism in cancer" }, { "name":"05235 PD-L1 expression and PD-1 checkpoint pathway in cancer" } ] }, { "name":"09162 Cancer: specific types", "children":[ { "name":"05210 Colorectal cancer" }, { "name":"05212 Pancreatic cancer" }, { "name":"05225 Hepatocellular carcinoma" }, { "name":"05226 Gastric cancer" }, { "name":"05214 Glioma" }, { "name":"05216 Thyroid cancer" }, { "name":"05221 Acute myeloid leukemia" }, { "name":"05220 Chronic myeloid leukemia" }, { "name":"05217 Basal cell carcinoma" }, { "name":"05218 Melanoma" }, { "name":"05211 Renal cell carcinoma" }, { "name":"05219 Bladder cancer" }, { "name":"05215 Prostate cancer" }, { "name":"05213 Endometrial cancer" }, { "name":"05224 Breast cancer" }, { "name":"05222 Small cell lung cancer" }, { "name":"05223 Non-small cell lung cancer" } ] }, { "name":"09172 Infectious disease: viral", "children":[ { "name":"05166 Human T-cell leukemia virus 1 infection" }, { "name":"05170 Human immunodeficiency virus 1 infection" }, { "name":"05161 Hepatitis B" }, { "name":"05160 Hepatitis C" }, { "name":"05171 Coronavirus disease" }, { "name":"05164 Influenza A" }, { "name":"05162 Measles" }, { "name":"05168 Herpes simplex virus 1 infection" }, { "name":"05163 Human cytomegalovirus infection" }, { "name":"05167 Kaposi sarcoma-associated herpesvirus infection" }, { "name":"05169 Epstein-Barr virus infection" }, { "name":"05165 Human papillomavirus infection" } ] }, { "name":"09171 Infectious disease: bacterial", "children":[ { "name":"05110 Vibrio cholerae infection" }, { "name":"05120 Epithelial cell signaling in Helicobacter pylori infection" }, { "name":"05130 Pathogenic Escherichia coli infection" }, { "name":"05132 Salmonella infection" }, { "name":"05131 Shigellosis" }, { "name":"05135 Yersinia infection" }, { "name":"05133 Pertussis" }, { "name":"05134 Legionellosis" }, { "name":"05150 Staphylococcus aureus infection" }, { "name":"05152 Tuberculosis" }, { "name":"05100 Bacterial invasion of epithelial cells" } ] }, { "name":"09174 Infectious disease: parasitic", "children":[ { "name":"05146 Amoebiasis" }, { "name":"05144 Malaria" }, { "name":"05145 Toxoplasmosis" }, { "name":"05140 Leishmaniasis" }, { "name":"05142 Chagas disease" }, { "name":"05143 African trypanosomiasis" } ] }, { "name":"09163 Immune disease", "children":[ { "name":"05310 Asthma" }, { "name":"05322 Systemic lupus erythematosus" }, { "name":"05323 Rheumatoid arthritis" }, { "name":"05320 Autoimmune thyroid disease" }, { "name":"05321 Inflammatory bowel disease" }, { "name":"05330 Allograft rejection" }, { "name":"05332 Graft-versus-host disease" }, { "name":"05340 Primary immunodeficiency" } ] }, { "name":"09164 Neurodegenerative disease", "children":[ { "name":"05010 Alzheimer disease" }, { "name":"05012 Parkinson disease" }, { "name":"05014 Amyotrophic lateral sclerosis" }, { "name":"05016 Huntington disease" }, { "name":"05017 Spinocerebellar ataxia" }, { "name":"05020 Prion disease" }, { "name":"05022 Pathways of neurodegeneration - multiple diseases" } ] }, { "name":"09165 Substance dependence", "children":[ { "name":"05030 Cocaine addiction" }, { "name":"05031 Amphetamine addiction" }, { "name":"05032 Morphine addiction" }, { "name":"05033 Nicotine addiction" }, { "name":"05034 Alcoholism" } ] }, { "name":"09166 Cardiovascular disease", "children":[ { "name":"05417 Lipid and atherosclerosis" }, { "name":"05418 Fluid shear stress and atherosclerosis" }, { "name":"05410 Hypertrophic cardiomyopathy" }, { "name":"05412 Arrhythmogenic right ventricular cardiomyopathy" }, { "name":"05414 Dilated cardiomyopathy" }, { "name":"05415 Diabetic cardiomyopathy" }, { "name":"05416 Viral myocarditis" } ] }, { "name":"09167 Endocrine and metabolic disease", "children":[ { "name":"04930 Type II diabetes mellitus" }, { "name":"04940 Type I diabetes mellitus" }, { "name":"04950 Maturity onset diabetes of the young" }, { "name":"04936 Alcoholic liver disease" }, { "name":"04932 Non-alcoholic fatty liver disease" }, { "name":"04931 Insulin resistance" }, { "name":"04933 AGE-RAGE signaling pathway in diabetic complications" }, { "name":"04934 Cushing syndrome" } ] }, { "name":"09175 Drug resistance: antimicrobial", "children":[ { "name":"01501 beta-Lactam resistance [PATH:omo01501]", "children":[ { "name":"RHO11_12780 AmpG family muropeptide MFS transporter\tK08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG" }, { "name":"RHO11_03090 nagZ; (GenBank) beta-N-acetylhexosaminidase\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"RHO11_12945 glycoside hydrolase family 3 protein\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"RHO11_06965 RNA ligase RtcB family protein\tK18148 rtcB; release factor H-coupled RctB family protein" }, { "name":"RHO11_00380 efflux RND transporter periplasmic adaptor subunit\tK03585 acrA; membrane fusion protein, multidrug efflux system" }, { "name":"RHO11_00375 efflux RND transporter permease subunit\tK18138 acrB; multidrug efflux pump" }, { "name":"RHO11_12825 tolC; (GenBank) outer membrane channel protein TolC\tK12340 tolC; outer membrane protein" }, { "name":"RHO11_07420 transglycosylase domain-containing protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"RHO11_09505 mrdA; (GenBank) penicillin-binding protein 2\tK05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]" }, { "name":"RHO11_05895 ftsI; (GenBank) peptidoglycan glycosyltransferase FtsI\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" } ] }, { "name":"01502 Vancomycin resistance [PATH:omo01502]", "children":[ { "name":"RHO11_05855 D-alanine--D-alanine ligase\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"RHO11_06270 alr; (GenBank) alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"RHO11_05885 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" }, { "name":"RHO11_05880 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"RHO11_05865 murG; (GenBank) undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"RHO11_08625 VanW family protein\tK18346 vanW; vancomycin resistance protein VanW" } ] }, { "name":"01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:omo01503]", "children":[ { "name":"RHO11_12535 pagP; (GenBank) lipid IV(A) palmitoyltransferase PagP\tK12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]" }, { "name":"RHO11_08790 pmrB; (GenBank) two-component system sensor histidine kinase PmrB\tK07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]" }, { "name":"RHO11_08785 response regulator\tK07771 basR; two-component system, OmpR family, response regulator BasR" }, { "name":"RHO11_08780 eptA; (GenBank) phosphoethanolamine transferase EptA\tK03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]" }, { "name":"RHO11_11180 ABC transporter permease subunit\tK19227 sapB; cationic peptide transport system permease protein" }, { "name":"RHO11_11185 ABC transporter permease subunit\tK19228 sapC; cationic peptide transport system permease protein" }, { "name":"RHO11_11190 ATP-binding cassette domain-containing protein\tK19229 sapD; cationic peptide transport system ATP-binding protein" }, { "name":"RHO11_11195 ATP-binding cassette domain-containing protein\tK19230 sapF; cationic peptide transport system ATP-binding protein" }, { "name":"RHO11_08585 cpxA; (GenBank) envelope stress sensor histidine kinase CpxA\tK07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]" }, { "name":"RHO11_08590 response regulator\tK07662 cpxR; two-component system, OmpR family, response regulator CpxR" }, { "name":"RHO11_09165 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"RHO11_09000 DsbA family protein\tK03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]" }, { "name":"RHO11_12935 thiol:disulfide interchange protein DsbA\/DsbL\tK03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]" }, { "name":"RHO11_09085 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" }, { "name":"RHO11_00380 efflux RND transporter periplasmic adaptor subunit\tK03585 acrA; membrane fusion protein, multidrug efflux system" }, { "name":"RHO11_00375 efflux RND transporter permease subunit\tK18138 acrB; multidrug efflux pump" }, { "name":"RHO11_12825 tolC; (GenBank) outer membrane channel protein TolC\tK12340 tolC; outer membrane protein" }, { "name":"RHO11_09680 lpxA; (GenBank) acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase\tK00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]" } ] } ] }, { "name":"09176 Drug resistance: antineoplastic", "children":[ { "name":"01521 EGFR tyrosine kinase inhibitor resistance" }, { "name":"01524 Platinum drug resistance" }, { "name":"01523 Antifolate resistance" }, { "name":"01522 Endocrine resistance" } ] } ] }, { "name":"09180 Brite Hierarchies", "children":[ { "name":"09181 Protein families: metabolism", "children":[ { "name":"01000 Enzymes [BR:omo01000]" }, { "name":"01001 Protein kinases [BR:omo01001]", "children":[ { "name":"RHO11_06715 polysaccharide biosynthesis tyrosine autokinase\tK16692 etk-wzc; tyrosine-protein kinase Etk\/Wzc [EC:2.7.10.3]" }, { "name":"RHO11_02540 phoR; (GenBank) phosphate regulon sensor histidine kinase PhoR\tK07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]" }, { "name":"RHO11_11315 ATP-binding protein\tK07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]" }, { "name":"RHO11_08585 cpxA; (GenBank) envelope stress sensor histidine kinase CpxA\tK07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]" }, { "name":"RHO11_04145 creC; (GenBank) two-component system sensor histidine kinase CreC\tK07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]" }, { "name":"RHO11_08790 pmrB; (GenBank) two-component system sensor histidine kinase PmrB\tK07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]" }, { "name":"RHO11_07415 heavy metal sensor histidine kinase\tK07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]" }, { "name":"RHO11_09325 qseC; (GenBank) quorum sensing histidine kinase QseC\tK07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]" }, { "name":"RHO11_08240 ATP-binding protein\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"RHO11_08680 narX; (GenBank) nitrate\/nitrite two-component system sensor histidine kinase NarX\tK07673 narX; two-component system, NarL family, nitrate\/nitrite sensor histidine kinase NarX [EC:2.7.13.3]" }, { "name":"RHO11_12550 sensor histidine kinase\tK07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]" }, { "name":"RHO11_05665 sensor histidine kinase\tK27882 btsS; two-component system, LytTR family, low-concentration pyruvate sensor kinase [EC:2.7.13.3]" }, { "name":"RHO11_09445 glnL; (GenBank) nitrogen regulation protein NR(II)\tK07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]" } ] }, { "name":"01009 Protein phosphatases and associated proteins [BR:omo01009]", "children":[ { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" }, { "name":"RHO11_12470 serB; (GenBank) phosphoserine phosphatase\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" }, { "name":"RHO11_00715 pyridoxal phosphatase\tK28853 ybhA; pyridoxal phosphatase [EC:3.1.3.74]" }, { "name":"RHO11_12035 Cof-type HAD-IIB family hydrolase\tK28854 yigL; sugar-phosphatase \/ pyridoxal phosphatase [EC:3.1.3.23 3.1.3.74]" } ] }, { "name":"01002 Peptidases and inhibitors [BR:omo01002]", "children":[ { "name":"RHO11_13095 lspA; (GenBank) signal peptidase II\tK03101 lspA; signal peptidase II [EC:3.4.23.36]" }, { "name":"RHO11_06675 prepilin peptidase\tK02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]" }, { "name":"RHO11_01565 guaA; (GenBank) glutamine-hydrolyzing GMP synthase\tK01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]" }, { "name":"RHO11_00505 NlpC\/P60 family protein\tK13695 nlpC; probable lipoprotein NlpC" }, { "name":"RHO11_07805 purF; (GenBank) amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" }, { "name":"RHO11_11360 gltB; (GenBank) glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"RHO11_09410 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"RHO11_08615 asnB; (GenBank) asparagine synthase B\tK01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]" }, { "name":"RHO11_07520 DJ-1\/PfpI family protein\tK03152 thiJ; protein deglycase [EC:3.5.1.124]" }, { "name":"RHO11_05755 type II CAAX endopeptidase family protein\tK07052 K07052; CAAX protease family protein" }, { "name":"RHO11_07635 pepN; (GenBank) aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"RHO11_05945 prlC; (GenBank) oligopeptidase A\tK01414 prlC; oligopeptidase A [EC:3.4.24.70]" }, { "name":"RHO11_07100 ptrA; (GenBank) pitrilysin\tK01407 ptrA; protease III [EC:3.4.24.55]" }, { "name":"RHO11_02145 leucyl aminopeptidase\tK01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]" }, { "name":"RHO11_09080 pepB; (GenBank) aminopeptidase PepB\tK07751 pepB; PepB aminopeptidase [EC:3.4.11.23]" }, { "name":"RHO11_04175 dapE; (GenBank) succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"RHO11_02560 pepT; (GenBank) peptidase T\tK01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]" }, { "name":"RHO11_00990 aminoacyl-histidine dipeptidase\tK01270 pepD; dipeptidase D [EC:3.4.13.-]" }, { "name":"RHO11_12900 M20 aminoacylase family protein\tK01451 hipO; hippurate hydrolase [EC:3.5.1.32]" }, { "name":"RHO11_01295 allC; (GenBank) allantoate deiminase\tK02083 allC; allantoate deiminase [EC:3.5.3.9]" }, { "name":"RHO11_11735 mepM; (GenBank) murein DD-endopeptidase MepM\tK19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]" }, { "name":"RHO11_05655 map; (GenBank) type I methionyl aminopeptidase\tK01265 map; methionyl aminopeptidase [EC:3.4.11.18]" }, { "name":"RHO11_12450 pepP; (GenBank) Xaa-Pro aminopeptidase\tK01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]" }, { "name":"RHO11_11590 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"RHO11_12810 htpX; (GenBank) protease HtpX\tK03799 htpX; heat shock protein HtpX [EC:3.4.24.-]" }, { "name":"RHO11_07080 M48 family metallopeptidase\tK07387 K07387; metalloprotease [EC:3.4.24.-]" }, { "name":"RHO11_05030 M48 family metalloprotease\tK01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]" }, { "name":"RHO11_07885 rseP; (GenBank) RIP metalloprotease RseP\tK11749 rseP; regulator of sigma E protease [EC:3.4.24.-]" }, { "name":"RHO11_07745 Do family serine endopeptidase\tK04772 degQ; serine protease DegQ [EC:3.4.21.-]" }, { "name":"RHO11_07750 degS; (GenBank) outer membrane-stress sensor serine endopeptidase DegS\tK04691 hhoB; serine protease DegS [EC:3.4.21.-]" }, { "name":"RHO11_09515 serine hydrolase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"RHO11_09935 dacB; (GenBank) serine-type D-Ala-D-Ala carboxypeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"RHO11_07860 clpP; (GenBank) ATP-dependent Clp endopeptidase proteolytic subunit ClpP\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"RHO11_07850 lon; (GenBank) endopeptidase La\tK01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]" }, { "name":"RHO11_05760 Lon protease family protein\tK04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]" }, { "name":"RHO11_06005 lexA; (GenBank) transcriptional repressor LexA\tK01356 lexA; repressor LexA [EC:3.4.21.88]" }, { "name":"RHO11_04455 umuD; (GenBank) translesion error-prone DNA polymerase V autoproteolytic subunit\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]" }, { "name":"RHO11_04895 umuD; (GenBank) translesion error-prone DNA polymerase V autoproteolytic subunit\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]" }, { "name":"RHO11_05195 umuD; (GenBank) translesion error-prone DNA polymerase V autoproteolytic subunit\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]" }, { "name":"RHO11_04565 lepB; (GenBank) signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"RHO11_07705 prc; (GenBank) carboxy terminal-processing peptidase\tK03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]" }, { "name":"RHO11_04230 sppA; (GenBank) signal peptide peptidase SppA\tK04773 sppA; protease IV [EC:3.4.21.-]" }, { "name":"RHO11_09590 sohB; (GenBank) protease SohB\tK04774 sohB; serine protease SohB [EC:3.4.21.-]" }, { "name":"RHO11_01195 glpG; (GenBank) rhomboid family intramembrane serine protease GlpG\tK02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]" }, { "name":"RHO11_12210 hslV; (GenBank) ATP-dependent protease subunit HslV\tK01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]" }, { "name":"RHO11_01020 yegQ; (GenBank) tRNA 5-hydroxyuridine modification protein YegQ\tK08303 prtC; U32 family peptidase [EC:3.4.-.-]" }, { "name":"RHO11_00690 U32 family peptidase\tK24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase" }, { "name":"RHO11_11760 U32 family peptidase\tK24845 ubiV; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]" }, { "name":"RHO11_11765 peptidase U32 family protein\tK24844 ubiU; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]" }, { "name":"RHO11_12660 pmbA; (GenBank) metalloprotease PmbA\tK03592 pmbA; PmbA protein" }, { "name":"RHO11_08405 tldD; (GenBank) metalloprotease TldD\tK03568 tldD; TldD protein" }, { "name":"RHO11_12820 eco; (GenBank) serine protease inhibitor ecotin\tK08276 eco; ecotin" }, { "name":"RHO11_01405 alpha-2-macroglobulin\tK06894 yfhM; alpha-2-macroglobulin" }, { "name":"RHO11_11665 hflC; (GenBank) protease modulator HflC\tK04087 hflC; modulator of FtsH protease HflC" }, { "name":"RHO11_11660 hflK; (GenBank) FtsH protease activity modulator HflK\tK04088 hflK; modulator of FtsH protease HflK" } ] }, { "name":"01003 Glycosyltransferases [BR:omo01003]", "children":[ { "name":"RHO11_09020 mtgA; (GenBank) monofunctional biosynthetic peptidoglycan transglycosylase\tK03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"RHO11_01400 pbpC; (GenBank) penicillin-binding protein 1C\tK05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]" }, { "name":"RHO11_06630 pbpC; (GenBank) peptidoglycan glycosyltransferase PbpC\tK05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]" }, { "name":"RHO11_11745 mrcB; (GenBank) bifunctional glycosyl transferase\/transpeptidase\tK05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]" }, { "name":"RHO11_07420 transglycosylase domain-containing protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"RHO11_09510 mrdB; (GenBank) peptidoglycan glycosyltransferase MrdB\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"RHO11_01435 mdoH; (GenBank) glucans biosynthesis glucosyltransferase MdoH\tK03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]" } ] }, { "name":"01005 Lipopolysaccharide biosynthesis proteins [BR:omo01005]", "children":[ { "name":"RHO11_09680 lpxA; (GenBank) acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase\tK00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]" }, { "name":"RHO11_09685 lpxB; (GenBank) lipid-A-disaccharide synthase\tK00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]" }, { "name":"RHO11_05835 lpxC; (GenBank) UDP-3-O-acyl-N-acetylglucosamine deacetylase\tK02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]" }, { "name":"RHO11_07870 lpxD; (GenBank) UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase\tK02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]" }, { "name":"RHO11_04120 UDP-2,3-diacylglucosamine diphosphatase\tK03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]" }, { "name":"RHO11_05355 lpxK; (GenBank) tetraacyldisaccharide 4'-kinase\tK00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]" }, { "name":"RHO11_07180 Kdo(2)-lipid IV(A) acyltransferase\tK02517 lpxL; Kdo2-lipid IVA lauroyltransferase\/acyltransferase [EC:2.3.1.241 2.3.1.-]" }, { "name":"RHO11_12100 phosphatase PAP2 family protein\tK19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]" }, { "name":"RHO11_06990 waaA; (GenBank) lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase\tK02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]" }, { "name":"RHO11_12535 pagP; (GenBank) lipid IV(A) palmitoyltransferase PagP\tK12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]" }, { "name":"RHO11_08780 eptA; (GenBank) phosphoethanolamine transferase EptA\tK03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]" }, { "name":"RHO11_02050 kdsA; (GenBank) 3-deoxy-8-phosphooctulonate synthase\tK01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]" }, { "name":"RHO11_05345 kdsB; (GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase\tK00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]" }, { "name":"RHO11_08630 KpsF\/GutQ family sugar-phosphate isomerase\tK06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]" }, { "name":"RHO11_13815 rfaC; (GenBank) lipopolysaccharide heptosyltransferase RfaC\tK02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]" }, { "name":"RHO11_13810 rfaF; (GenBank) ADP-heptose--LPS heptosyltransferase RfaF\tK02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]" }, { "name":"RHO11_03070 glycosyltransferase\tK03275 waaO; UDP-glucose:(glucosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]" }, { "name":"RHO11_07670 lpcA; (GenBank) D-sedoheptulose 7-phosphate isomerase\tK03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]" }, { "name":"RHO11_08270 gmhB; (GenBank) D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase\tK03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]" }, { "name":"RHO11_13070 hldE; (GenBank) bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase\/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE\tK03272 gmhC; D-beta-D-heptose 7-phosphate kinase \/ D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]" }, { "name":"RHO11_13805 rfaD; (GenBank) ADP-glyceromanno-heptose 6-epimerase\tK03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]" } ] }, { "name":"01011 Peptidoglycan biosynthesis and degradation proteins [BR:omo01011]", "children":[ { "name":"RHO11_07585 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"RHO11_05815 murB; (GenBank) UDP-N-acetylmuramate dehydrogenase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"RHO11_05860 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase\tK01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]" }, { "name":"RHO11_05875 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"RHO11_05890 murE; (GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"RHO11_05855 D-alanine--D-alanine ligase\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"RHO11_06270 alr; (GenBank) alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"RHO11_12405 murI; (GenBank) glutamate racemase\tK01776 murI; glutamate racemase [EC:5.1.1.3]" }, { "name":"RHO11_05880 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"RHO11_05865 murG; (GenBank) undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"RHO11_08775 phosphatase PAP2 family protein\tK19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"RHO11_00335 murJ; (GenBank) murein biosynthesis integral membrane protein MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"RHO11_07420 transglycosylase domain-containing protein\tK05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]" }, { "name":"RHO11_11745 mrcB; (GenBank) bifunctional glycosyl transferase\/transpeptidase\tK05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]" }, { "name":"RHO11_01400 pbpC; (GenBank) penicillin-binding protein 1C\tK05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]" }, { "name":"RHO11_06630 pbpC; (GenBank) peptidoglycan glycosyltransferase PbpC\tK05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]" }, { "name":"RHO11_09505 mrdA; (GenBank) penicillin-binding protein 2\tK05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]" }, { "name":"RHO11_05895 ftsI; (GenBank) peptidoglycan glycosyltransferase FtsI\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"RHO11_09515 serine hydrolase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"RHO11_09935 dacB; (GenBank) serine-type D-Ala-D-Ala carboxypeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"RHO11_09020 mtgA; (GenBank) monofunctional biosynthetic peptidoglycan transglycosylase\tK03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"RHO11_09510 mrdB; (GenBank) peptidoglycan glycosyltransferase MrdB\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"RHO11_11735 mepM; (GenBank) murein DD-endopeptidase MepM\tK19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]" }, { "name":"RHO11_09110 sltY; (GenBank) murein transglycosylase\tK08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]" }, { "name":"RHO11_12480 mltA; (GenBank) murein transglycosylase A\tK08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]" }, { "name":"RHO11_05725 lytic murein transglycosylase\tK08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]" }, { "name":"RHO11_07400 mltC; (GenBank) membrane-bound lytic murein transglycosylase MltC\tK08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]" }, { "name":"RHO11_03595 transglycosylase SLT domain-containing protein\tK08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]" }, { "name":"RHO11_13585 mltF; (GenBank) membrane-bound lytic murein transglycosylase MltF\tK18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]" }, { "name":"RHO11_06265 mltG; (GenBank) endolytic transglycosylase MltG\tK07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]" }, { "name":"RHO11_09165 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"RHO11_06655 ampD; (GenBank) 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD\tK03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]" } ] }, { "name":"01004 Lipid biosynthesis proteins [BR:omo01004]", "children":[ { "name":"RHO11_06815 fabD; (GenBank) ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"RHO11_06820 beta-ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"RHO11_04260 fabB; (GenBank) beta-ketoacyl-ACP synthase I\tK00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]" }, { "name":"RHO11_10480 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]" }, { "name":"RHO11_06800 fabF; (GenBank) beta-ketoacyl-ACP synthase II\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"RHO11_10465 beta-ketoacyl-ACP synthase\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"RHO11_06810 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"RHO11_10470 3-ketoacyl-ACP reductase FabG2\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"RHO11_05765 fabA; (GenBank) bifunctional 3-hydroxydecanoyl-ACP dehydratase\/trans-2-decenoyl-ACP isomerase\tK01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase \/ trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]" }, { "name":"RHO11_09675 fabZ; (GenBank) 3-hydroxyacyl-ACP dehydratase FabZ\tK02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]" }, { "name":"RHO11_02345 trans-2-enoyl-CoA reductase family protein\tK00209 fabV; enoyl-[acyl-carrier protein] reductase \/ trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]" }, { "name":"RHO11_12845 yciA; (GenBank) acyl-CoA thioester hydrolase YciA\tK10806 yciA; acyl-CoA thioesterase [EC:3.1.2.-]" }, { "name":"RHO11_10860 plsB; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsB\tK00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]" }, { "name":"RHO11_06825 plsX; (GenBank) phosphate acyltransferase PlsX\tK03621 plsX; phosphate acyltransferase [EC:2.3.1.274]" }, { "name":"RHO11_12895 plsY; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsY\tK08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]" }, { "name":"RHO11_13795 1-acylglycerol-3-phosphate O-acyltransferase\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" } ] }, { "name":"01008 Polyketide biosynthesis proteins" }, { "name":"01006 Prenyltransferases [BR:omo01006]", "children":[ { "name":"RHO11_06085 ispA; (GenBank) (2E,6E)-farnesyl diphosphate synthase\tK00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]" }, { "name":"RHO11_12440 ispB; (GenBank) octaprenyl diphosphate synthase\tK02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]" }, { "name":"RHO11_07895 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" }, { "name":"RHO11_11645 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA\tK00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]" }, { "name":"RHO11_02490 1,4-dihydroxy-2-naphthoate polyprenyltransferase\tK02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]" }, { "name":"RHO11_10855 ubiA; (GenBank) 4-hydroxybenzoate octaprenyltransferase\tK03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]" } ] }, { "name":"01007 Amino acid related enzymes [BR:omo01007]", "children":[ { "name":"RHO11_08610 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"RHO11_11055 glnS; (GenBank) glutamine--tRNA ligase\tK01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]" }, { "name":"RHO11_11165 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS\tK01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]" }, { "name":"RHO11_08725 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"RHO11_08025 trpS; (GenBank) tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"RHO11_05715 cysS; (GenBank) cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"RHO11_01240 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"RHO11_12500 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"RHO11_13090 ileS; (GenBank) isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"RHO11_02160 valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"RHO11_06570 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"RHO11_09385 lysS; (GenBank) lysine--tRNA ligase\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"RHO11_02920 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"RHO11_07645 asnS; (GenBank) asparagine--tRNA ligase\tK01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]" }, { "name":"RHO11_08745 hisS; (GenBank) histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"RHO11_13695 glyQ; (GenBank) glycine--tRNA ligase subunit alpha\tK01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]" }, { "name":"RHO11_13690 glyS; (GenBank) glycine--tRNA ligase subunit beta\tK01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]" }, { "name":"RHO11_07305 serS; (GenBank) serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"RHO11_09285 proS; (GenBank) proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"RHO11_05505 thrS; (GenBank) threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"RHO11_06755 alaS; (GenBank) alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"RHO11_05485 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"RHO11_05480 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"RHO11_09340 amino acid aminotransferase\tK00813 aspC; aspartate aminotransferase [EC:2.6.1.1]" }, { "name":"RHO11_11535 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"RHO11_12985 amino acid aminotransferase\tK00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]" }, { "name":"RHO11_03665 hisC; (GenBank) histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"RHO11_09615 MalY\/PatB family protein\tK14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]" }, { "name":"RHO11_09650 aspartate aminotransferase family protein\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"RHO11_11345 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"RHO11_05165 diaminobutyrate--2-oxoglutarate transaminase family protein\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"RHO11_03355 hemL; (GenBank) glutamate-1-semialdehyde 2,1-aminomutase\tK01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]" }, { "name":"RHO11_11900 branched-chain amino acid transaminase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"RHO11_04200 serC; (GenBank) 3-phosphoserine\/phosphohydroxythreonine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"RHO11_01290 alanine--glyoxylate aminotransferase family protein\tK00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]" }, { "name":"RHO11_03065 rffA; (GenBank) dTDP-4-amino-4,6-dideoxygalactose transaminase\tK02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]" } ] }, { "name":"00199 Cytochrome P450" }, { "name":"00194 Photosynthesis proteins [BR:omo00194]", "children":[ { "name":"RHO11_08810 F0F1 ATP synthase subunit epsilon\tK02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon" }, { "name":"RHO11_08815 atpD; (GenBank) F0F1 ATP synthase subunit beta\tK02112 ATPF1B; F-type H+\/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]" }, { "name":"RHO11_08820 atpG; (GenBank) F0F1 ATP synthase subunit gamma\tK02115 ATPF1G; F-type H+-transporting ATPase subunit gamma" }, { "name":"RHO11_08825 atpA; (GenBank) F0F1 ATP synthase subunit alpha\tK02111 ATPF1A; F-type H+\/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]" }, { "name":"RHO11_08830 atpH; (GenBank) F0F1 ATP synthase subunit delta\tK02113 ATPF1D; F-type H+-transporting ATPase subunit delta" }, { "name":"RHO11_08835 atpF; (GenBank) F0F1 ATP synthase subunit B\tK02109 ATPF0B; F-type H+-transporting ATPase subunit b" }, { "name":"RHO11_08840 atpE; (GenBank) F0F1 ATP synthase subunit C\tK02110 ATPF0C; F-type H+-transporting ATPase subunit c" }, { "name":"RHO11_08845 atpB; (GenBank) F0F1 ATP synthase subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" } ] } ] }, { "name":"09182 Protein families: genetic information processing", "children":[ { "name":"03000 Transcription factors [BR:omo03000]", "children":[ { "name":"RHO11_01055 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_01630 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_13510 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_10295 helix-turn-helix domain-containing protein\tK02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR" }, { "name":"RHO11_10290 rhaS; (GenBank) HTH-type transcriptional activator RhaS\tK02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS" }, { "name":"RHO11_09100 robA; (GenBank) MDR efflux pump AcrAB transcriptional activator RobA\tK05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator" }, { "name":"RHO11_08190 melR; (GenBank) transcriptional regulator MelR\tK23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein" }, { "name":"RHO11_04405 Ada metal-binding domain-containing protein\tK10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response \/ methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]" }, { "name":"RHO11_09290 methylated-DNA--[protein]-cysteine S-methyltransferase\tK10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response \/ methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]" }, { "name":"RHO11_05145 ilvY; (GenBank) HTH-type transcriptional activator IlvY\tK02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC" }, { "name":"RHO11_12640 oxyR; (GenBank) DNA-binding transcriptional regulator OxyR\tK04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator" }, { "name":"RHO11_09065 LysR family transcriptional regulator ArgP\tK05596 argP; LysR family transcriptional regulator, arginine and lysine transport system\/DNA replication regulator" }, { "name":"RHO11_09475 LysR substrate-binding domain-containing protein\tK07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator" }, { "name":"RHO11_01315 allS; (GenBank) HTH-type transcriptional activator AllS\tK10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon" }, { "name":"RHO11_02985 LysR substrate-binding domain-containing protein\tK13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator" }, { "name":"RHO11_00300 LysR substrate-binding domain-containing protein\tK13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator" }, { "name":"RHO11_05960 deoR; (GenBank) DNA-binding transcriptional repressor DeoR\tK11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor" }, { "name":"RHO11_08125 DeoR\/GlpR family DNA-binding transcription regulator\tK02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor" }, { "name":"RHO11_03460 DeoR\/GlpR family DNA-binding transcription regulator\tK03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor" }, { "name":"RHO11_10560 DeoR\/GlpR family DNA-binding transcription regulator\tK03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor" }, { "name":"RHO11_07035 DNA-binding transcriptional repressor\tK02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor" }, { "name":"RHO11_00645 ulaR; (GenBank) HTH-type transcriptional regulator UlaR\tK03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor" }, { "name":"RHO11_12615 DeoR\/GlpR family DNA-binding transcription regulator\tK22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator" }, { "name":"RHO11_10660 DeoR\/GlpR family DNA-binding transcription regulator\tK27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor" }, { "name":"RHO11_02290 rbsR; (GenBank) ribose operon transcriptional repressor RbsR\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor" }, { "name":"RHO11_02755 LacI family DNA-binding transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor" }, { "name":"RHO11_08900 substrate-binding domain-containing protein\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor" }, { "name":"RHO11_13140 LacI family DNA-binding transcriptional regulator\tK02525 kdgR; LacI family transcriptional regulator, kdg operon repressor" }, { "name":"RHO11_11770 LacI family DNA-binding transcriptional regulator\tK05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG" }, { "name":"RHO11_00260 cra; (GenBank) catabolite repressor\/activator\tK03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor" }, { "name":"RHO11_02485 LacI family DNA-binding transcriptional regulator\tK03485 treR; LacI family transcriptional regulator, trehalose operon repressor" }, { "name":"RHO11_08875 gntR; (GenBank) gluconate operon transcriptional repressor GntR\tK06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor" }, { "name":"RHO11_09985 gntR; (GenBank) gluconate operon transcriptional repressor GntR\tK06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor" }, { "name":"RHO11_08060 substrate-binding domain-containing protein\tK06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator" }, { "name":"RHO11_09625 malI; (GenBank) Mal regulon transcriptional regulator MalI\tK16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein" }, { "name":"RHO11_13765 GntR family transcriptional regulator\tK13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor" }, { "name":"RHO11_02605 exuR; (GenBank) transcriptional regulator ExuR\tK19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor" }, { "name":"RHO11_08315 GntR family transcriptional regulator\tK23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism" }, { "name":"RHO11_08355 slmA; (GenBank) nucleoid occlusion factor SlmA\tK05501 slmA; TetR\/AcrR family transcriptional regulator" }, { "name":"RHO11_12645 fabR; (GenBank) HTH-type transcriptional repressor FabR\tK22105 fabR; TetR\/AcrR family transcriptional regulator, fatty acid biosynthesis regulator" }, { "name":"RHO11_03705 AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"RHO11_11370 LuxR family transcriptional regulator\tK19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR" }, { "name":"RHO11_12855 fur; (GenBank) ferric iron uptake transcriptional regulator\tK03711 fur; Fur family transcriptional regulator, ferric uptake regulator" }, { "name":"RHO11_13120 zur; (GenBank) zinc uptake transcriptional repressor Zur\tK09823 zur; Fur family transcriptional regulator, zinc uptake regulator" }, { "name":"RHO11_06490 IclR family transcriptional regulator\tK19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor" }, { "name":"RHO11_10840 kdgR; (GenBank) DNA-binding transcriptional regulator KdgR\tK19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor" }, { "name":"RHO11_11875 IclR family transcriptional regulator\tK19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor" }, { "name":"RHO11_03530 IclR family transcriptional regulator\tK21602 plaR; IclR family transcriptional regulator, regulator of plant utilization" }, { "name":"RHO11_07900 crp; (GenBank) cAMP-activated global transcriptional regulator CRP\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"RHO11_02180 cyclic nucleotide-binding domain-containing protein\tK01420 fnr; CRP\/FNR family transcriptional regulator, anaerobic regulatory protein" }, { "name":"RHO11_11830 iscR; (GenBank) Fe-S cluster assembly transcriptional regulator IscR\tK13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor" }, { "name":"RHO11_04655 nsrR; (GenBank) nitric oxide-sensing transcriptional repressor NsrR\tK13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor" }, { "name":"RHO11_12970 SIS domain-containing protein\tK15835 murR; RpiR family transcriptional regulator, murPQ operon repressor" }, { "name":"RHO11_05805 birA; (GenBank) bifunctional biotin--[acetyl-CoA-carboxylase] ligase\/biotin operon repressor BirA\tK03524 birA; BirA family transcriptional regulator, biotin operon repressor \/ biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]" }, { "name":"RHO11_05455 fis; (GenBank) DNA-binding transcriptional regulator Fis\tK03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein" }, { "name":"RHO11_09105 trpR; (GenBank) trp operon repressor\tK03720 trpR; TrpR family transcriptional regulator, trp operon repressor" }, { "name":"RHO11_00480 helix-turn-helix domain-containing protein\tK07724 ner; Ner family transcriptional regulator" }, { "name":"RHO11_07720 helix-turn-helix transcriptional regulator\tK07724 ner; Ner family transcriptional regulator" }, { "name":"RHO11_13040 nadR; (GenBank) multifunctional transcriptional regulator\/nicotinamide-nucleotide adenylyltransferase\/ribosylnicotinamide kinase NadR\tK06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]" }, { "name":"RHO11_13620 nadR; (GenBank) multifunctional transcriptional regulator\/nicotinamide-nucleotide adenylyltransferase\/ribosylnicotinamide kinase NadR\tK06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]" }, { "name":"RHO11_08055 sugar diacid recognition domain-containing protein\tK02647 cdaR; carbohydrate diacid regulator" }, { "name":"RHO11_06335 TOBE domain-containing protein\tK02019 modE; molybdate transport system regulatory protein" }, { "name":"RHO11_07760 metJ; (GenBank) met regulon transcriptional regulator MetJ\tK03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor" }, { "name":"RHO11_04865 type II toxin-antitoxin system RelB\/DinJ family antitoxin\tK18918 relB; RHH-type transcriptional regulator, rel operon repressor \/ antitoxin RelB" }, { "name":"RHO11_00965 PRD domain-containing protein\tK03488 licT; beta-glucoside operon transcriptional antiterminator" }, { "name":"RHO11_04665 BglG family transcription antiterminator\tK03491 licR; probable licABCH operon transcriptional regulator" }, { "name":"RHO11_12240 argR; (GenBank) transcriptional regulator ArgR\tK03402 argR; transcriptional regulator of arginine metabolism" }, { "name":"RHO11_09175 ROK family protein\tK02565 nagC; N-acetylglucosamine repressor" }, { "name":"RHO11_08425 MltR family transcriptional regulator\tK02562 mtlR; mannitol operon repressor" }, { "name":"RHO11_03085 sigma 54-interacting transcriptional regulator\tK03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport" }, { "name":"RHO11_03210 AlpA family transcriptional regulator\tK07733 alpA; prophage regulatory protein" }, { "name":"RHO11_05290 AlpA family transcriptional regulator\tK07733 alpA; prophage regulatory protein" }, { "name":"RHO11_07445 AlpA family transcriptional regulator\tK07733 alpA; prophage regulatory protein" }, { "name":"RHO11_09860 hypothetical protein\tK07733 alpA; prophage regulatory protein" }, { "name":"RHO11_00765 YqgE\/AlgH family protein\tK07735 algH; putative transcriptional regulator" }, { "name":"RHO11_11160 dksA; (GenBank) RNA polymerase-binding protein DksA\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"RHO11_11270 nrdR; (GenBank) transcriptional regulator NrdR\tK07738 nrdR; transcriptional repressor NrdR" }, { "name":"RHO11_10415 rtcR; (GenBank) RNA repair transcriptional activator RtcR\tK14414 rtcR; transcriptional regulatory protein RtcR" }, { "name":"RHO11_13235 Cro\/CI family transcriptional regulator\tK22302 dicC; transcriptional repressor of cell division inhibition gene dicB" }, { "name":"RHO11_05910 mraZ; (GenBank) division\/cell wall cluster transcriptional repressor MraZ\tK03925 mraZ; transcriptional regulator MraZ" } ] }, { "name":"03021 Transcription machinery [BR:omo03021]", "children":[ { "name":"RHO11_10165 rpoA; (GenBank) DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"RHO11_07915 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"RHO11_07910 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"RHO11_12705 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" }, { "name":"RHO11_12355 rpoD; (GenBank) RNA polymerase sigma factor RpoD\tK03086 rpoD; RNA polymerase primary sigma factor" }, { "name":"RHO11_04585 rpoE; (GenBank) RNA polymerase sigma factor RpoE\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"RHO11_09240 rpoH; (GenBank) RNA polymerase sigma factor RpoH\tK03089 rpoH; RNA polymerase sigma-32 factor" }, { "name":"RHO11_10920 RNA polymerase factor sigma-54\tK03092 rpoN; RNA polymerase sigma-54 factor" }, { "name":"RHO11_12280 nusA; (GenBank) transcription termination factor NusA\tK02600 nusA; transcription termination\/antitermination protein NusA" }, { "name":"RHO11_13030 nusB; (GenBank) transcription antitermination factor NusB\tK03625 nusB; transcription antitermination protein NusB" }, { "name":"RHO11_11100 nusG; (GenBank) transcription termination\/antitermination protein NusG\tK02601 nusG; transcription termination\/antitermination protein NusG" }, { "name":"RHO11_05100 glutathione S-transferase N-terminal domain-containing protein\tK03599 sspA; stringent starvation protein A" }, { "name":"RHO11_05095 ClpXP protease specificity-enhancing factor\tK03600 sspB; stringent starvation protein B" }, { "name":"RHO11_04580 RseA family anti-sigma factor\tK03597 rseA; sigma-E factor negative regulatory protein RseA" }, { "name":"RHO11_04575 MucB\/RseB C-terminal domain-containing protein\tK03598 rseB; sigma-E factor negative regulatory protein RseB" }, { "name":"RHO11_11160 dksA; (GenBank) RNA polymerase-binding protein DksA\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"RHO11_11575 greA; (GenBank) transcription elongation factor GreA\tK03624 greA; transcription elongation factor GreA" }, { "name":"RHO11_05825 greB; (GenBank) transcription elongation factor GreB\tK04760 greB; transcription elongation factor GreB" }, { "name":"RHO11_03565 rho; (GenBank) transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" } ] }, { "name":"03019 Messenger RNA biogenesis [BR:omo03019]", "children":[ { "name":"RHO11_11175 rne; (GenBank) ribonuclease E\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"RHO11_08400 rng; (GenBank) ribonuclease G\tK08301 rng; ribonuclease G [EC:3.1.26.-]" }, { "name":"RHO11_04560 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"RHO11_07780 rnr; (GenBank) ribonuclease R\tK12573 rnr; ribonuclease R [EC:3.1.13.1]" }, { "name":"RHO11_06985 orn; (GenBank) oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" }, { "name":"RHO11_00245 rhlB; (GenBank) ATP-dependent RNA helicase RhlB\tK03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]" }, { "name":"RHO11_00415 DEAD\/DEAH box helicase\tK11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]" }, { "name":"RHO11_00585 DEAD\/DEAH family ATP-dependent RNA helicase\tK05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]" }, { "name":"RHO11_02815 recQ; (GenBank) DNA helicase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"RHO11_05105 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"RHO11_00575 pnp; (GenBank) polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"RHO11_03565 rho; (GenBank) transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" }, { "name":"RHO11_08600 pfkA; (GenBank) 6-phosphofructokinase\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"RHO11_08910 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"RHO11_10780 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"RHO11_11650 hfq; (GenBank) RNA chaperone Hfq\tK03666 hfq; host factor-I protein" }, { "name":"RHO11_02205 ppk1; (GenBank) polyphosphate kinase 1\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"RHO11_04205 pcnB; (GenBank) polynucleotide adenylyltransferase PcnB\tK00970 pcnB; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"RHO11_06875 rppH; (GenBank) RNA pyrophosphohydrolase\tK08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]" }, { "name":"RHO11_06750 csrA; (GenBank) carbon storage regulator CsrA\tK03563 csrA; carbon storage regulator" }, { "name":"RHO11_11265 rraA; (GenBank) ribonuclease E activity regulator RraA\tK02553 rraA; regulator of ribonuclease activity A" }, { "name":"RHO11_02070 rraB; (GenBank) ribonuclease E inhibitor RraB\tK09893 rraB; regulator of ribonuclease activity B" }, { "name":"RHO11_10915 rapZ; (GenBank) RNase adapter RapZ\tK06958 rapZ; RNase adapter protein RapZ" }, { "name":"RHO11_02190 hrpA; (GenBank) ATP-dependent RNA helicase HrpA\tK03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]" } ] }, { "name":"03041 Spliceosome" }, { "name":"03011 Ribosome [BR:omo03011]", "children":[ { "name":"RHO11_05440 rpsA; (GenBank) 30S ribosomal protein S1\tK02945 RP-S1; small subunit ribosomal protein S1" }, { "name":"RHO11_09275 rpsB; (GenBank) 30S ribosomal protein S2\tK02967 RP-S2; small subunit ribosomal protein S2" }, { "name":"RHO11_10070 rpsC; (GenBank) 30S ribosomal protein S3\tK02982 RP-S3; small subunit ribosomal protein S3" }, { "name":"RHO11_10160 rpsD; (GenBank) 30S ribosomal protein S4\tK02986 RP-S4; small subunit ribosomal protein S4" }, { "name":"RHO11_10125 rpsE; (GenBank) 30S ribosomal protein S5\tK02988 RP-S5; small subunit ribosomal protein S5" }, { "name":"RHO11_13550 rpsF; (GenBank) 30S ribosomal protein S6\tK02990 RP-S6; small subunit ribosomal protein S6" }, { "name":"RHO11_11245 rpsG; (GenBank) 30S ribosomal protein S7\tK02992 RP-S7; small subunit ribosomal protein S7" }, { "name":"RHO11_10110 rpsH; (GenBank) 30S ribosomal protein S8\tK02994 RP-S8; small subunit ribosomal protein S8" }, { "name":"RHO11_11925 rpsI; (GenBank) 30S ribosomal protein S9\tK02996 RP-S9; small subunit ribosomal protein S9" }, { "name":"RHO11_10035 rpsJ; (GenBank) 30S ribosomal protein S10\tK02946 RP-S10; small subunit ribosomal protein S10" }, { "name":"RHO11_10155 rpsK; (GenBank) 30S ribosomal protein S11\tK02948 RP-S11; small subunit ribosomal protein S11" }, { "name":"RHO11_11240 rpsL; (GenBank) 30S ribosomal protein S12\tK02950 RP-S12; small subunit ribosomal protein S12" }, { "name":"RHO11_10150 rpsM; (GenBank) 30S ribosomal protein S13\tK02952 RP-S13; small subunit ribosomal protein S13" }, { "name":"RHO11_10105 rpsN; (GenBank) 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"RHO11_06600 rpsO; (GenBank) 30S ribosomal protein S15\tK02956 RP-S15; small subunit ribosomal protein S15" }, { "name":"RHO11_05700 rpsP; (GenBank) 30S ribosomal protein S16\tK02959 RP-S16; small subunit ribosomal protein S16" }, { "name":"RHO11_10085 rpsQ; (GenBank) 30S ribosomal protein S17\tK02961 RP-S17; small subunit ribosomal protein S17" }, { "name":"RHO11_13560 rpsR; (GenBank) 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"RHO11_10060 rpsS; (GenBank) 30S ribosomal protein S19\tK02965 RP-S19; small subunit ribosomal protein S19" }, { "name":"RHO11_08450 rpsT; (GenBank) 30S ribosomal protein S20\tK02968 RP-S20; small subunit ribosomal protein S20" }, { "name":"RHO11_12365 rpsU; (GenBank) 30S ribosomal protein S21\tK02970 RP-S21; small subunit ribosomal protein S21" }, { "name":"RHO11_07930 rplA; (GenBank) 50S ribosomal protein L1\tK02863 RP-L1; large subunit ribosomal protein L1" }, { "name":"RHO11_10055 rplB; (GenBank) 50S ribosomal protein L2\tK02886 RP-L2; large subunit ribosomal protein L2" }, { "name":"RHO11_10040 rplC; (GenBank) 50S ribosomal protein L3\tK02906 RP-L3; large subunit ribosomal protein L3" }, { "name":"RHO11_10045 rplD; (GenBank) 50S ribosomal protein L4\tK02926 RP-L4; large subunit ribosomal protein L4" }, { "name":"RHO11_10100 rplE; (GenBank) 50S ribosomal protein L5\tK02931 RP-L5; large subunit ribosomal protein L5" }, { "name":"RHO11_10115 rplF; (GenBank) 50S ribosomal protein L6\tK02933 RP-L6; large subunit ribosomal protein L6" }, { "name":"RHO11_13565 rplI; (GenBank) 50S ribosomal protein L9\tK02939 RP-L9; large subunit ribosomal protein L9" }, { "name":"RHO11_07925 rplJ; (GenBank) 50S ribosomal protein L10\tK02864 RP-L10; large subunit ribosomal protein L10" }, { "name":"RHO11_07935 rplK; (GenBank) 50S ribosomal protein L11\tK02867 RP-L11; large subunit ribosomal protein L11" }, { "name":"RHO11_07920 rplL; (GenBank) 50S ribosomal protein L7\/L12\tK02935 RP-L7; large subunit ribosomal protein L7\/L12" }, { "name":"RHO11_11920 rplM; (GenBank) 50S ribosomal protein L13\tK02871 RP-L13; large subunit ribosomal protein L13" }, { "name":"RHO11_10090 rplN; (GenBank) 50S ribosomal protein L14\tK02874 RP-L14; large subunit ribosomal protein L14" }, { "name":"RHO11_10135 rplO; (GenBank) 50S ribosomal protein L15\tK02876 RP-L15; large subunit ribosomal protein L15" }, { "name":"RHO11_10075 rplP; (GenBank) 50S ribosomal protein L16\tK02878 RP-L16; large subunit ribosomal protein L16" }, { "name":"RHO11_10170 rplQ; (GenBank) 50S ribosomal protein L17\tK02879 RP-L17; large subunit ribosomal protein L17" }, { "name":"RHO11_10120 rplR; (GenBank) 50S ribosomal protein L18\tK02881 RP-L18; large subunit ribosomal protein L18" }, { "name":"RHO11_05685 rplS; (GenBank) 50S ribosomal protein L19\tK02884 RP-L19; large subunit ribosomal protein L19" }, { "name":"RHO11_05490 rplT; (GenBank) 50S ribosomal protein L20\tK02887 RP-L20; large subunit ribosomal protein L20" }, { "name":"RHO11_08685 rplU; (GenBank) 50S ribosomal protein L21\tK02888 RP-L21; large subunit ribosomal protein L21" }, { "name":"RHO11_10065 rplV; (GenBank) 50S ribosomal protein L22\tK02890 RP-L22; large subunit ribosomal protein L22" }, { "name":"RHO11_10050 rplW; (GenBank) 50S ribosomal protein L23\tK02892 RP-L23; large subunit ribosomal protein L23" }, { "name":"RHO11_10095 rplX; (GenBank) 50S ribosomal protein L24\tK02895 RP-L24; large subunit ribosomal protein L24" }, { "name":"RHO11_08690 rpmA; (GenBank) 50S ribosomal protein L27\tK02899 RP-L27; large subunit ribosomal protein L27" }, { "name":"RHO11_10865 rpmB; (GenBank) 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"RHO11_10080 rpmC; (GenBank) 50S ribosomal protein L29\tK02904 RP-L29; large subunit ribosomal protein L29" }, { "name":"RHO11_10130 rpmD; (GenBank) 50S ribosomal protein L30\tK02907 RP-L30; large subunit ribosomal protein L30" }, { "name":"RHO11_07755 rpmE; (GenBank) 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"RHO11_06830 rpmF; (GenBank) 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"RHO11_10870 rpmG; (GenBank) 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"RHO11_12215 rpmH; (GenBank) 50S ribosomal protein L34\tK02914 RP-L34; large subunit ribosomal protein L34" }, { "name":"RHO11_05495 rpmI; (GenBank) 50S ribosomal protein L35\tK02916 RP-L35; large subunit ribosomal protein L35" }, { "name":"RHO11_10145 rpmJ; (GenBank) 50S ribosomal protein L36\tK02919 RP-L36; large subunit ribosomal protein L36" }, { "name":"RHO11_06110 rplY; (GenBank) 50S ribosomal protein L25\tK02897 RP-L25; large subunit ribosomal protein L25" }, { "name":"RHO11_06880 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_08250 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_11695 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_12425 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_12430 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" } ] }, { "name":"03009 Ribosome biogenesis [BR:omo03009]", "children":[ { "name":"RHO11_04560 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"RHO11_06985 orn; (GenBank) oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" }, { "name":"RHO11_04555 era; (GenBank) GTPase Era\tK03595 era; GTPase" }, { "name":"RHO11_08700 cgtA; (GenBank) Obg family GTPase CgtA\tK03979 obgE; GTPase [EC:3.6.5.-]" }, { "name":"RHO11_11160 dksA; (GenBank) RNA polymerase-binding protein DksA\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"RHO11_12280 nusA; (GenBank) transcription termination factor NusA\tK02600 nusA; transcription termination\/antitermination protein NusA" }, { "name":"RHO11_13030 nusB; (GenBank) transcription antitermination factor NusB\tK03625 nusB; transcription antitermination protein NusB" }, { "name":"RHO11_11100 nusG; (GenBank) transcription termination\/antitermination protein NusG\tK02601 nusG; transcription termination\/antitermination protein NusG" }, { "name":"RHO11_05920 rsuA; (GenBank) 16S rRNA pseudouridine(516) synthase RsuA\tK06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]" }, { "name":"RHO11_04220 rsmA; (GenBank) 16S rRNA (adenine(1518)-N(6)\/adenine(1519)-N(6))-dimethyltransferase RsmA\tK02528 ksgA; 16S rRNA (adenine1518-N6\/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]" }, { "name":"RHO11_09965 rsmB; (GenBank) 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB\tK03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]" }, { "name":"RHO11_03955 rsmC; (GenBank) 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC\tK00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]" }, { "name":"RHO11_07425 rsmD; (GenBank) 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD\tK08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]" }, { "name":"RHO11_00780 rsmE; (GenBank) 16S rRNA (uracil(1498)-N(3))-methyltransferase\tK09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]" }, { "name":"RHO11_08985 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG\tK03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]" }, { "name":"RHO11_05905 rsmH; (GenBank) 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH\tK03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]" }, { "name":"RHO11_03475 rsmI; (GenBank) 16S rRNA (cytidine(1402)-2'-O)-methyltransferase\tK07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]" }, { "name":"RHO11_05940 class I SAM-dependent methyltransferase\tK15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]" }, { "name":"RHO11_07775 rlmB; (GenBank) 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB\tK03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]" }, { "name":"RHO11_11585 rlmE; (GenBank) 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE\tK02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]" }, { "name":"RHO11_03400 rlmF; (GenBank) 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF\tK06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]" }, { "name":"RHO11_04270 rlmH; (GenBank) 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH\tK00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]" }, { "name":"RHO11_06705 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ\tK07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]" }, { "name":"RHO11_00680 rlmKL; (GenBank) bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK\/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL\tK12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase \/ 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]" }, { "name":"RHO11_06860 rlmM; (GenBank) 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM\tK06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]" }, { "name":"RHO11_08230 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG\/ribosomal RNA large subunit methyltransferase RlmN\tK06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]" }, { "name":"RHO11_08505 rlmD; (GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD\tK03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]" }, { "name":"RHO11_03615 rlmC; (GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC\tK03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]" }, { "name":"RHO11_05055 rluA; (GenBank) bifunctional tRNA pseudouridine(32) synthase\/23S rRNA pseudouridine(746) synthase RluA\tK06177 rluA; tRNA pseudouridine32 synthase \/ 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]" }, { "name":"RHO11_02085 rluB; (GenBank) 23S rRNA pseudouridine(2605) synthase RluB\tK06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]" }, { "name":"RHO11_05045 rluC; (GenBank) 23S rRNA pseudouridine(955\/2504\/2580) synthase RluC\tK06179 rluC; 23S rRNA pseudouridine955\/2504\/2580 synthase [EC:5.4.99.24]" }, { "name":"RHO11_12075 rluD; (GenBank) 23S rRNA pseudouridine(1911\/1915\/1917) synthase RluD\tK06180 rluD; 23S rRNA pseudouridine1911\/1915\/1917 synthase [EC:5.4.99.23]" }, { "name":"RHO11_09215 pseudouridine synthase\tK06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]" }, { "name":"RHO11_13035 TrmH family RNA methyltransferase\tK03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]" }, { "name":"RHO11_03965 rimI; (GenBank) ribosomal protein S18-alanine N-acetyltransferase\tK03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase \/ [ribosomal protein L31]-L-lysine N-acetyltransferase [EC:2.3.1.266 2.3.1.338]" }, { "name":"RHO11_05695 rimM; (GenBank) ribosome maturation factor RimM\tK02860 rimM; 16S rRNA processing protein RimM" }, { "name":"RHO11_01105 rimO; (GenBank) 30S ribosomal protein S12 methylthiotransferase RimO\tK14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]" }, { "name":"RHO11_06700 ycaO; (GenBank) 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO\tK09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor" }, { "name":"RHO11_12165 prmA; (GenBank) 50S ribosomal protein L11 methyltransferase\tK02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]" }, { "name":"RHO11_00105 prmB; (GenBank) 50S ribosomal protein L3 N(5)-glutamine methyltransferase\tK07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]" }, { "name":"RHO11_04075 cupin domain-containing protein\tK18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]" }, { "name":"RHO11_11175 rne; (GenBank) ribonuclease E\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"RHO11_08400 rng; (GenBank) ribonuclease G\tK08301 rng; ribonuclease G [EC:3.1.26.-]" }, { "name":"RHO11_00760 ruvX; (GenBank) Holliday junction resolvase RuvX\tK07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]" }, { "name":"RHO11_02335 dbpA; (GenBank) ATP-dependent RNA helicase DbpA\tK05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]" }, { "name":"RHO11_00585 DEAD\/DEAH family ATP-dependent RNA helicase\tK05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]" }, { "name":"RHO11_01115 srmB; (GenBank) ATP-dependent RNA helicase SrmB\tK05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]" }, { "name":"RHO11_07730 rsgA; (GenBank) small ribosomal subunit biogenesis GTPase RsgA\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"RHO11_08760 der; (GenBank) ribosome biogenesis GTPase Der\tK03977 engA; GTPase" }, { "name":"RHO11_11655 hflX; (GenBank) ribosome rescue GTPase HflX\tK03665 hflX; GTPase" }, { "name":"RHO11_08950 Sua5\/YciO\/YrdC\/YwlC family protein\tK07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]" }, { "name":"RHO11_12700 spoT; (GenBank) bifunctional GTP diphosphokinase\/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase\tK01139 spoT; GTP diphosphokinase \/ guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]" }, { "name":"RHO11_12290 rbfA; (GenBank) 30S ribosome-binding factor RbfA\tK02834 rbfA; ribosome-binding factor A" }, { "name":"RHO11_12275 rimP; (GenBank) ribosome maturation factor RimP\tK09748 rimP; ribosome maturation factor RimP" }, { "name":"RHO11_04265 rsfS; (GenBank) ribosome silencing factor\tK09710 ybeB; ribosome-associated protein" }, { "name":"RHO11_04275 ybeY; (GenBank) rRNA maturation RNase YbeY\tK07042 ybeY; probable rRNA maturation factor" }, { "name":"RHO11_11580 yhbY; (GenBank) ribosome assembly RNA-binding protein YhbY\tK07574 yhbY; RNA-binding protein" }, { "name":"RHO11_12655 yjgA; (GenBank) ribosome biogenesis factor YjgA\tK09889 yjgA; ribosome-associated protein" }, { "name":"RHO11_06620 raiA; (GenBank) ribosome-associated translation inhibitor RaiA\tK05809 raiA; ribosome-associated inhibitor A" }, { "name":"RHO11_00840 ychF; (GenBank) redox-regulated ATPase YchF\tK06942 ychF; ribosome-binding ATPase" }, { "name":"RHO11_06835 yceD; (GenBank) 23S rRNA accumulation protein YceD\tK07040 yceD; DUF177 domain-containing protein" } ] }, { "name":"03016 Transfer RNA biogenesis [BR:omo03016]", "children":[ { "name":"RHO11_05635 rnz; (GenBank) ribonuclease Z\tK00784 rnz; ribonuclease Z [EC:3.1.26.11]" }, { "name":"RHO11_06390 multifunctional CCA addition\/repair protein\tK00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]" }, { "name":"RHO11_10400 RtcB family protein\tK14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate\/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]" }, { "name":"RHO11_08610 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"RHO11_09285 proS; (GenBank) proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"RHO11_13090 ileS; (GenBank) isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"RHO11_06570 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"RHO11_12500 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"RHO11_11055 glnS; (GenBank) glutamine--tRNA ligase\tK01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]" }, { "name":"RHO11_01240 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"RHO11_09385 lysS; (GenBank) lysine--tRNA ligase\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"RHO11_02920 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"RHO11_06755 alaS; (GenBank) alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"RHO11_07645 asnS; (GenBank) asparagine--tRNA ligase\tK01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]" }, { "name":"RHO11_05505 thrS; (GenBank) threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"RHO11_07305 serS; (GenBank) serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"RHO11_05715 cysS; (GenBank) cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"RHO11_02160 valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"RHO11_08745 hisS; (GenBank) histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"RHO11_05485 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"RHO11_05480 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"RHO11_08725 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"RHO11_08025 trpS; (GenBank) tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"RHO11_08435 dtd; (GenBank) D-aminoacyl-tRNA deacylase\tK07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]" }, { "name":"RHO11_03100 HIT domain-containing protein\tK02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]" }, { "name":"RHO11_09495 miaB; (GenBank) tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB\tK06168 CDK5RAP1; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]" }, { "name":"RHO11_05660 trmB; (GenBank) tRNA (guanosine(46)-N7)-methyltransferase TrmB\tK03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]" }, { "name":"RHO11_08290 tsaA; (GenBank) tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO\tK22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]" }, { "name":"RHO11_07830 truA; (GenBank) tRNA pseudouridine(38-40) synthase TruA\tK06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]" }, { "name":"RHO11_12295 truB; (GenBank) tRNA pseudouridine(55) synthase TruB\tK03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]" }, { "name":"RHO11_04330 truD; (GenBank) tRNA pseudouridine(13) synthase TruD\tK06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]" }, { "name":"RHO11_11835 IscS subfamily cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"RHO11_08950 Sua5\/YciO\/YrdC\/YwlC family protein\tK07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]" }, { "name":"RHO11_11645 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA\tK00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]" }, { "name":"RHO11_13715 mnmE; (GenBank) tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE\tK03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]" }, { "name":"RHO11_08990 mnmG; (GenBank) tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG\tK03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme" }, { "name":"RHO11_12220 rnpA; (GenBank) ribonuclease P protein component\tK03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]" }, { "name":"RHO11_02635 rnt; (GenBank) ribonuclease T\tK03683 rnt; ribonuclease T [EC:3.1.13.-]" }, { "name":"RHO11_02615 rph; (GenBank) ribonuclease PH\tK00989 rph; ribonuclease PH [EC:2.7.7.56]" }, { "name":"RHO11_05090 exoribonuclease II\tK01147 rnb; exoribonuclease II [EC:3.1.13.1]" }, { "name":"RHO11_01425 rnd; (GenBank) ribonuclease D\tK03684 rnd; ribonuclease D [EC:3.1.13.5]" }, { "name":"RHO11_09630 ettA; (GenBank) energy-dependent translational throttle protein EttA\tK06020 ettA; energy-dependent translational throttle protein EttA" }, { "name":"RHO11_13695 glyQ; (GenBank) glycine--tRNA ligase subunit alpha\tK01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]" }, { "name":"RHO11_13690 glyS; (GenBank) glycine--tRNA ligase subunit beta\tK01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]" }, { "name":"RHO11_11165 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS\tK01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]" }, { "name":"RHO11_13680 ybaK; (GenBank) Cys-tRNA(Pro) deacylase\tK03976 ybaK; Cys-tRNA(Pro)\/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]" }, { "name":"RHO11_13580 tadA; (GenBank) tRNA adenosine(34) deaminase TadA\tK11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]" }, { "name":"RHO11_07130 dusA; (GenBank) tRNA dihydrouridine(20\/20a) synthase DusA\tK05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]" }, { "name":"RHO11_05450 dusB; (GenBank) tRNA dihydrouridine synthase DusB\tK05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]" }, { "name":"RHO11_02965 dusC; (GenBank) tRNA dihydrouridine(16) synthase DusC\tK05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]" }, { "name":"RHO11_01415 cmoA; (GenBank) carboxy-S-adenosyl-L-methionine synthase CmoA\tK15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]" }, { "name":"RHO11_01410 cmoB; (GenBank) tRNA 5-methoxyuridine(34)\/uridine 5-oxyacetic acid(34) synthase CmoB\tK15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]" }, { "name":"RHO11_13800 cmoM; (GenBank) tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM\tK06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]" }, { "name":"RHO11_07405 trmA; (GenBank) tRNA (uridine(54)-C5)-methyltransferase TrmA\tK00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]" }, { "name":"RHO11_05690 trmD; (GenBank) tRNA (guanosine(37)-N1)-methyltransferase TrmD\tK00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]" }, { "name":"RHO11_13035 TrmH family RNA methyltransferase\tK03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]" }, { "name":"RHO11_13015 trmJ; (GenBank) tRNA (cytosine(32)\/uridine(32)-2'-O)-methyltransferase TrmJ\tK15396 trmJ; tRNA (cytidine32\/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]" }, { "name":"RHO11_08580 trmL; (GenBank) tRNA (uridine(34)\/cytosine(34)\/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL\tK03216 trmL; tRNA (cytidine\/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]" }, { "name":"RHO11_01210 methyltransferase\tK15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]" }, { "name":"RHO11_00720 truC; (GenBank) tRNA pseudouridine(65) synthase TruC\tK06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]" }, { "name":"RHO11_05055 rluA; (GenBank) bifunctional tRNA pseudouridine(32) synthase\/23S rRNA pseudouridine(746) synthase RluA\tK06177 rluA; tRNA pseudouridine32 synthase \/ 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]" }, { "name":"RHO11_00470 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA\tK00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]" }, { "name":"RHO11_12095 ttcA; (GenBank) tRNA 2-thiocytidine(32) synthetase TtcA\tK14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA" }, { "name":"RHO11_12040 tusA; (GenBank) sulfurtransferase TusA\tK04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]" }, { "name":"RHO11_11625 tusB; (GenBank) sulfurtransferase complex subunit TusB\tK07237 tusB; tRNA 2-thiouridine synthesizing protein B" }, { "name":"RHO11_09660 tusC; (GenBank) sulfurtransferase complex subunit TusC\tK07236 tusC; tRNA 2-thiouridine synthesizing protein C" }, { "name":"RHO11_09665 tusD; (GenBank) sulfurtransferase complex subunit TusD\tK07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]" }, { "name":"RHO11_04350 TusE\/DsrC\/DsvC family sulfur relay protein\tK11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]" }, { "name":"RHO11_11845 iscA; (GenBank) iron-sulfur cluster assembly protein IscA\tK13628 iscA; iron-sulfur cluster assembly protein" }, { "name":"RHO11_03525 ygfZ; (GenBank) tRNA-modifying protein YgfZ\tK06980 ygfZ; tRNA-modifying protein YgfZ" }, { "name":"RHO11_13005 miaE; (GenBank) tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE\tK06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]" }, { "name":"RHO11_07075 queA; (GenBank) tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA\tK07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]" }, { "name":"RHO11_05465 queC; (GenBank) 7-cyano-7-deazaguanine synthase QueC\tK06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]" }, { "name":"RHO11_05470 queF; (GenBank) preQ(1) synthase\tK09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]" }, { "name":"RHO11_00745 epoxyqueuosine reductase QueH\tK09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]" }, { "name":"RHO11_07070 tgt; (GenBank) tRNA guanosine(34) transglycosylase Tgt\tK00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]" }, { "name":"RHO11_07515 thiI; (GenBank) tRNA uracil 4-sulfurtransferase ThiI\tK03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]" }, { "name":"RHO11_08850 tilS; (GenBank) tRNA lysidine(34) synthetase TilS\tK04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]" }, { "name":"RHO11_04010 GNAT family N-acetyltransferase\tK06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]" }, { "name":"RHO11_03030 tsaB; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB\tK14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB" }, { "name":"RHO11_06695 tsaD; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD\tK25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]" }, { "name":"RHO11_11630 tsaE; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE\tK06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE" }, { "name":"RHO11_11060 tcdA; (GenBank) tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA\tK22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase" }, { "name":"RHO11_07780 rnr; (GenBank) ribonuclease R\tK12573 rnr; ribonuclease R [EC:3.1.13.1]" }, { "name":"RHO11_00575 pnp; (GenBank) polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" } ] }, { "name":"03012 Translation factors [BR:omo03012]", "children":[ { "name":"RHO11_12750 yciH; (GenBank) stress response translation initiation inhibitor YciH\tK03113 EIF1; translation initiation factor 1" }, { "name":"RHO11_12285 infB; (GenBank) translation initiation factor IF-2\tK02519 infB; translation initiation factor IF-2" }, { "name":"RHO11_05500 infC; (GenBank) translation initiation factor IF-3\tK02520 infC; translation initiation factor IF-3" }, { "name":"RHO11_08040 ABC transporter ATP-binding protein\tK06158 ABCF3; ATP-binding cassette, subfamily F, member 3" }, { "name":"RHO11_09270 tsf; (GenBank) translation elongation factor Ts\tK02357 tsf; elongation factor Ts" }, { "name":"RHO11_11090 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"RHO11_11255 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"RHO11_11250 fusA; (GenBank) elongation factor G\tK02355 fusA; elongation factor G" }, { "name":"RHO11_02040 prfA; (GenBank) peptide chain release factor 1\tK02835 prfA; peptide chain release factor 1" }, { "name":"RHO11_09260 frr; (GenBank) ribosome recycling factor\tK02838 frr; ribosome recycling factor" }, { "name":"RHO11_02045 prmC; (GenBank) peptide chain release factor N(5)-glutamine methyltransferase\tK02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]" }, { "name":"RHO11_13780 pth; (GenBank) aminoacyl-tRNA hydrolase\tK01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]" }, { "name":"RHO11_12120 infA; (GenBank) translation initiation factor IF-1\tK02518 infA; translation initiation factor IF-1" }, { "name":"RHO11_08565 efp; (GenBank) elongation factor P\tK02356 efp; elongation factor P" }, { "name":"RHO11_12105 yeiP; (GenBank) elongation factor P-like protein YeiP\tK02356 efp; elongation factor P" }, { "name":"RHO11_00220 epmA; (GenBank) elongation factor P--(R)-beta-lysine ligase\tK04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]" }, { "name":"RHO11_08560 epmB; (GenBank) EF-P beta-lysylation protein EpmB\tK19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]" }, { "name":"RHO11_04660 elongation factor P hydroxylase\tK09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]" }, { "name":"RHO11_09380 prfB; (GenBank) peptide chain release factor 2\tK02836 prfB; peptide chain release factor 2" }, { "name":"RHO11_07120 prfC; (GenBank) peptide chain release factor 3\tK02837 prfC; peptide chain release factor 3" }, { "name":"RHO11_06960 prfH; (GenBank) peptide chain release factor H\tK02839 prfH; peptide chain release factor" }, { "name":"RHO11_12885 ribosome alternative rescue factor ArfA\tK09890 arfA; alternative ribosome-rescue factor" } ] }, { "name":"03110 Chaperones and folding catalysts [BR:omo03110]", "children":[ { "name":"RHO11_04095 clpA; (GenBank) ATP-dependent Clp protease ATP-binding subunit ClpA\tK03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA" }, { "name":"RHO11_12590 clpB; (GenBank) ATP-dependent chaperone ClpB\tK03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB" }, { "name":"RHO11_07855 clpX; (GenBank) ATP-dependent protease ATP-binding subunit ClpX\tK03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX" }, { "name":"RHO11_12205 hslU; (GenBank) HslU--HslV peptidase ATPase subunit\tK03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU" }, { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" }, { "name":"RHO11_08910 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"RHO11_11855 hscA; (GenBank) Fe-S protein assembly chaperone HscA\tK04044 hscA; molecular chaperone HscA" }, { "name":"RHO11_10780 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"RHO11_08905 dnaJ; (GenBank) molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"RHO11_06945 djlA; (GenBank) co-chaperone DjlA\tK05801 djlA; DnaJ like chaperone protein" }, { "name":"RHO11_11850 hscB; (GenBank) Fe-S protein assembly co-chaperone HscB\tK04082 hscB; molecular chaperone HscB" }, { "name":"RHO11_11560 hslO; (GenBank) Hsp33 family molecular chaperone HslO\tK04083 hslO; molecular chaperone Hsp33" }, { "name":"RHO11_08795 grpE; (GenBank) nucleotide exchange factor GrpE\tK03687 GRPE; molecular chaperone GrpE" }, { "name":"RHO11_11565 hslR; (GenBank) ribosome-associated heat shock protein Hsp15\tK04762 hslR; ribosome-associated heat shock protein Hsp15" }, { "name":"RHO11_10775 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"RHO11_11590 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"RHO11_08845 atpB; (GenBank) F0F1 ATP synthase subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" }, { "name":"RHO11_10260 molecular chaperone\tK07346 fimC; fimbrial chaperone protein" }, { "name":"RHO11_08335 secB; (GenBank) protein-export chaperone SecB\tK03071 secB; preprotein translocase subunit SecB" }, { "name":"RHO11_02510 molecular chaperone\tK23349 dmsD; putative dimethyl sulfoxide reductase chaperone" }, { "name":"RHO11_09085 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" }, { "name":"RHO11_04125 ppiB; (GenBank) peptidylprolyl isomerase B\tK03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]" }, { "name":"RHO11_07845 SurA N-terminal domain-containing protein\tK03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]" }, { "name":"RHO11_09670 fkpA; (GenBank) FKBP-type peptidyl-prolyl cis-trans isomerase\tK03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]" }, { "name":"RHO11_13570 FKBP-type peptidyl-prolyl cis-trans isomerase\tK03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]" }, { "name":"RHO11_10185 slyD; (GenBank) peptidylprolyl isomerase\tK03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]" }, { "name":"RHO11_04215 surA; (GenBank) peptidylprolyl isomerase SurA\tK03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]" }, { "name":"RHO11_00250 trxA; (GenBank) thioredoxin TrxA\tK03671 TXN; thioredoxin" }, { "name":"RHO11_12925 co-chaperone YbbN\tK05838 ybbN; putative thioredoxin" }, { "name":"RHO11_03025 GrxA family glutaredoxin\tK03674 grxA; glutaredoxin 1" }, { "name":"RHO11_04035 grxB; (GenBank) glutaredoxin 2\tK03675 grxB; glutaredoxin 2" }, { "name":"RHO11_02640 Grx4 family monothiol glutaredoxin\tK07390 grxD; monothiol glutaredoxin" }, { "name":"RHO11_09000 DsbA family protein\tK03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]" }, { "name":"RHO11_12935 thiol:disulfide interchange protein DsbA\/DsbL\tK03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]" }, { "name":"RHO11_05050 dsbB; (GenBank) disulfide bond formation protein DsbB\tK03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]" }, { "name":"RHO11_09600 dsbC; (GenBank) bifunctional protein-disulfide isomerase\/oxidoreductase DsbC\tK03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]" } ] }, { "name":"04131 Membrane trafficking [BR:omo04131]", "children":[ { "name":"RHO11_06625 ndk; (GenBank) nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"RHO11_00675 gapA; (GenBank) glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"RHO11_03465 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"RHO11_02200 pykF; (GenBank) pyruvate kinase PykF\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_04070 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" } ] }, { "name":"04121 Ubiquitin system" }, { "name":"03051 Proteasome [BR:omo03051]", "children":[ { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" } ] }, { "name":"03032 DNA replication proteins [BR:omo03032]", "children":[ { "name":"RHO11_03585 rnhA; (GenBank) ribonuclease HI\tK03469 rnhA; ribonuclease HI [EC:3.1.26.4]" }, { "name":"RHO11_01055 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_01630 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_13510 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_09390 HU family DNA-binding protein\tK05787 hupA; DNA-binding protein HU-alpha" }, { "name":"RHO11_05475 integration host factor subunit alpha\tK04764 ihfA; integration host factor subunit alpha" }, { "name":"RHO11_05435 integration host factor subunit beta\tK05788 ihfB; integration host factor subunit beta" }, { "name":"RHO11_11025 dnaA; (GenBank) chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"RHO11_00350 dnaB; (GenBank) replicative DNA helicase\tK02314 dnaB; replicative DNA helicase [EC:5.6.2.3]" }, { "name":"RHO11_12360 dnaG; (GenBank) DNA primase\tK02316 dnaG; DNA primase [EC:2.7.7.101]" }, { "name":"RHO11_01640 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_04605 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_09310 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"RHO11_11020 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"RHO11_02150 DNA polymerase III subunit chi\tK02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]" }, { "name":"RHO11_06580 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"RHO11_12760 DNA polymerase III subunit delta' C-terminal domain-containing protein\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"RHO11_03580 dnaQ; (GenBank) DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"RHO11_00695 dnaX; (GenBank) DNA polymerase III subunit gamma\/tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"RHO11_03960 DNA polymerase III subunit psi\tK02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]" }, { "name":"RHO11_09690 rnhB; (GenBank) ribonuclease HII\tK03470 rnhB; ribonuclease HII [EC:3.1.26.4]" }, { "name":"RHO11_08995 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"RHO11_00390 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"RHO11_08010 Dam family site-specific DNA-(adenine-N6)-methyltransferase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" }, { "name":"RHO11_13195 DNA adenine methylase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" }, { "name":"RHO11_06350 hypothetical protein\tK03645 seqA; negative modulator of initiation of replication" }, { "name":"RHO11_08965 hda; (GenBank) DnaA inactivator Hda\tK10763 hda; DnaA-homolog protein" }, { "name":"RHO11_07270 gyrA; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"RHO11_11010 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"RHO11_06950 parC; (GenBank) DNA topoisomerase IV subunit A\tK02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]" }, { "name":"RHO11_06955 parE; (GenBank) DNA topoisomerase IV subunit B\tK02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]" }, { "name":"RHO11_02990 topA; (GenBank) type I DNA topoisomerase\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]" }, { "name":"RHO11_00885 DNA topoisomerase III\tK03169 topB; DNA topoisomerase III [EC:5.6.2.1]" } ] }, { "name":"03036 Chromosome and associated proteins [BR:omo03036]", "children":[ { "name":"RHO11_01055 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_01630 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_13510 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_04560 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"RHO11_09390 HU family DNA-binding protein\tK05787 hupA; DNA-binding protein HU-alpha" }, { "name":"RHO11_05475 integration host factor subunit alpha\tK04764 ihfA; integration host factor subunit alpha" }, { "name":"RHO11_05435 integration host factor subunit beta\tK05788 ihfB; integration host factor subunit beta" }, { "name":"RHO11_09100 robA; (GenBank) MDR efflux pump AcrAB transcriptional activator RobA\tK05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator" }, { "name":"RHO11_11025 dnaA; (GenBank) chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"RHO11_06845 SIS domain-containing protein\tK12961 diaA; DnaA initiator-associating protein" }, { "name":"RHO11_02275 Dps family protein\tK04047 dps; starvation-inducible DNA-binding protein" }, { "name":"RHO11_09435 DNA starvation\/stationary phase protection protein\tK04047 dps; starvation-inducible DNA-binding protein" }, { "name":"RHO11_05455 fis; (GenBank) DNA-binding transcriptional regulator Fis\tK03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein" }, { "name":"RHO11_11650 hfq; (GenBank) RNA chaperone Hfq\tK03666 hfq; host factor-I protein" }, { "name":"RHO11_09065 LysR family transcriptional regulator ArgP\tK05596 argP; LysR family transcriptional regulator, arginine and lysine transport system\/DNA replication regulator" }, { "name":"RHO11_03705 AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"RHO11_00895 yejK; (GenBank) nucleoid-associated protein YejK\tK06899 ndpA; nucleoid-associated protein" }, { "name":"RHO11_06145 mukB; (GenBank) chromosome partition protein MukB\tK03632 mukB; chromosome partition protein MukB" }, { "name":"RHO11_06150 mukE; (GenBank) chromosome partition protein MukE\tK03804 mukE; chromosome partition protein MukE" }, { "name":"RHO11_06155 mukF; (GenBank) chromosome partition protein MukF\tK03633 mukF; chromosome partition protein MukF" }, { "name":"RHO11_05845 ftsA; (GenBank) cell division protein FtsA\tK03590 ftsA; cell division protein FtsA" }, { "name":"RHO11_04345 ftsB; (GenBank) cell division protein FtsB\tK05589 ftsB; cell division protein FtsB" }, { "name":"RHO11_09230 ftsE; (GenBank) cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"RHO11_05895 ftsI; (GenBank) peptidoglycan glycosyltransferase FtsI\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"RHO11_05900 ftsL; (GenBank) cell division protein FtsL\tK03586 ftsL; cell division protein FtsL" }, { "name":"RHO11_08445 SPOR domain-containing protein\tK03591 ftsN; cell division protein FtsN" }, { "name":"RHO11_05850 FtsQ-type POTRA domain-containing protein\tK03589 ftsQ; cell division protein FtsQ" }, { "name":"RHO11_09235 ftsX; (GenBank) permease-like cell division protein FtsX\tK09811 ftsX; cell division transport system permease protein" }, { "name":"RHO11_05840 ftsZ; (GenBank) cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"RHO11_00385 zipA; (GenBank) cell division protein ZipA\tK03528 zipA; cell division protein ZipA" }, { "name":"RHO11_06095 zapA; (GenBank) cell division protein ZapA\tK09888 zapA; cell division protein ZapA" }, { "name":"RHO11_00490 zapB; (GenBank) cell division protein ZapB\tK09892 zapB; cell division protein ZapB" }, { "name":"RHO11_05135 cell division protein ZapC\tK18657 zapC; cell division protein ZapC" }, { "name":"RHO11_06685 cell division protein ZapD\tK18778 zapD; cell division protein ZapD" }, { "name":"RHO11_09165 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"RHO11_00380 efflux RND transporter periplasmic adaptor subunit\tK03585 acrA; membrane fusion protein, multidrug efflux system" }, { "name":"RHO11_02270 SulA-like leucine-rich domain-containing protein\tK13053 sulA; cell division inhibitor SulA" }, { "name":"RHO11_08355 slmA; (GenBank) nucleoid occlusion factor SlmA\tK05501 slmA; TetR\/AcrR family transcriptional regulator" }, { "name":"RHO11_06350 hypothetical protein\tK03645 seqA; negative modulator of initiation of replication" }, { "name":"RHO11_08385 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"RHO11_08390 mreC; (GenBank) rod shape-determining protein MreC\tK03570 mreC; rod shape-determining protein MreC" }, { "name":"RHO11_08395 mreD; (GenBank) rod shape-determining protein MreD\tK03571 mreD; rod shape-determining protein MreD" }, { "name":"RHO11_09510 mrdB; (GenBank) peptidoglycan glycosyltransferase MrdB\tK05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"RHO11_06950 parC; (GenBank) DNA topoisomerase IV subunit A\tK02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]" }, { "name":"RHO11_06955 parE; (GenBank) DNA topoisomerase IV subunit B\tK02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]" }, { "name":"RHO11_08990 mnmG; (GenBank) tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG\tK03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme" }, { "name":"RHO11_08985 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG\tK03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]" }, { "name":"RHO11_02845 xerC; (GenBank) tyrosine recombinase XerC\tK03733 xerC; integrase\/recombinase XerC" }, { "name":"RHO11_09595 xerD; (GenBank) site-specific tyrosine recombinase XerD\tK04763 xerD; integrase\/recombinase XerD" }, { "name":"RHO11_12505 apbC; (GenBank) iron-sulfur cluster carrier protein ApbC\tK03593 mrp; ATP-binding protein involved in chromosome partitioning" }, { "name":"RHO11_09655 yihA; (GenBank) ribosome biogenesis GTP-binding protein YihA\/YsxC\tK03978 engB; GTP-binding protein" } ] }, { "name":"03400 DNA repair and recombination proteins [BR:omo03400]", "children":[ { "name":"RHO11_13850 methylated-DNA--[protein]-cysteine S-methyltransferase\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]" }, { "name":"RHO11_02350 phrB; (GenBank) deoxyribodipyrimidine photo-lyase\tK01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]" }, { "name":"RHO11_08880 ung; (GenBank) uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"RHO11_07390 mutY; (GenBank) A\/G-specific adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]" }, { "name":"RHO11_08715 nth; (GenBank) endonuclease III\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]" }, { "name":"RHO11_06970 mutT; (GenBank) 8-oxo-dGTP diphosphatase MutT\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]" }, { "name":"RHO11_08360 dut; (GenBank) dUTP diphosphatase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]" }, { "name":"RHO11_04405 Ada metal-binding domain-containing protein\tK10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response \/ methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]" }, { "name":"RHO11_09290 methylated-DNA--[protein]-cysteine S-methyltransferase\tK10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response \/ methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]" }, { "name":"RHO11_13700 DNA-3-methyladenine glycosylase I\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]" }, { "name":"RHO11_07380 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase\/DNA-(apurinic or apyrimidinic site) lyase\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"RHO11_11785 xthA; (GenBank) exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"RHO11_00900 nfo; (GenBank) deoxyribonuclease IV\tK01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]" }, { "name":"RHO11_01205 nfi; (GenBank) deoxyribonuclease V\tK05982 nfi; deoxyribonuclease V [EC:3.1.21.7]" }, { "name":"RHO11_09605 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]" }, { "name":"RHO11_00390 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"RHO11_08995 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"RHO11_12890 uvrA; (GenBank) excinuclease ABC subunit UvrA\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"RHO11_05780 uvrB; (GenBank) excinuclease ABC subunit UvrB\tK03702 uvrB; excinuclease ABC subunit B" }, { "name":"RHO11_03185 uvrC; (GenBank) excinuclease ABC subunit UvrC\tK03703 uvrC; excinuclease ABC subunit C" }, { "name":"RHO11_04445 GIY-YIG nuclease family protein\tK05984 cho; excinuclease Cho [EC:3.1.25.-]" }, { "name":"RHO11_02835 uvrD; (GenBank) DNA helicase II\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"RHO11_07915 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"RHO11_07910 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"RHO11_10165 rpoA; (GenBank) DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"RHO11_12705 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" }, { "name":"RHO11_02235 mfd; (GenBank) transcription-repair coupling factor\tK03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"RHO11_03375 mutS; (GenBank) DNA mismatch repair protein MutS\tK03555 mutS; DNA mismatch repair protein MutS" }, { "name":"RHO11_11640 mutL; (GenBank) DNA mismatch repair endonuclease MutL\tK03572 mutL; DNA mismatch repair protein MutL" }, { "name":"RHO11_09420 mutH; (GenBank) DNA mismatch repair endonuclease MutH\tK03573 mutH; DNA mismatch repair protein MutH" }, { "name":"RHO11_03745 sbcB; (GenBank) exodeoxyribonuclease I\tK01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]" }, { "name":"RHO11_11780 xseA; (GenBank) exodeoxyribonuclease VII large subunit\tK03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]" }, { "name":"RHO11_06080 xseB; (GenBank) exodeoxyribonuclease VII small subunit\tK03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]" }, { "name":"RHO11_09310 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"RHO11_11020 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"RHO11_02150 DNA polymerase III subunit chi\tK02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]" }, { "name":"RHO11_06580 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"RHO11_12760 DNA polymerase III subunit delta' C-terminal domain-containing protein\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"RHO11_03580 dnaQ; (GenBank) DNA polymerase III subunit epsilon\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"RHO11_00695 dnaX; (GenBank) DNA polymerase III subunit gamma\/tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"RHO11_03960 DNA polymerase III subunit psi\tK02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]" }, { "name":"RHO11_01640 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_04605 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_08010 Dam family site-specific DNA-(adenine-N6)-methyltransferase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" }, { "name":"RHO11_13195 DNA adenine methylase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" }, { "name":"RHO11_06040 recB; (GenBank) exodeoxyribonuclease V subunit beta\tK03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]" }, { "name":"RHO11_06795 recC; (GenBank) exodeoxyribonuclease V subunit gamma\tK03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]" }, { "name":"RHO11_04310 recD; (GenBank) exodeoxyribonuclease V subunit alpha\tK03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]" }, { "name":"RHO11_06765 recA; (GenBank) recombinase RecA\tK03553 recA; recombination protein RecA" }, { "name":"RHO11_02885 ruvA; (GenBank) Holliday junction branch migration protein RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA" }, { "name":"RHO11_02880 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]" }, { "name":"RHO11_02895 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]" }, { "name":"RHO11_08465 priA; (GenBank) primosomal protein N'\tK04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"RHO11_13555 priB; (GenBank) primosomal replication protein N\tK02686 priB; primosomal replication protein N" }, { "name":"RHO11_01545 priC; (GenBank) primosomal replication protein PriC\tK04067 priC; primosomal replication protein N''" }, { "name":"RHO11_12465 radA; (GenBank) DNA repair protein RadA\tK04485 radA; DNA repair protein RadA\/Sms" }, { "name":"RHO11_11015 recF; (GenBank) DNA replication\/repair protein RecF\tK03629 recF; DNA replication and repair protein RecF" }, { "name":"RHO11_12695 recG; (GenBank) ATP-dependent DNA helicase RecG\tK03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]" }, { "name":"RHO11_04620 recO; (GenBank) DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)" }, { "name":"RHO11_00710 recR; (GenBank) recombination mediator RecR\tK06187 recR; recombination protein RecR" }, { "name":"RHO11_08370 recN; (GenBank) DNA repair protein RecN\tK03631 recN; DNA repair protein RecN (Recombination protein N)" }, { "name":"RHO11_01650 rdgC; (GenBank) recombination-associated protein RdgC\tK03554 rdgC; recombination associated protein RdgC" }, { "name":"RHO11_11035 recombination-associated protein RdgC\tK03554 rdgC; recombination associated protein RdgC" }, { "name":"RHO11_13210 rdgC; (GenBank) recombination-associated protein RdgC\tK03554 rdgC; recombination associated protein RdgC" }, { "name":"RHO11_07270 gyrA; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"RHO11_11010 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"RHO11_02990 topA; (GenBank) type I DNA topoisomerase\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]" }, { "name":"RHO11_09390 HU family DNA-binding protein\tK05787 hupA; DNA-binding protein HU-alpha" }, { "name":"RHO11_05455 fis; (GenBank) DNA-binding transcriptional regulator Fis\tK03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein" }, { "name":"RHO11_05475 integration host factor subunit alpha\tK04764 ihfA; integration host factor subunit alpha" }, { "name":"RHO11_05435 integration host factor subunit beta\tK05788 ihfB; integration host factor subunit beta" }, { "name":"RHO11_02815 recQ; (GenBank) DNA helicase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"RHO11_02630 dinB; (GenBank) DNA polymerase IV\tK02346 dinB; DNA polymerase IV [EC:2.7.7.7]" }, { "name":"RHO11_04450 Y-family DNA polymerase\tK03502 umuC; DNA polymerase V" }, { "name":"RHO11_04890 umuC; (GenBank) translesion error-prone DNA polymerase V subunit UmuC\tK03502 umuC; DNA polymerase V" }, { "name":"RHO11_05200 hypothetical protein\tK03502 umuC; DNA polymerase V" }, { "name":"RHO11_04455 umuD; (GenBank) translesion error-prone DNA polymerase V autoproteolytic subunit\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]" }, { "name":"RHO11_04895 umuD; (GenBank) translesion error-prone DNA polymerase V autoproteolytic subunit\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]" }, { "name":"RHO11_05195 umuD; (GenBank) translesion error-prone DNA polymerase V autoproteolytic subunit\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]" }, { "name":"RHO11_06005 lexA; (GenBank) transcriptional repressor LexA\tK01356 lexA; repressor LexA [EC:3.4.21.88]" }, { "name":"RHO11_13520 DinI-like family protein\tK12149 dinI; DNA-damage-inducible protein I" }, { "name":"RHO11_06760 regulatory protein RecX\tK03565 recX; regulatory protein" }, { "name":"RHO11_00365 rep; (GenBank) DNA helicase Rep\tK03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]" }, { "name":"RHO11_03035 ATP-dependent DNA helicase\tK03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]" }, { "name":"RHO11_11525 nrdA; (GenBank) class 1a ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"RHO11_11520 nrdB; (GenBank) class Ia ribonucleoside-diphosphate reductase subunit beta\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" } ] }, { "name":"03029 Mitochondrial biogenesis [BR:omo03029]", "children":[ { "name":"RHO11_12285 infB; (GenBank) translation initiation factor IF-2\tK02519 infB; translation initiation factor IF-2" }, { "name":"RHO11_05500 infC; (GenBank) translation initiation factor IF-3\tK02520 infC; translation initiation factor IF-3" }, { "name":"RHO11_09270 tsf; (GenBank) translation elongation factor Ts\tK02357 tsf; elongation factor Ts" }, { "name":"RHO11_11090 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"RHO11_11255 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"RHO11_11250 fusA; (GenBank) elongation factor G\tK02355 fusA; elongation factor G" }, { "name":"RHO11_04555 era; (GenBank) GTPase Era\tK03595 era; GTPase" }, { "name":"RHO11_08725 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"RHO11_06570 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"RHO11_02920 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"RHO11_01240 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"RHO11_01640 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_04605 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"RHO11_07880 bamA; (GenBank) outer membrane protein assembly factor BamA\tK07277 SAM50; outer membrane protein insertion porin family" }, { "name":"RHO11_08910 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"RHO11_08795 grpE; (GenBank) nucleotide exchange factor GrpE\tK03687 GRPE; molecular chaperone GrpE" }, { "name":"RHO11_10780 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"RHO11_10775 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"RHO11_08905 dnaJ; (GenBank) molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"RHO11_11835 IscS subfamily cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"RHO11_11850 hscB; (GenBank) Fe-S protein assembly co-chaperone HscB\tK04082 hscB; molecular chaperone HscB" }, { "name":"RHO11_02640 Grx4 family monothiol glutaredoxin\tK07390 grxD; monothiol glutaredoxin" }, { "name":"RHO11_12505 apbC; (GenBank) iron-sulfur cluster carrier protein ApbC\tK03593 mrp; ATP-binding protein involved in chromosome partitioning" }, { "name":"RHO11_12230 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" } ] } ] }, { "name":"09183 Protein families: signaling and cellular processes", "children":[ { "name":"02000 Transporters [BR:omo02000]", "children":[ { "name":"RHO11_05360 msbA; (GenBank) lipid A ABC transporter ATP-binding protein\/permease MsbA\tK11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]" }, { "name":"RHO11_02690 ABC transporter ATP-binding protein\tK18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"RHO11_05625 cydC; (GenBank) cysteine\/glutathione ABC transporter ATP-binding protein\/permease CydC\tK16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC" }, { "name":"RHO11_05620 cydD; (GenBank) cysteine\/glutathione ABC transporter permease\/ATP-binding protein CydD\tK16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD" }, { "name":"RHO11_09700 MacB family efflux pump subunit\tK05685 macB; macrolide transport system ATP-binding\/permease protein [EC:7.6.2.-]" }, { "name":"RHO11_05990 ABC transporter ATP-binding protein\tK15738 uup; ABC transport system ATP-binding\/permease protein" }, { "name":"RHO11_00280 sulfate ABC transporter substrate-binding protein\tK23163 sbp; sulfate\/thiosulfate transport system substrate-binding protein" }, { "name":"RHO11_00285 cysT; (GenBank) sulfate ABC transporter permease subunit CysT\tK02046 cysU; sulfate\/thiosulfate transport system permease protein" }, { "name":"RHO11_00290 cysW; (GenBank) sulfate ABC transporter permease subunit CysW\tK02047 cysW; sulfate\/thiosulfate transport system permease protein" }, { "name":"RHO11_00295 sulfate ABC transporter ATP-binding protein\tK02045 cysA; sulfate\/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]" }, { "name":"RHO11_06130 modA; (GenBank) molybdate ABC transporter substrate-binding protein\tK02020 modA; molybdate transport system substrate-binding protein" }, { "name":"RHO11_06135 modB; (GenBank) molybdate ABC transporter permease subunit\tK02018 modB; molybdate transport system permease protein" }, { "name":"RHO11_06140 modC; (GenBank) molybdenum ABC transporter ATP-binding protein\tK02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]" }, { "name":"RHO11_05785 modF; (GenBank) molybdate ABC transporter ATP-binding protein ModF\tK05776 modF; molybdate transport system ATP-binding protein" }, { "name":"RHO11_06325 ABC transporter substrate-binding protein\tK15553 ssuA; sulfonate transport system substrate-binding protein" }, { "name":"RHO11_06315 ABC transporter permease\tK15554 ssuC; sulfonate transport system permease protein" }, { "name":"RHO11_06320 ABC transporter ATP-binding protein\tK15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]" }, { "name":"RHO11_01245 thiB; (GenBank) thiamine ABC transporter substrate binding subunit\tK02064 thiB; thiamine transport system substrate-binding protein" }, { "name":"RHO11_01250 thiP; (GenBank) thiamine\/thiamine pyrophosphate ABC transporter permease\tK02063 thiP; thiamine transport system permease protein" }, { "name":"RHO11_01255 thiQ; (GenBank) thiamine ABC transporter ATP-binding protein ThiQ\tK02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]" }, { "name":"RHO11_00970 extracellular solute-binding protein\tK11073 potF; putrescine transport system substrate-binding protein" }, { "name":"RHO11_03015 extracellular solute-binding protein\tK11073 potF; putrescine transport system substrate-binding protein" }, { "name":"RHO11_07175 extracellular solute-binding protein\tK11073 potF; putrescine transport system substrate-binding protein" }, { "name":"RHO11_03000 ABC transporter permease subunit\tK11074 potI; putrescine transport system permease protein" }, { "name":"RHO11_03005 potH; (GenBank) putrescine ABC transporter permease PotH\tK11075 potH; putrescine transport system permease protein" }, { "name":"RHO11_03010 potG; (GenBank) putrescine ABC transporter ATP-binding subunit PotG\tK11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]" }, { "name":"RHO11_02300 rbsB; (GenBank) ribose ABC transporter substrate-binding protein RbsB\tK10439 rbsB; ribose transport system substrate-binding protein" }, { "name":"RHO11_02305 rbsC; (GenBank) ribose ABC transporter permease\tK10440 rbsC; ribose transport system permease protein" }, { "name":"RHO11_02310 rbsA; (GenBank) ribose ABC transporter ATP-binding protein RbsA\tK10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]" }, { "name":"RHO11_07615 mlaD; (GenBank) outer membrane lipid asymmetry maintenance protein MlaD\tK02067 mlaD; phospholipid\/cholesterol\/gamma-HCH transport system substrate-binding protein" }, { "name":"RHO11_07620 mlaE; (GenBank) lipid asymmetry maintenance ABC transporter permease subunit MlaE\tK02066 mlaE; phospholipid\/cholesterol\/gamma-HCH transport system permease protein" }, { "name":"RHO11_07625 mlaF; (GenBank) phospholipid ABC transporter ATP-binding protein MlaF\tK02065 mlaF; phospholipid\/cholesterol\/gamma-HCH transport system ATP-binding protein" }, { "name":"RHO11_07610 mlaC; (GenBank) phospholipid-binding protein MlaC\tK07323 mlaC; phospholipid transport system substrate-binding protein" }, { "name":"RHO11_07605 STAS domain-containing protein\tK07122 mlaB; phospholipid transport system transporter-binding protein" }, { "name":"RHO11_02535 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"RHO11_02530 pstC; (GenBank) phosphate ABC transporter permease PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"RHO11_02525 pstA; (GenBank) phosphate ABC transporter permease PstA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"RHO11_02520 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"RHO11_03170 lysine\/arginine\/ornithine ABC transporter substrate-binding protein\tK09997 artI; arginine transport system substrate-binding protein" }, { "name":"RHO11_03180 artM; (GenBank) arginine ABC transporter permease ArtM\tK09998 artM; arginine transport system permease protein" }, { "name":"RHO11_03175 artQ; (GenBank) arginine ABC transporter permease ArtQ\tK09999 artQ; arginine transport system permease protein" }, { "name":"RHO11_03165 artP; (GenBank) arginine ABC transporter ATP-binding protein ArtP\tK10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_04290 glutamate\/aspartate ABC transporter substrate-binding protein\tK10001 gltI; glutamate\/aspartate transport system substrate-binding protein" }, { "name":"RHO11_04300 ABC transporter permease subunit\tK10002 gltK; glutamate\/aspartate transport system permease protein" }, { "name":"RHO11_04295 amino acid ABC transporter permease\tK10003 gltJ; glutamate\/aspartate transport system permease protein" }, { "name":"RHO11_04305 amino acid ABC transporter ATP-binding protein\tK10004 gltL; glutamate\/aspartate transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_13020 hypothetical protein\tK10009 tcyB; L-cystine transport system permease protein" }, { "name":"RHO11_00910 MetQ\/NlpA family ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"RHO11_07960 MetQ\/NlpA family ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"RHO11_08285 metQ; (GenBank) methionine ABC transporter substrate-binding lipoprotein MetQ\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"RHO11_00920 methionine ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"RHO11_07970 methionine ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"RHO11_08280 metI; (GenBank) methionine ABC transporter permease MetI\tK02072 metI; D-methionine transport system permease protein" }, { "name":"RHO11_00915 methionine ABC transporter ATP-binding protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"RHO11_07965 ATP-binding cassette domain-containing protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"RHO11_08275 metN; (GenBank) methionine ABC transporter ATP-binding protein MetN\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"RHO11_07210 ABC transporter substrate-binding protein\tK01989 K01989; putative tryptophan\/tyrosine transport system substrate-binding protein" }, { "name":"RHO11_07215 ABC transporter substrate-binding protein\tK01989 K01989; putative tryptophan\/tyrosine transport system substrate-binding protein" }, { "name":"RHO11_07220 ABC transporter permease\tK05832 K05832; putative tryptophan\/tyrosine transport system permease protein" }, { "name":"RHO11_07225 ABC transporter ATP-binding protein\tK05833 K05833; putative tryptophan\/tyrosine transport system ATP-binding protein" }, { "name":"RHO11_07365 amino acid ABC transporter substrate-binding protein\tK16961 yxeM; putative S-methylcysteine transport system substrate-binding protein" }, { "name":"RHO11_07360 amino acid ABC transporter permease\tK16962 yxeN; putative S-methylcysteine transport system permease protein" }, { "name":"RHO11_07355 amino acid ABC transporter ATP-binding protein\tK16963 yxeO; putative S-methylcysteine transport system ATP-binding protein" }, { "name":"RHO11_03775 amino acid ABC transporter substrate-binding protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"RHO11_03910 ABC transporter substrate-binding protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"RHO11_04245 basic amino acid ABC transporter substrate-binding protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"RHO11_12350 transporter substrate-binding domain-containing protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"RHO11_03770 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"RHO11_03900 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"RHO11_03905 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"RHO11_04250 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"RHO11_12340 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"RHO11_12345 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"RHO11_03765 amino acid ABC transporter ATP-binding protein\tK02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_04255 amino acid ABC transporter ATP-binding protein\tK02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_12335 amino acid ABC transporter ATP-binding protein\tK02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"RHO11_02675 ABC transporter substrate-binding protein\tK12368 dppA; dipeptide transport system substrate-binding protein" }, { "name":"RHO11_05600 ABC transporter substrate-binding protein\tK12368 dppA; dipeptide transport system substrate-binding protein" }, { "name":"RHO11_05595 dppB; (GenBank) dipeptide ABC transporter permease DppB\tK12369 dppB; dipeptide transport system permease protein" }, { "name":"RHO11_05590 dppC; (GenBank) dipeptide ABC transporter permease DppC\tK12370 dppC; dipeptide transport system permease protein" }, { "name":"RHO11_05585 dppD; (GenBank) dipeptide ABC transporter ATP-binding protein\tK12371 dppD; dipeptide transport system ATP-binding protein" }, { "name":"RHO11_05580 peptide ABC transporter ATP-binding protein\tK12372 dppF; dipeptide transport system ATP-binding protein" }, { "name":"RHO11_11180 ABC transporter permease subunit\tK19227 sapB; cationic peptide transport system permease protein" }, { "name":"RHO11_11185 ABC transporter permease subunit\tK19228 sapC; cationic peptide transport system permease protein" }, { "name":"RHO11_11190 ATP-binding cassette domain-containing protein\tK19229 sapD; cationic peptide transport system ATP-binding protein" }, { "name":"RHO11_11195 ATP-binding cassette domain-containing protein\tK19230 sapF; cationic peptide transport system ATP-binding protein" }, { "name":"RHO11_00035 extracellular solute-binding protein\tK13893 yejA; microcin C transport system substrate-binding protein" }, { "name":"RHO11_00040 yejB; (GenBank) microcin C ABC transporter permease YejB\tK13894 yejB; microcin C transport system permease protein" }, { "name":"RHO11_00045 microcin C ABC transporter permease\tK13895 yejE; microcin C transport system permease protein" }, { "name":"RHO11_00050 yejF; (GenBank) microcin C ABC transporter ATP-binding protein YejF\tK13896 yejF; microcin C transport system ATP-binding protein" }, { "name":"RHO11_03520 ABC transporter substrate-binding protein\tK25132 hmuT; heme transport system substrate-binding protein" }, { "name":"RHO11_03495 iron ABC transporter permease\tK25133 hmuU; heme transport system permease protein" }, { "name":"RHO11_03490 heme ABC transporter ATP-binding protein\tK10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]" }, { "name":"RHO11_02715 siderophore ABC transporter substrate-binding protein\tK25282 yclQ; iron-siderophore transport system substrate-binding protein" }, { "name":"RHO11_02705 iron chelate uptake ABC transporter family permease subunit\tK25283 yclO; iron-siderophore transport system permease protein" }, { "name":"RHO11_02710 iron chelate uptake ABC transporter family permease subunit\tK25284 yclN; iron-siderophore transport system permease protein" }, { "name":"RHO11_02700 ATP-binding cassette domain-containing protein\tK25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"RHO11_11730 znuA; (GenBank) zinc ABC transporter substrate-binding protein ZnuA\tK09815 znuA; zinc transport system substrate-binding protein" }, { "name":"RHO11_11720 znuB; (GenBank) zinc ABC transporter permease subunit ZnuB\tK09816 znuB; zinc transport system permease protein" }, { "name":"RHO11_11725 znuC; (GenBank) zinc ABC transporter ATP-binding protein ZnuC\tK09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]" }, { "name":"RHO11_12050 metal ABC transporter substrate-binding protein\tK11604 sitA; manganese\/iron transport system substrate-binding protein" }, { "name":"RHO11_12060 metal ABC transporter permease\tK11605 sitC; manganese\/iron transport system permease protein" }, { "name":"RHO11_12065 metal ABC transporter permease\tK11606 sitD; manganese\/iron transport system permease protein" }, { "name":"RHO11_12055 manganese\/iron ABC transporter ATP-binding protein\tK11607 sitB; manganese\/iron transport system ATP-binding protein" }, { "name":"RHO11_08530 biotin transporter BioY\tK03523 bioY; biotin transport system substrate-specific component" }, { "name":"RHO11_02140 lptF; (GenBank) LPS export ABC transporter permease LptF\tK07091 lptF; lipopolysaccharide export system permease protein" }, { "name":"RHO11_02135 lptG; (GenBank) LPS export ABC transporter permease LptG\tK11720 lptG; lipopolysaccharide export system permease protein" }, { "name":"RHO11_10925 lptB; (GenBank) LPS export ABC transporter ATP-binding protein\tK06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]" }, { "name":"RHO11_02565 ABC transporter permease\tK25180 ybhR; drug efflux transport system permease protein" }, { "name":"RHO11_02570 ABC transporter permease\tK25181 ybhS; drug efflux transport system permease protein" }, { "name":"RHO11_02575 ATP-binding cassette domain-containing protein\tK25182 ybhF; drug efflux transport system ATP-binding protein" }, { "name":"RHO11_02580 efflux RND transporter periplasmic adaptor subunit\tK25183 ybhG; membrane fusion protein YbhG" }, { "name":"RHO11_02220 lolE; (GenBank) lipoprotein-releasing ABC transporter permease subunit LolE\tK09808 lolC_E_F; lipoprotein-releasing system permease protein" }, { "name":"RHO11_02230 lolC; (GenBank) lipoprotein-releasing ABC transporter permease subunit LolC\tK09808 lolC_E_F; lipoprotein-releasing system permease protein" }, { "name":"RHO11_02225 lolD; (GenBank) lipoprotein-releasing ABC transporter ATP-binding protein LolD\tK09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]" }, { "name":"RHO11_09235 ftsX; (GenBank) permease-like cell division protein FtsX\tK09811 ftsX; cell division transport system permease protein" }, { "name":"RHO11_09230 ftsE; (GenBank) cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"RHO11_00555 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"RHO11_02930 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"RHO11_02935 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"RHO11_11115 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"RHO11_11120 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"RHO11_13735 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"RHO11_13730 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"RHO11_12330 bile acid:sodium symporter family protein\tK14347 SLC10A7; solute carrier family 10 (sodium\/bile acid cotransporter), member 7" }, { "name":"RHO11_01100 MATE family efflux transporter\tK26939 norM; MATE family, multidrug efflux pump" }, { "name":"RHO11_00890 MATE family efflux transporter\tK26937 dinF; MATE family, multidrug efflux pump" }, { "name":"RHO11_02665 MFS transporter\tK02532 lacY; MFS transporter, OHS family, lactose permease" }, { "name":"RHO11_03845 oligosaccharide MFS transporter\tK02532 lacY; MFS transporter, OHS family, lactose permease" }, { "name":"RHO11_06930 fucP; (GenBank) L-fucose:H+ symporter permease\tK02429 fucP; MFS transporter, FHS family, fucose-galactose-glucose:H+ symporter family protein" }, { "name":"RHO11_00980 MFS transporter\tK03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter" }, { "name":"RHO11_05930 nucleoside permease\tK11537 xapB; MFS transporter, NHS family, xanthosine permease" }, { "name":"RHO11_03830 proP; (GenBank) glycine betaine\/L-proline transporter ProP\tK03762 proP; MFS transporter, MHS family, proline\/betaine transporter" }, { "name":"RHO11_10945 MFS transporter\tK03762 proP; MFS transporter, MHS family, proline\/betaine transporter" }, { "name":"RHO11_13710 MFS transporter\tK03762 proP; MFS transporter, MHS family, proline\/betaine transporter" }, { "name":"RHO11_11200 MFS transporter\tK08173 ydfJ; MFS transporter, MHS family, metabolite:H+ symporter" }, { "name":"RHO11_02600 MFS transporter\tK08191 exuT; MFS transporter, ACS family, aldohexuronate transporter" }, { "name":"RHO11_13750 MFS transporter\tK08191 exuT; MFS transporter, ACS family, aldohexuronate transporter" }, { "name":"RHO11_12145 MFS transporter\tK08194 dgoT; MFS transporter, ACS family, D-galactonate transporter" }, { "name":"RHO11_03945 MFS transporter\tK26580 rhmT; MFS transporter, ACS family, inner membrane transport protein" }, { "name":"RHO11_06020 MFS transporter\tK26744 vanK; MFS transporter, AAHS family, vanillate permease" }, { "name":"RHO11_05400 MFS transporter\tK26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter" }, { "name":"RHO11_05405 MFS transporter\tK26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter" }, { "name":"RHO11_06285 MFS transporter\tK28762 niaP; MFS transporter, niacin uptake porter" }, { "name":"RHO11_02425 NarK family nitrate\/nitrite MFS transporter\tK02575 NRT2; MFS transporter, NNP family, nitrate\/nitrite transporter" }, { "name":"RHO11_06590 lplT; (GenBank) lysophospholipid transporter LplT\tK08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter" }, { "name":"RHO11_12780 AmpG family muropeptide MFS transporter\tK08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG" }, { "name":"RHO11_04055 sugar transporter\tK08159 sotB; MFS transporter, DHA1 family, L-arabinose\/isopropyl-beta-D-thiogalactopyranoside export protein" }, { "name":"RHO11_07660 mdtH; (GenBank) multidrug efflux MFS transporter MdtH\tK08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein" }, { "name":"RHO11_01530 DHA2 family efflux MFS transporter permease subunit\tK03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"RHO11_05810 MFS transporter\tK08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein" }, { "name":"RHO11_09565 ptsI; (GenBank) phosphoenolpyruvate-protein phosphotransferase PtsI\tK08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]" }, { "name":"RHO11_02810 HPr family phosphocarrier protein\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"RHO11_09560 ptsH; (GenBank) phosphocarrier protein Hpr\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"RHO11_11280 PTS sugar transporter subunit IIA\tK02784 ptsH; phosphocarrier protein HPr" }, { "name":"RHO11_00265 fruB; (GenBank) fused PTS fructose transporter subunit IIA\/HPr protein\tK11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]" }, { "name":"RHO11_00540 PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09570 crr; (GenBank) PTS glucose transporter subunit IIA\tK02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]" }, { "name":"RHO11_09620 malX; (GenBank) maltose\/glucose-specific PTS transporter subunit IIBC\tK02791 malX; maltose\/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]" }, { "name":"RHO11_02480 treB; (GenBank) PTS trehalose transporter subunit IIBC\tK02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]" }, { "name":"RHO11_12980 murP; (GenBank) PTS N-acetylmuramic acid transporter subunit IIBC\tK11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]" }, { "name":"RHO11_00275 fruA; (GenBank) PTS fructose transporter subunit IIBC\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"RHO11_11285 PTS fructose transporter subunit IIBC\tK02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]" }, { "name":"RHO11_08415 PTS mannitol transporter subunit IICBA\tK02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]" }, { "name":"RHO11_10580 PTS mannitol transporter subunit IICB\tK02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]" }, { "name":"RHO11_04685 PTS lactose\/cellobiose transporter subunit IIA\tK02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]" }, { "name":"RHO11_04680 PTS sugar transporter subunit IIB\tK02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]" }, { "name":"RHO11_04670 PTS transporter subunit EIIC\tK02761 celB; cellobiose PTS system EIIC component" }, { "name":"RHO11_00195 PTS glucitol\/sorbitol transporter subunit IIA\tK02781 srlB; glucitol\/sorbitol PTS system EIIA component [EC:2.7.1.198]" }, { "name":"RHO11_07020 PTS glucitol\/sorbitol transporter subunit IIA\tK02781 srlB; glucitol\/sorbitol PTS system EIIA component [EC:2.7.1.198]" }, { "name":"RHO11_07025 PTS glucitol\/sorbitol transporter subunit IIB\tK02782 srlE; glucitol\/sorbitol PTS system EIIB component [EC:2.7.1.198]" }, { "name":"RHO11_07030 srlA; (GenBank) glucitol\/sorbitol-specific PTS transporter subunit IIC\tK02783 srlA; glucitol\/sorbitol PTS system EIIC component" }, { "name":"RHO11_03440 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_08105 gatA; (GenBank) PTS galactitol transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_09135 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_09740 PTS sugar transporter subunit IIA\tK02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]" }, { "name":"RHO11_03445 PTS galactitol transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_08110 gatB; (GenBank) PTS galactitol transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_09145 PTS sugar transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_09745 PTS sugar transporter subunit IIB\tK02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]" }, { "name":"RHO11_03450 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_08115 PTS galactitol transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_09140 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_09750 PTS transporter subunit IIC\tK02775 gatC; galactitol PTS system EIIC component" }, { "name":"RHO11_05510 mannose\/fructose\/sorbose PTS transporter subunit IIB\tK02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]" }, { "name":"RHO11_10015 PTS sugar transporter subunit IIA\tK02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]" }, { "name":"RHO11_05515 PTS mannose\/fructose\/sorbose transporter subunit IIC\tK02795 manY; mannose PTS system EIIC component" }, { "name":"RHO11_05520 PTS system mannose\/fructose\/sorbose family transporter subunit IID\tK02796 manZ; mannose PTS system EIID component" }, { "name":"RHO11_10000 PTS sugar transporter subunit IIC\tK17466 dgaC; D-glucosaminate PTS system EIIC component" }, { "name":"RHO11_10005 PTS system mannose\/fructose\/sorbose family transporter subunit IID\tK17467 dgaD; D-glucosaminate PTS system EIID component" }, { "name":"RHO11_00655 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_10575 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_11805 PTS sugar transporter subunit IIA\tK02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]" }, { "name":"RHO11_00650 PTS ascorbate-specific subunit IIBC\tK02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]" }, { "name":"RHO11_11810 PTS sugar transporter subunit IIB\tK02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]" }, { "name":"RHO11_06605 PTS ascorbate transporter subunit IIC\tK03475 ulaA; ascorbate PTS system EIIC component" }, { "name":"RHO11_11815 PTS ascorbate transporter subunit IIC\tK03475 ulaA; ascorbate PTS system EIIC component" }, { "name":"RHO11_10640 dhaM; (GenBank) dihydroxyacetone kinase phosphoryl donor subunit DhaM\tK05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]" }, { "name":"RHO11_09365 aquaporin\tK06188 aqpZ; aquaporin" }, { "name":"RHO11_12200 amtB; (GenBank) ammonium transporter AmtB\tK03320 amt; ammonium transporter, Amt family" }, { "name":"RHO11_01135 glutathione S-transferase family protein\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"RHO11_01395 glutathione S-transferase family protein\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"RHO11_12305 gstA; (GenBank) glutathione transferase GstA\tK00799 GST; glutathione S-transferase [EC:2.5.1.18]" }, { "name":"RHO11_05100 glutathione S-transferase N-terminal domain-containing protein\tK03599 sspA; stringent starvation protein A" }, { "name":"RHO11_07310 focA; (GenBank) formate transporter FocA\tK06212 focA; formate transporter" }, { "name":"RHO11_00360 mscM; (GenBank) miniconductance mechanosensitive channel MscM\tK22051 mscM; miniconductance mechanosensitive channel" }, { "name":"RHO11_08350 mechanosensitive ion channel\tK03442 mscS; small conductance mechanosensitive channel" }, { "name":"RHO11_03825 mechanosensitive ion channel\tK16053 ybdG; miniconductance mechanosensitive channel" }, { "name":"RHO11_04540 tolQ; (GenBank) protein TolQ\tK03562 tolQ; biopolymer transport protein TolQ" }, { "name":"RHO11_04535 tolR; (GenBank) colicin uptake protein TolR\tK03560 tolR; biopolymer transport protein TolR" }, { "name":"RHO11_02980 corA; (GenBank) magnesium\/cobalt transporter CorA\tK03284 corA; magnesium transporter" }, { "name":"RHO11_00880 zntB; (GenBank) zinc transporter ZntB\tK16074 zntB; zinc transporter" }, { "name":"RHO11_02265 crcB; (GenBank) fluoride efflux transporter CrcB\tK06199 crcB; fluoride exporter" }, { "name":"RHO11_07650 porin\tK14062 ompN; outer membrane protein N" }, { "name":"RHO11_11030 ompA; (GenBank) porin OmpA\tK03286 TC.OOP; OmpA-OmpF porin, OOP family" }, { "name":"RHO11_06450 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" }, { "name":"RHO11_10255 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" }, { "name":"RHO11_00750 autotransporter outer membrane beta-barrel domain-containing protein\tK12678 aidA-I; autotransporter family porin" }, { "name":"RHO11_10240 autotransporter outer membrane beta-barrel domain-containing protein\tK12678 aidA-I; autotransporter family porin" }, { "name":"RHO11_02695 FepA family TonB-dependent siderophore receptor\tK19611 fepA; ferric enterobactin receptor" }, { "name":"RHO11_04190 TonB-dependent siderophore receptor\tK19611 fepA; ferric enterobactin receptor" }, { "name":"RHO11_03515 TonB-dependent receptor\tK16087 TC.FEV.OM3; hemoglobin\/transferrin\/lactoferrin receptor protein" }, { "name":"RHO11_12825 tolC; (GenBank) outer membrane channel protein TolC\tK12340 tolC; outer membrane protein" }, { "name":"RHO11_06725 polysaccharide export protein\tK01991 wza; polysaccharide biosynthesis\/export protein" }, { "name":"RHO11_13720 carbohydrate porin\tK07267 oprB; porin" }, { "name":"RHO11_07880 bamA; (GenBank) outer membrane protein assembly factor BamA\tK07277 SAM50; outer membrane protein insertion porin family" }, { "name":"RHO11_08755 bamB; (GenBank) outer membrane protein assembly factor BamB\tK17713 bamB; outer membrane protein assembly factor BamB" }, { "name":"RHO11_04025 bamC; (GenBank) outer membrane protein assembly factor BamC\tK07287 bamC; outer membrane protein assembly factor BamC" }, { "name":"RHO11_12070 bamD; (GenBank) outer membrane protein assembly factor BamD\tK05807 bamD; outer membrane protein assembly factor BamD" }, { "name":"RHO11_07170 bamE; (GenBank) outer membrane protein assembly factor BamE\tK06186 bamE; outer membrane protein assembly factor BamE" }, { "name":"RHO11_06070 autotransporter assembly complex family protein\tK07278 tamA; translocation and assembly module TamA" }, { "name":"RHO11_06065 translocation\/assembly module TamB domain-containing protein\tK09800 tamB; translocation and assembly module TamB" }, { "name":"RHO11_10620 oligogalacturonate-specific porin KdgM family protein\tK22110 kdgM; oligogalacturonate-specific porin family protein" }, { "name":"RHO11_10790 oligogalacturonate-specific porin KdgM family protein\tK22110 kdgM; oligogalacturonate-specific porin family protein" }, { "name":"RHO11_10930 lptA; (GenBank) lipopolysaccharide transport periplasmic protein LptA\tK09774 lptA; lipopolysaccharide export system protein LptA" }, { "name":"RHO11_10935 lptC; (GenBank) LPS export ABC transporter periplasmic protein LptC\tK11719 lptC; lipopolysaccharide export system protein LptC" }, { "name":"RHO11_04210 lptD; (GenBank) LPS assembly protein LptD\tK04744 lptD; LPS-assembly protein" }, { "name":"RHO11_06575 lptE; (GenBank) LPS assembly lipoprotein LptE\tK03643 lptE; LPS-assembly lipoprotein" }, { "name":"RHO11_02020 MipA\/OmpV family protein\tK07274 mipA; MipA family protein" }, { "name":"RHO11_11040 MipA\/OmpV family protein\tK07274 mipA; MipA family protein" }, { "name":"RHO11_04280 corC; (GenBank) CNNM family magnesium\/cobalt transport protein CorC\tK06189 corC; hemolysin (HlyC) family protein" }, { "name":"RHO11_03150 CidA\/LrgA family protein\tK06518 cidA; holin-like protein" }, { "name":"RHO11_10355 MFS transporter\tK16210 togT; oligogalacturonide transporter" }, { "name":"RHO11_10785 MFS transporter\tK16210 togT; oligogalacturonide transporter" }, { "name":"RHO11_12115 amino acid permease\tK11733 lysP; lysine-specific permease" }, { "name":"RHO11_12475 cycA; (GenBank) D-serine\/D-alanine\/glycine transporter\tK11737 cycA; D-serine\/D-alanine\/glycine transporter" }, { "name":"RHO11_03855 mmuP; (GenBank) S-methylmethionine permease\tK16235 mmuP; S-methylmethionine transporter" }, { "name":"RHO11_06550 cadB; (GenBank) cadaverine\/lysine antiporter\tK03757 cadB; cadaverine:lysine antiporter" }, { "name":"RHO11_06560 basic amino acid\/polyamine antiporter\tK03758 arcD; arginine:ornithine antiporter \/ lysine permease" }, { "name":"RHO11_13075 yjeH; (GenBank) L-methionine\/branched-chain amino acid transporter\tK16263 yjeH; amino acid efflux transporter" }, { "name":"RHO11_08595 cation diffusion facilitator family transporter\tK13283 fieF; ferrous-iron efflux pump FieF" }, { "name":"RHO11_01490 zupT; (GenBank) zinc transporter ZupT\tK07238 TC.ZIP; zinc transporter, ZIP family" }, { "name":"RHO11_00375 efflux RND transporter permease subunit\tK18138 acrB; multidrug efflux pump" }, { "name":"RHO11_01235 SMR family transporter\tK03297 emrE; small multidrug resistance pump" }, { "name":"RHO11_03255 SMR family transporter\tK03297 emrE; small multidrug resistance pump" }, { "name":"RHO11_07285 sugE; (GenBank) quaternary ammonium compound efflux SMR transporter SugE\tK11741 sugE; quaternary ammonium compound-resistance protein SugE" }, { "name":"RHO11_00800 EamA family transporter\tK08978 TC.BAT1; bacterial\/archaeal transporter family protein" }, { "name":"RHO11_12600 EamA family transporter\tK03298 TC.DME; drug\/metabolite transporter, DME family" }, { "name":"RHO11_12300 EamA family transporter\tK11939 rhtA; inner membrane transporter RhtA" }, { "name":"RHO11_10310 rhaT; (GenBank) L-rhamnose\/proton symporter RhaT\tK02856 rhaT; L-rhamnose-H+ transport protein" }, { "name":"RHO11_02785 rarD; (GenBank) EamA family transporter RarD\tK05786 rarD; chloramphenicol-sensitive protein RarD" }, { "name":"RHO11_07300 rarD; (GenBank) EamA family transporter RarD\tK05786 rarD; chloramphenicol-sensitive protein RarD" }, { "name":"RHO11_08045 SLC13 family permease\tK03299 TC.GNTP; gluconate:H+ symporter, GntP family" }, { "name":"RHO11_08655 gluconate:H+ symporter\tK03299 TC.GNTP; gluconate:H+ symporter, GntP family" }, { "name":"RHO11_11990 GntP family transporter\tK03299 TC.GNTP; gluconate:H+ symporter, GntP family" }, { "name":"RHO11_00210 2-keto-3-deoxygluconate permease\tK02526 kdgT; 2-keto-3-deoxygluconate permease" }, { "name":"RHO11_09040 kdgT; (GenBank) 2-keto-3-deoxygluconate transporter\tK02526 kdgT; 2-keto-3-deoxygluconate permease" }, { "name":"RHO11_07675 chaA; (GenBank) sodium-potassium\/proton antiporter ChaA\tK07300 chaA; Ca2+:H+ antiporter" }, { "name":"RHO11_12325 pitA; (GenBank) inorganic phosphate transporter PitA\tK16322 pit; low-affinity inorganic phosphate transporter" }, { "name":"RHO11_12170 panF; (GenBank) sodium\/pantothenate symporter\tK14392 panF; sodium\/pantothenate symporter" }, { "name":"RHO11_08720 putP; (GenBank) sodium\/proline symporter PutP\tK11928 putP; sodium\/proline symporter" }, { "name":"RHO11_07265 cation:dicarboxylase symporter family transporter\tK11102 gltP; proton glutamate symport protein" }, { "name":"RHO11_06010 sstT; (GenBank) serine\/threonine transporter SstT\tK07862 sstT; serine\/threonine transporter" }, { "name":"RHO11_04625 Na+\/H+ antiporter\tK24163 nhaK; monovalent cation\/hydrogen antiporter" }, { "name":"RHO11_06940 TrkH family potassium uptake protein\tK03498 trkH; trk\/ktr system potassium uptake protein" }, { "name":"RHO11_08030 trkA; (GenBank) Trk system potassium transporter TrkA\tK03499 trkA; trk\/ktr system potassium uptake protein" }, { "name":"RHO11_11050 codB; (GenBank) cytosine permease\tK10974 codB; cytosine permease" }, { "name":"RHO11_08970 uracil-xanthine permease family protein\tK02824 uraA; uracil permease" }, { "name":"RHO11_08805 uracil-xanthine permease family protein\tK16345 xanP; xanthine permease XanP" }, { "name":"RHO11_03750 NCS2 family permease\tK06901 pbuG; adenine\/guanine\/hypoxanthine permease" }, { "name":"RHO11_10195 NCS2 family permease\tK06901 pbuG; adenine\/guanine\/hypoxanthine permease" }, { "name":"RHO11_11225 NCS2 family permease\tK06901 pbuG; adenine\/guanine\/hypoxanthine permease" }, { "name":"RHO11_09295 serine\/threonine transporter\tK03837 sdaC; serine transporter" }, { "name":"RHO11_02415 clcA; (GenBank) H(+)\/Cl(-) exchange transporter ClcA\tK03281 clcA; chloride channel protein, CIC family" }, { "name":"RHO11_04980 clcA; (GenBank) H(+)\/Cl(-) exchange transporter ClcA\tK03281 clcA; chloride channel protein, CIC family" }, { "name":"RHO11_08430 dauA; (GenBank) C4-dicarboxylic acid transporter DauA\tK03321 TC.SULP; sulfate permease, SulP family" }, { "name":"RHO11_00335 murJ; (GenBank) murein biosynthesis integral membrane protein MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"RHO11_05075 oligopeptide transporter, OPT family\tK28868 K28868; oligopeptide transporter family protein" }, { "name":"RHO11_03925 yfdV; (GenBank) transporter YfdV\tK13936 mdcF; malonate transporter and related proteins" }, { "name":"RHO11_05650 AEC family transporter\tK13936 mdcF; malonate transporter and related proteins" }, { "name":"RHO11_11510 AEC family transporter\tK24180 mleP; malate permease and related proteins" }, { "name":"RHO11_06055 KUP\/HAK\/KT family potassium transporter\tK03549 kup; KUP system potassium uptake protein" }, { "name":"RHO11_08480 LysE family transporter\tK05835 rhtC; threonine efflux protein" }, { "name":"RHO11_00425 AzlC family ABC transporter permease\tK26605 azlC; branched chain amino acid efflux pump" }, { "name":"RHO11_00430 AzlD domain-containing protein\tK26606 azlD; branched chain amino acid efflux pump" }, { "name":"RHO11_03415 FUSC family protein\tK15547 mdtO; multidrug resistance protein MdtO" }, { "name":"RHO11_03365 AI-2E family transporter\tK03548 perM; putative permease" }, { "name":"RHO11_05460 7-cyano-7-deazaguanine\/7-aminomethyl-7-deazaguanine transporter\tK09125 yhhQ; queuosine precursor transporter" }, { "name":"RHO11_05335 MarC family NAAT transporter\tK05595 marC; multiple antibiotic resistance protein" }, { "name":"RHO11_08915 satP; (GenBank) acetate uptake transporter\tK07034 GPR1; acetate uptake transporter family protein" }, { "name":"RHO11_08220 manganese efflux pump MntP family protein\tK23242 mntP; manganese efflux pump family protein" }, { "name":"RHO11_09200 FTR1 family protein\tK07243 FTR; high-affinity iron transporter" }, { "name":"RHO11_09195 EfeM\/EfeO family lipoprotein\tK07224 efeO; iron uptake system component EfeO" }, { "name":"RHO11_09190 efeB; (GenBank) iron uptake transporter deferrochelatase\/peroxidase subunit\tK16301 efeB; deferrochelatase\/peroxidase EfeB [EC:1.11.1.-]" }, { "name":"RHO11_09210 iron transporter\tK07230 p19; periplasmic iron binding protein" }, { "name":"RHO11_00160 nickel\/cobalt transporter\tK08970 rcnA; nickel\/cobalt transporter (NicO) family protein" }, { "name":"RHO11_05675 carbon starvation CstA family protein\tK23676 btsT; pyruvate\/proton symporter" }, { "name":"RHO11_04110 lysine exporter LysO family protein\tK28370 lysO; lysine exporter" }, { "name":"RHO11_04520 pal; (GenBank) peptidoglycan-associated lipoprotein Pal\tK03640 pal; peptidoglycan-associated lipoprotein" }, { "name":"RHO11_04525 tolB; (GenBank) Tol-Pal system beta propeller repeat protein TolB\tK03641 tolB; TolB protein" }, { "name":"RHO11_02430 nitrate reductase subunit alpha\tK00370 narG; nitrate reductase \/ nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02435 narH; (GenBank) nitrate reductase subunit beta\tK00371 narH; nitrate reductase \/ nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02445 narI; (GenBank) respiratory nitrate reductase subunit gamma\tK00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]" }, { "name":"RHO11_02495 DMSO\/selenate family reductase complex A subunit\tK07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]" }, { "name":"RHO11_02500 DMSO\/selenate family reductase complex B subunit\tK07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B" }, { "name":"RHO11_02505 DmsC\/YnfH family molybdoenzyme membrane anchor subunit\tK07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C" }, { "name":"RHO11_01535 EmrA\/EmrK family multidrug efflux transporter periplasmic adaptor subunit\tK03543 emrA; membrane fusion protein, multidrug efflux system" }, { "name":"RHO11_03420 mdtN; (GenBank) multidrug transporter subunit MdtN\tK15549 mdtN; membrane fusion protein, multidrug efflux system" }, { "name":"RHO11_00380 efflux RND transporter periplasmic adaptor subunit\tK03585 acrA; membrane fusion protein, multidrug efflux system" }, { "name":"RHO11_09695 efflux RND transporter periplasmic adaptor subunit\tK13888 macA; membrane fusion protein, macrolide-specific efflux system" }, { "name":"RHO11_06715 polysaccharide biosynthesis tyrosine autokinase\tK16692 etk-wzc; tyrosine-protein kinase Etk\/Wzc [EC:2.7.10.3]" }, { "name":"RHO11_06840 dolP; (GenBank) division\/outer membrane stress-associated lipid-binding lipoprotein\tK28369 dolP; outer membrane lipoprotein DolP" }, { "name":"RHO11_13625 pnuC; (GenBank) nicotinamide riboside transporter PnuC\tK03811 pnuC; nicotinamide mononucleotide transporter" }, { "name":"RHO11_00145 FeoA family protein\tK04758 feoA; ferrous iron transport protein A" }, { "name":"RHO11_00150 feoB; (GenBank) Fe(2+) transporter permease subunit FeoB\tK04759 feoB; ferrous iron transport protein B" }, { "name":"RHO11_05985 PqiA\/YebS family transporter subunit\tK03808 pqiA; intermembrane transport protein PqiA\/LetA" }, { "name":"RHO11_05980 pqiB; (GenBank) intermembrane transport protein PqiB\tK06192 pqiB; intermembrane transport protein PqiB\/LetB" }, { "name":"RHO11_05975 ABC-type transport auxiliary lipoprotein family protein\tK09857 pqiC; intermembrane transport lipoprotein PqiC" }, { "name":"RHO11_02015 entericidin A\/B family lipoprotein\tK16348 ecnB; entericidin B" } ] }, { "name":"02044 Secretion system [BR:omo02044]", "children":[ { "name":"RHO11_12825 tolC; (GenBank) outer membrane channel protein TolC\tK12340 tolC; outer membrane protein" }, { "name":"RHO11_06675 prepilin peptidase\tK02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]" }, { "name":"RHO11_08225 hypothetical protein\tK02656 pilF; type IV pilus assembly protein PilF" }, { "name":"RHO11_01505 PilT\/PilU family type 4a pilus ATPase\tK02669 pilT; twitching motility protein PilT" }, { "name":"RHO11_00225 prepilin-type N-terminal cleavage\/methylation domain-containing protein\tK02679 ppdA; prepilin peptidase dependent protein A" }, { "name":"RHO11_04815 prepilin-type N-terminal cleavage\/methylation domain-containing protein\tK02679 ppdA; prepilin peptidase dependent protein A" }, { "name":"RHO11_00230 prepilin-type N-terminal cleavage\/methylation domain-containing protein\tK02680 ppdB; prepilin peptidase dependent protein B" }, { "name":"RHO11_00240 prepilin-type N-terminal cleavage\/methylation domain-containing protein\tK02681 ppdC; prepilin peptidase dependent protein C" }, { "name":"RHO11_06660 ppdD; (GenBank) prepilin peptidase-dependent pilin\tK02682 ppdD; prepilin peptidase dependent protein D" }, { "name":"RHO11_06665 ATPase, T2SS\/T4P\/T4SS family\tK02504 hofB; protein transport protein HofB" }, { "name":"RHO11_06670 hofC; (GenBank) protein transport protein HofC\tK02505 hofC; protein transport protein HofC" }, { "name":"RHO11_12030 pilQ; (GenBank) type IV pilus secretin PilQ\tK02507 hofQ; protein transport protein HofQ" }, { "name":"RHO11_01495 YggT family protein\tK02221 yggT; YggT family protein" }, { "name":"RHO11_07840 ComEA family DNA-binding protein\tK02237 comEA; competence protein ComEA" }, { "name":"RHO11_05365 DNA internalization-related competence protein ComEC\/Rec2\tK02238 comEC; competence protein ComEC" }, { "name":"RHO11_13480 type IV secretion system protein\tK03201 virB6; type IV secretion system protein VirB6" }, { "name":"RHO11_05285 ParA family protein\tK12055 K12055; chromosome partitioning related protein ParA" }, { "name":"RHO11_04755 mobH; (GenBank) MobH family relaxase\tK12070 traI; conjugal transfer pilus assembly protein TraI" }, { "name":"RHO11_09600 dsbC; (GenBank) bifunctional protein-disulfide isomerase\/oxidoreductase DsbC\tK03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]" }, { "name":"RHO11_00750 autotransporter outer membrane beta-barrel domain-containing protein\tK12678 aidA-I; autotransporter family porin" }, { "name":"RHO11_10240 autotransporter outer membrane beta-barrel domain-containing protein\tK12678 aidA-I; autotransporter family porin" }, { "name":"RHO11_11445 ImcF-related family protein\tK11891 impL; type VI secretion system protein ImpL" }, { "name":"RHO11_11390 tssL; (GenBank) type VI secretion system protein TssL, short form\tK11892 impK; type VI secretion system protein ImpK" }, { "name":"RHO11_11385 tssK; (GenBank) type VI secretion system baseplate subunit TssK\tK11893 impJ; type VI secretion system protein ImpJ" }, { "name":"RHO11_11460 tssG; (GenBank) type VI secretion system baseplate subunit TssG\tK11895 impH; type VI secretion system protein ImpH" }, { "name":"RHO11_11455 tssF; (GenBank) type VI secretion system baseplate subunit TssF\tK11896 impG; type VI secretion system protein ImpG" }, { "name":"RHO11_11380 tssC; (GenBank) type VI secretion system contractile sheath large subunit\tK11900 impC; type VI secretion system protein ImpC" }, { "name":"RHO11_11375 tssB; (GenBank) type VI secretion system contractile sheath small subunit\tK11901 impB; type VI secretion system protein ImpB" }, { "name":"RHO11_11400 Hcp family type VI secretion system effector\tK11903 hcp; type VI secretion system secreted protein Hcp" }, { "name":"RHO11_05240 vgrG; (GenBank) type VI secretion system tip protein VgrG\tK11904 vgrG; type VI secretion system secreted protein VgrG" }, { "name":"RHO11_11410 vgrG; (GenBank) type VI secretion system tip protein VgrG\tK11904 vgrG; type VI secretion system secreted protein VgrG" }, { "name":"RHO11_11470 tssE; (GenBank) type VI secretion system baseplate subunit TssE\tK11905 K11905; type VI secretion system protein" }, { "name":"RHO11_11465 tssJ; (GenBank) type VI secretion system lipoprotein TssJ\tK11906 vasD; type VI secretion system protein VasD" }, { "name":"RHO11_11405 tssH; (GenBank) type VI secretion system ATPase TssH\tK11907 vasG; type VI secretion system protein VasG" }, { "name":"RHO11_11450 tssA; (GenBank) type VI secretion system protein TssA\tK11910 vasJ; type VI secretion system protein VasJ" }, { "name":"RHO11_02730 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_06440 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_06455 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_06460 hypothetical protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_10250 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_10265 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_10260 molecular chaperone\tK07346 fimC; fimbrial chaperone protein" }, { "name":"RHO11_06450 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" }, { "name":"RHO11_10255 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" }, { "name":"RHO11_06205 fimbria\/pilus outer membrane usher protein\tK12518 papC; outer membrane usher protein PapC" }, { "name":"RHO11_06200 fimbria\/pilus periplasmic chaperone\tK12519 papD; chaperone protein PapD" }, { "name":"RHO11_06975 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"RHO11_08335 secB; (GenBank) protein-export chaperone SecB\tK03071 secB; preprotein translocase subunit SecB" }, { "name":"RHO11_09900 secD; (GenBank) protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"RHO11_11095 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"RHO11_09895 secF; (GenBank) protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"RHO11_07510 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"RHO11_10140 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"RHO11_07085 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"RHO11_09225 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"RHO11_09905 yajC; (GenBank) preprotein translocase subunit YajC\tK03210 yajC; preprotein translocase subunit YajC" }, { "name":"RHO11_12230 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"RHO11_13055 tatA; (GenBank) twin-arginine translocase TatA\/TatE family subunit\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"RHO11_13060 tatB; (GenBank) Sec-independent protein translocase protein TatB\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"RHO11_13065 tatC; (GenBank) twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" } ] }, { "name":"02042 Bacterial toxins" }, { "name":"02022 Two-component system [BR:omo02022]", "children":[ { "name":"RHO11_02540 phoR; (GenBank) phosphate regulon sensor histidine kinase PhoR\tK07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]" }, { "name":"RHO11_02545 phoB; (GenBank) phosphate regulon transcriptional regulator PhoB\tK07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB" }, { "name":"RHO11_11315 ATP-binding protein\tK07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]" }, { "name":"RHO11_11320 winged helix-turn-helix domain-containing protein\tK07661 rstA; two-component system, OmpR family, response regulator RstA" }, { "name":"RHO11_08585 cpxA; (GenBank) envelope stress sensor histidine kinase CpxA\tK07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]" }, { "name":"RHO11_08590 response regulator\tK07662 cpxR; two-component system, OmpR family, response regulator CpxR" }, { "name":"RHO11_04145 creC; (GenBank) two-component system sensor histidine kinase CreC\tK07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]" }, { "name":"RHO11_04150 creB; (GenBank) two-component system response regulator CreB\tK07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB" }, { "name":"RHO11_08790 pmrB; (GenBank) two-component system sensor histidine kinase PmrB\tK07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]" }, { "name":"RHO11_08785 response regulator\tK07771 basR; two-component system, OmpR family, response regulator BasR" }, { "name":"RHO11_07415 heavy metal sensor histidine kinase\tK07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]" }, { "name":"RHO11_07410 heavy metal response regulator transcription factor\tK07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR" }, { "name":"RHO11_09325 qseC; (GenBank) quorum sensing histidine kinase QseC\tK07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]" }, { "name":"RHO11_09330 response regulator\tK07666 qseB; two-component system, OmpR family, response regulator QseB" }, { "name":"RHO11_08240 ATP-binding protein\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"RHO11_08245 response regulator transcription factor\tK02483 K02483; two-component system, OmpR family, response regulator" }, { "name":"RHO11_08680 narX; (GenBank) nitrate\/nitrite two-component system sensor histidine kinase NarX\tK07673 narX; two-component system, NarL family, nitrate\/nitrite sensor histidine kinase NarX [EC:2.7.13.3]" }, { "name":"RHO11_08675 narL; (GenBank) two-component system response regulator NarL\tK07684 narL; two-component system, NarL family, nitrate\/nitrite response regulator NarL" }, { "name":"RHO11_12550 sensor histidine kinase\tK07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]" }, { "name":"RHO11_12545 response regulator\tK07702 dpiA; two-component system, CitB family, response regulator CitB" }, { "name":"RHO11_00805 response regulator\tK11615 malR; two-component system, CitB family, response regulator MalR" }, { "name":"RHO11_05665 sensor histidine kinase\tK27882 btsS; two-component system, LytTR family, low-concentration pyruvate sensor kinase [EC:2.7.13.3]" }, { "name":"RHO11_05670 btsR; (GenBank) two-component system response regulator BtsR\tK27883 btsR; two-component system, LytTR family, low-concentration pyruvate response regulator" }, { "name":"RHO11_09445 glnL; (GenBank) nitrogen regulation protein NR(II)\tK07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]" }, { "name":"RHO11_09440 glnG; (GenBank) nitrogen regulation protein NR(I)\tK07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG" } ] }, { "name":"02035 Bacterial motility proteins [BR:omo02035]", "children":[ { "name":"RHO11_01505 PilT\/PilU family type 4a pilus ATPase\tK02669 pilT; twitching motility protein PilT" }, { "name":"RHO11_08225 hypothetical protein\tK02656 pilF; type IV pilus assembly protein PilF" }, { "name":"RHO11_02730 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_06440 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_06455 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_06460 hypothetical protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_10250 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_10265 fimbrial protein\tK07345 fimA; major type 1 subunit fimbrin (pilin)" }, { "name":"RHO11_10260 molecular chaperone\tK07346 fimC; fimbrial chaperone protein" }, { "name":"RHO11_06450 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" }, { "name":"RHO11_10255 fimbria\/pilus outer membrane usher protein\tK07347 fimD; outer membrane usher protein" } ] }, { "name":"03037 Cilium and associated proteins" }, { "name":"04812 Cytoskeleton proteins [BR:omo04812]", "children":[ { "name":"RHO11_08385 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"RHO11_05840 ftsZ; (GenBank) cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"RHO11_05845 ftsA; (GenBank) cell division protein FtsA\tK03590 ftsA; cell division protein FtsA" } ] }, { "name":"04147 Exosome [BR:omo04147]", "children":[ { "name":"RHO11_00635 htpG; (GenBank) molecular chaperone HtpG\tK04079 HSP90A; molecular chaperone HtpG" }, { "name":"RHO11_05105 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"RHO11_00675 gapA; (GenBank) glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"RHO11_08455 pgk; (GenBank) phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"RHO11_02200 pykF; (GenBank) pyruvate kinase PykF\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_04070 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"RHO11_09085 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" }, { "name":"RHO11_01110 peroxiredoxin C\tK03386 PRDX2_4; peroxiredoxin 2\/4 [EC:1.11.1.24]" }, { "name":"RHO11_10780 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"RHO11_08910 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"RHO11_09575 pgi; (GenBank) glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"RHO11_06125 guaB; (GenBank) IMP dehydrogenase\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"RHO11_11090 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"RHO11_11255 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"RHO11_03100 HIT domain-containing protein\tK02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]" }, { "name":"RHO11_00420 L-lactate dehydrogenase\tK00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]" }, { "name":"RHO11_12330 bile acid:sodium symporter family protein\tK14347 SLC10A7; solute carrier family 10 (sodium\/bile acid cotransporter), member 7" }, { "name":"RHO11_08770 adk; (GenBank) adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" }, { "name":"RHO11_01220 apt; (GenBank) adenine phosphoribosyltransferase\tK00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]" }, { "name":"RHO11_12635 argH; (GenBank) argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"RHO11_12630 argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"RHO11_03990 fbp; (GenBank) class 1 fructose-bisphosphatase\tK03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]" }, { "name":"RHO11_02770 galK; (GenBank) galactokinase\tK00849 galK; galactokinase [EC:2.7.1.6]" }, { "name":"RHO11_09450 glnA; (GenBank) glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"RHO11_12370 hemB; (GenBank) porphobilinogen synthase\tK01698 hemB; porphobilinogen synthase [EC:4.2.1.24]" }, { "name":"RHO11_07050 alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_13845 phoA; (GenBank) alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_09055 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"RHO11_08080 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"RHO11_00530 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"RHO11_06115 zwf; (GenBank) glucose-6-phosphate dehydrogenase\tK00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]" }, { "name":"RHO11_00485 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"RHO11_03465 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"RHO11_00405 lipocalin family protein\tK03098 APOD; apolipoprotein D and lipocalin family protein" } ] }, { "name":"02048 Prokaryotic defense system [BR:omo02048]", "children":[ { "name":"RHO11_04910 DUF3387 domain-containing protein\tK01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]" }, { "name":"RHO11_08010 Dam family site-specific DNA-(adenine-N6)-methyltransferase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" }, { "name":"RHO11_13195 DNA adenine methylase\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]" }, { "name":"RHO11_13285 site-specific DNA-methyltransferase\tK07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]" }, { "name":"RHO11_01055 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_01630 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_13510 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"RHO11_04375 DEAD\/DEAH box helicase family protein\tK01156 res; type III restriction enzyme [EC:3.1.21.5]" }, { "name":"RHO11_04380 site-specific DNA-methyltransferase\tK07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]" }, { "name":"RHO11_04865 type II toxin-antitoxin system RelB\/DinJ family antitoxin\tK18918 relB; RHH-type transcriptional regulator, rel operon repressor \/ antitoxin RelB" }, { "name":"RHO11_05745 YhcH\/YjgK\/YiaL family protein\tK19334 tabA; biofilm protein TabA" }, { "name":"RHO11_05840 ftsZ; (GenBank) cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"RHO11_08385 rod shape-determining protein\tK03569 mreB; rod shape-determining protein MreB and related proteins" }, { "name":"RHO11_06950 parC; (GenBank) DNA topoisomerase IV subunit A\tK02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]" }, { "name":"RHO11_06955 parE; (GenBank) DNA topoisomerase IV subunit B\tK02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]" }, { "name":"RHO11_08610 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"RHO11_03480 protein YgfX\tK19168 cptA; toxin CptA" }, { "name":"RHO11_03485 succinate dehydrogenase assembly factor 2\tK09159 cptB; antitoxin CptB" }, { "name":"RHO11_11835 IscS subfamily cysteine desulfurase\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" } ] }, { "name":"04030 G protein-coupled receptors" }, { "name":"04050 Cytokine receptors" }, { "name":"04054 Pattern recognition receptors" }, { "name":"03310 Nuclear receptors" }, { "name":"04040 Ion channels" }, { "name":"04031 GTP-binding proteins" }, { "name":"04052 Cytokines and neuropeptides" }, { "name":"04515 Cell adhesion molecules" }, { "name":"04090 CD molecules" }, { "name":"01504 Antimicrobial resistance genes [BR:omo01504]", "children":[ { "name":"RHO11_07415 heavy metal sensor histidine kinase\tK07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]" }, { "name":"RHO11_07410 heavy metal response regulator transcription factor\tK07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR" }, { "name":"RHO11_08625 VanW family protein\tK18346 vanW; vancomycin resistance protein VanW" }, { "name":"RHO11_00380 efflux RND transporter periplasmic adaptor subunit\tK03585 acrA; membrane fusion protein, multidrug efflux system" }, { "name":"RHO11_00375 efflux RND transporter permease subunit\tK18138 acrB; multidrug efflux pump" }, { "name":"RHO11_12825 tolC; (GenBank) outer membrane channel protein TolC\tK12340 tolC; outer membrane protein" } ] }, { "name":"00535 Proteoglycans" }, { "name":"00536 Glycosaminoglycan binding proteins" }, { "name":"00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:omo00537]", "children":[ { "name":"RHO11_07050 alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" }, { "name":"RHO11_13845 phoA; (GenBank) alkaline phosphatase\tK01077 ALP; alkaline phosphatase [EC:3.1.3.1]" } ] }, { "name":"04091 Lectins" }, { "name":"04990 Domain-containing proteins not elsewhere classified" } ] }, { "name":"09185 Viral protein families", "children":[ { "name":"03200 Viral proteins [BR:omo03200]", "children":[ { "name":"RHO11_01770 lysis system i-spanin subunit Rz\tK14744 rzpD; prophage endopeptidase [EC:3.4.-.-]" }, { "name":"RHO11_01985 lysis system i-spanin subunit Rz\tK14744 rzpD; prophage endopeptidase [EC:3.4.-.-]" }, { "name":"RHO11_13300 lysis protein\tK14744 rzpD; prophage endopeptidase [EC:3.4.-.-]" } ] }, { "name":"03210 Viral fusion proteins" } ] }, { "name":"09184 RNA family", "children":[ { "name":"03100 Non-coding RNAs [BR:omo03100]", "children":[ { "name":"RHO11_06890 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"RHO11_09890 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"RHO11_11685 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"RHO11_01575 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_04610 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_06730 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_06735 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_06740 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_13205 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"RHO11_00325 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"RHO11_06770 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"RHO11_03575 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"RHO11_11700 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"RHO11_03275 tRNA-Cys\tK14222 tRNA-Cys; tRNA Cys" }, { "name":"RHO11_06405 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"RHO11_06415 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"RHO11_08260 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"RHO11_12415 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"RHO11_03200 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_05175 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_07435 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_11080 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"RHO11_09545 tRNA-His\tK14226 tRNA-His; tRNA His" }, { "name":"RHO11_06895 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"RHO11_11680 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"RHO11_02130 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_03195 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_05170 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_06400 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_06410 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_07505 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"RHO11_01180 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"RHO11_04510 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"RHO11_12000 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"RHO11_03250 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_04955 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_06395 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_09115 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_12270 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"RHO11_10765 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"RHO11_07065 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"RHO11_09540 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"RHO11_04355 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_04385 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_06745 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_07695 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"RHO11_11070 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"RHO11_11085 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"RHO11_11705 tRNA-Trp\tK14235 tRNA-Trp; tRNA Trp" }, { "name":"RHO11_11075 tRNA-Tyr\tK14236 tRNA-Tyr; tRNA Tyr" }, { "name":"RHO11_01095 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"RHO11_12005 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"RHO11_12010 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"RHO11_06880 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_08250 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_11695 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_12425 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_12430 rrf; (GenBank) 5S ribosomal RNA\tK01985 5SrRNA; 5S ribosomal RNA" }, { "name":"RHO11_13175 ssrA; (GenBank) transfer-messenger RNA\tK15035 ssrA; transfer-messenger RNA" }, { "name":"RHO11_06100 ssrS; (GenBank) 6S RNA\tK28358 ssrS; RNA polymerase binding 6S RNA" } ] } ] } ] }, { "name":"09190 Not Included in Pathway or Brite", "children":[ { "name":"09191 Unclassified: metabolism", "children":[ { "name":"99980 Enzymes with EC numbers", "children":[ { "name":"RHO11_08070 idnO; (GenBank) gluconate 5-dehydrogenase\tK00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]" }, { "name":"RHO11_09050 gluconate 5-dehydrogenase\tK00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]" }, { "name":"RHO11_10830 gluconate 5-dehydrogenase\tK00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]" }, { "name":"RHO11_12150 SDR family oxidoreductase\tK00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]" }, { "name":"RHO11_12140 idnD; (GenBank) L-idonate 5-dehydrogenase\tK00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264]" }, { "name":"RHO11_00200 pdxA; (GenBank) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA\tK22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase \/ 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]" }, { "name":"RHO11_00595 pdxA; (GenBank) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA\tK22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase \/ 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]" }, { "name":"RHO11_08650 pdxA; (GenBank) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA\tK22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase \/ 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]" }, { "name":"RHO11_11970 NAD(P)-dependent oxidoreductase\tK08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411]" }, { "name":"RHO11_00370 mgrA; (GenBank) L-glyceraldehyde 3-phosphate reductase\tK19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]" }, { "name":"RHO11_11775 NADPH:quinone reductase\tK00344 qor; NADPH:quinone reductase [EC:1.6.5.5]" }, { "name":"RHO11_07325 NAD(P)H-dependent oxidoreductase\tK01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]" }, { "name":"RHO11_11260 FMN-dependent NADH-azoreductase\tK01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]" }, { "name":"RHO11_01285 ahpF; (GenBank) alkyl hydroperoxide reductase subunit F\tK03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]" }, { "name":"RHO11_02370 msrA; (GenBank) peptide-methionine (S)-S-oxide reductase MsrA\tK07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]" }, { "name":"RHO11_02355 msrB; (GenBank) peptide-methionine (R)-S-oxide reductase MsrB\tK07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]" }, { "name":"RHO11_03360 bcp; (GenBank) thioredoxin-dependent thiol peroxidase\tK03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]" }, { "name":"RHO11_04060 tpx; (GenBank) thiol peroxidase\tK11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]" }, { "name":"RHO11_01280 ahpC; (GenBank) alkyl hydroperoxide reductase subunit C\tK24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]" }, { "name":"RHO11_08185 pirin family protein\tK06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]" }, { "name":"RHO11_09070 ftnA; (GenBank) non-heme ferritin\tK02217 ftnA; ferritin [EC:1.16.3.2]" }, { "name":"RHO11_00685 arsC; (GenBank) arsenate reductase (glutaredoxin)\tK00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]" }, { "name":"RHO11_12385 nrdG; (GenBank) anaerobic ribonucleoside-triphosphate reductase-activating protein\tK04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]" }, { "name":"RHO11_07320 pflA; (GenBank) pyruvate formate lyase 1-activating protein\tK04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]" }, { "name":"RHO11_04325 protein-L-isoaspartate(D-aspartate) O-methyltransferase\tK00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]" }, { "name":"RHO11_11885 tehB; (GenBank) SAM-dependent methyltransferase TehB\tK16868 tehB; tellurite methyltransferase [EC:2.1.1.265]" }, { "name":"RHO11_03510 hutW; (GenBank) heme anaerobic degradation radical SAM methyltransferase ChuW\/HutW\tK21936 chuW; anaerobilin synthase [EC:2.1.1.342]" }, { "name":"RHO11_02460 sugar O-acetyltransferase\tK00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]" }, { "name":"RHO11_04285 lnt; (GenBank) apolipoprotein N-acyltransferase\tK03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]" }, { "name":"RHO11_00770 GNAT family N-acetyltransferase\tK03826 yiaB_C; [protein]-L-lysine N-acetyltransferase [EC:2.3.1.338]" }, { "name":"RHO11_06260 GNAT family N-acetyltransferase\tK03826 yiaB_C; [protein]-L-lysine N-acetyltransferase [EC:2.3.1.338]" }, { "name":"RHO11_13515 GNAT family N-acetyltransferase\tK03830 yafP; putative acetyltransferase [EC:2.3.1.-]" }, { "name":"RHO11_07370 GNAT family N-acetyltransferase\tK24117 scmL; S-(2-succino)cysteine N-acetyltransferase [EC:2.3.1.-]" }, { "name":"RHO11_00030 aat; (GenBank) leucyl\/phenylalanyl-tRNA--protein transferase\tK00684 aat; leucyl\/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]" }, { "name":"RHO11_06870 lgt; (GenBank) prolipoprotein diacylglyceryl transferase\tK13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]" }, { "name":"RHO11_11975 four-carbon acid sugar kinase family protein\tK21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]" }, { "name":"RHO11_00205 four-carbon acid sugar kinase family protein\tK22129 dtnK; D-threonate\/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]" }, { "name":"RHO11_00600 four-carbon acid sugar kinase family protein\tK22129 dtnK; D-threonate\/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]" }, { "name":"RHO11_08645 four-carbon acid sugar kinase family protein\tK22129 dtnK; D-threonate\/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]" }, { "name":"RHO11_11290 pfkB; (GenBank) 1-phosphofructokinase\tK25602 tagK; D-tagatose-1-phosphate kinase [EC:2.7.1.234]" }, { "name":"RHO11_00135 glnE; (GenBank) bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase\/[glutamate--ammonia-ligase] adenylyltransferase\tK00982 glnE; [glutamine synthetase] adenylyltransferase \/ [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]" }, { "name":"RHO11_03930 yfdE; (GenBank) CoA:oxalate CoA-transferase\tK18702 uctC; CoA:oxalate CoA-transferase [EC:2.8.3.19]" }, { "name":"RHO11_11330 alpha\/beta fold hydrolase\tK03928 yvaK; carboxylesterase [EC:3.1.1.1]" }, { "name":"RHO11_09790 carboxylesterase family protein\tK03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]" }, { "name":"RHO11_04545 ybgC; (GenBank) tol-pal system-associated acyl-CoA thioesterase\tK07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]" }, { "name":"RHO11_10500 thioesterase family protein\tK07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]" }, { "name":"RHO11_02075 PHP domain-containing protein\tK07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]" }, { "name":"RHO11_06045 sixA; (GenBank) phosphohistidine phosphatase SixA\tK08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]" }, { "name":"RHO11_02010 endonuclease\tK01150 endA; deoxyribonuclease I [EC:3.1.21.1]" }, { "name":"RHO11_03105 YchF\/TatD family DNA exonuclease\tK03424 tatD; TatD DNase family protein [EC:3.1.21.-]" }, { "name":"RHO11_06790 TatD family hydrolase\tK03424 tatD; TatD DNase family protein [EC:3.1.21.-]" }, { "name":"RHO11_07125 TatD family hydrolase\tK03424 tatD; TatD DNase family protein [EC:3.1.21.-]" }, { "name":"RHO11_01190 thermonuclease family protein\tK01174 nuc; micrococcal nuclease [EC:3.1.31.1]" }, { "name":"RHO11_05085 alpha\/beta fold hydrolase\tK01175 ybfF; esterase [EC:3.1.-.-]" }, { "name":"RHO11_01000 alpha\/beta hydrolase\tK11750 frsA; esterase FrsA [EC:3.1.-.-]" }, { "name":"RHO11_01765 lysozyme\tK01185 E3.2.1.17; lysozyme [EC:3.2.1.17]" }, { "name":"RHO11_01980 glycoside hydrolase family protein\tK01185 E3.2.1.17; lysozyme [EC:3.2.1.17]" }, { "name":"RHO11_03245 lysozyme\tK01185 E3.2.1.17; lysozyme [EC:3.2.1.17]" }, { "name":"RHO11_13295 lysozyme\tK01185 E3.2.1.17; lysozyme [EC:3.2.1.17]" }, { "name":"RHO11_10360 glycoside hydrolase family 88 protein\tK15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]" }, { "name":"RHO11_08940 def; (GenBank) peptide deformylase\tK01462 PDF; peptide deformylase [EC:3.5.1.88]" }, { "name":"RHO11_02685 carbon-nitrogen hydrolase family protein\tK11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]" }, { "name":"RHO11_12930 RidA family protein\tK09022 ridA; 2-iminobutanoate\/2-iminopropanoate deaminase [EC:3.5.99.10]" }, { "name":"RHO11_00130 CYTH domain-containing protein\tK18446 ygiF; triphosphatase [EC:3.6.1.25]" }, { "name":"RHO11_12790 nucleoside triphosphate pyrophosphatase\tK25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]" }, { "name":"RHO11_11980 aldolase\tK22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]" }, { "name":"RHO11_07055 fsa; (GenBank) fructose-6-phosphate aldolase\tK08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]" }, { "name":"RHO11_11755 csdA; (GenBank) cysteine desulfurase CsdA\tK01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]" }, { "name":"RHO11_10300 rhaM; (GenBank) L-rhamnose mutarotase\tK03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]" }, { "name":"RHO11_07995 gutQ; (GenBank) arabinose-5-phosphate isomerase GutQ\tK02467 gutQ; arabinose 5-phosphate isomerase [EC:5.3.1.13]" }, { "name":"RHO11_00190 triose-phosphate isomerase\tK21910 eryH; L-erythrulose 1-phosphate isomerase [EC:5.3.1.33]" }, { "name":"RHO11_11985 hydroxypyruvate isomerase family protein\tK22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]" }, { "name":"RHO11_09610 mpl; (GenBank) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase\tK02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]" }, { "name":"RHO11_09580 RnfABCDGE type electron transport complex subunit B\tK03616 rnfB; H+\/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]" }, { "name":"RHO11_06225 heavy metal translocating P-type ATPase\tK01534 zntA; Zn2+\/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]" }, { "name":"RHO11_03935 mgtA; (GenBank) magnesium-translocating P-type ATPase\tK01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]" } ] }, { "name":"99981 Carbohydrate metabolism", "children":[ { "name":"RHO11_11740 sfsA; (GenBank) DNA\/RNA nuclease SfsA\tK06206 sfsA; sugar fermentation stimulation protein A" } ] }, { "name":"99982 Energy metabolism", "children":[ { "name":"RHO11_03550 fdhD; (GenBank) formate dehydrogenase accessory sulfurtransferase FdhD\tK02379 fdhD; FdhD protein" }, { "name":"RHO11_06250 4Fe-4S dicluster domain-containing protein\tK05796 hydN; electron transport protein HydN" }, { "name":"RHO11_11840 iscU; (GenBank) Fe-S cluster assembly scaffold IscU\tK04488 iscU; nitrogen fixation protein NifU and related proteins" }, { "name":"RHO11_12860 fldA; (GenBank) flavodoxin FldA\tK03839 fldA; flavodoxin I" } ] }, { "name":"99983 Lipid metabolism" }, { "name":"99984 Nucleotide metabolism" }, { "name":"99985 Amino acid metabolism", "children":[ { "name":"RHO11_04005 cysZ; (GenBank) sulfate transporter CysZ\tK06203 cysZ; CysZ protein" }, { "name":"RHO11_01500 YggS family pyridoxal phosphate-dependent enzyme\tK06997 yggS; PLP dependent protein" }, { "name":"RHO11_09550 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha\tK26607 cyuA; putative L-cysteine desulfidase" } ] }, { "name":"99986 Glycan metabolism", "children":[ { "name":"RHO11_03115 lipopolysaccharide assembly protein LapA domain-containing protein\tK08992 lapA; lipopolysaccharide assembly protein A" }, { "name":"RHO11_03110 lapB; (GenBank) lipopolysaccharide assembly protein LapB\tK19804 lapB; lipopolysaccharide assembly protein B" } ] }, { "name":"99987 Cofactor metabolism", "children":[ { "name":"RHO11_00440 heme biosynthesis HemY N-terminal domain-containing protein\tK02498 hemY; HemY protein" }, { "name":"RHO11_13050 ubiB; (GenBank) ubiquinone biosynthesis regulatory protein kinase UbiB\tK03688 ubiB; ubiquinone biosynthesis protein" }, { "name":"RHO11_09015 mobB; (GenBank) molybdopterin-guanine dinucleotide biosynthesis protein B\tK03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein" }, { "name":"RHO11_02555 AbgT family transporter\tK12942 abgT; aminobenzoyl-glutamate transport protein" } ] }, { "name":"99988 Secondary metabolism", "children":[ { "name":"RHO11_09430 NAD(P)H-dependent oxidoreductase\tK19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)" } ] }, { "name":"99999 Others", "children":[ { "name":"RHO11_02800 DoxX family protein\tK15977 K15977; putative oxidoreductase" } ] } ] }, { "name":"09192 Unclassified: genetic information processing", "children":[ { "name":"99973 Transcription", "children":[ { "name":"RHO11_07010 transcriptional regulator GutM\tK02466 gutM; glucitol operon activator protein" }, { "name":"RHO11_00725 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"RHO11_03625 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"RHO11_09715 cold shock domain-containing protein\tK03704 cspA; cold shock protein" }, { "name":"RHO11_13455 antA\/AntB antirepressor family protein\tK07741 antB; anti-repressor protein" }, { "name":"RHO11_12195 glnK; (GenBank) P-II family nitrogen regulator\tK04752 glnK; nitrogen regulatory protein P-II 2" }, { "name":"RHO11_05820 Tex family protein\tK06959 tex; protein Tex" } ] }, { "name":"99974 Translation" }, { "name":"99975 Protein processing", "children":[ { "name":"RHO11_02195 META domain-containing protein\tK03668 hslJ; heat shock protein HslJ" }, { "name":"RHO11_13165 META domain-containing protein\tK03668 hslJ; heat shock protein HslJ" }, { "name":"RHO11_07865 tig; (GenBank) trigger factor\tK03545 tig; trigger factor" }, { "name":"RHO11_07200 fdhE; (GenBank) formate dehydrogenase accessory protein FdhE\tK02380 fdhE; FdhE protein" }, { "name":"RHO11_13135 smpB; (GenBank) SsrA-binding protein SmpB\tK03664 smpB; SsrA-binding protein" }, { "name":"RHO11_11715 YifB family Mg chelatase-like AAA ATPase\tK07391 comM; magnesium chelatase family protein" }, { "name":"RHO11_06160 OsmC family protein\tK07397 yhfA; putative redox protein" }, { "name":"RHO11_09095 nfuA; (GenBank) Fe-S biogenesis protein NfuA\tK07400 nfuA; Fe\/S biogenesis protein NfuA" } ] }, { "name":"99976 Replication and repair", "children":[ { "name":"RHO11_05080 MGMT family protein\tK07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein" }, { "name":"RHO11_10180 radC; (GenBank) DNA repair protein RadC\tK03630 radC; DNA repair protein RadC" }, { "name":"RHO11_00215 rmuC; (GenBank) DNA recombination protein RmuC\tK09760 rmuC; DNA recombination protein RmuC" }, { "name":"RHO11_05115 DUF2813 domain-containing protein\tK07459 ybjD; putative ATP-dependent endonuclease of the OLD family" }, { "name":"RHO11_06850 YraN family protein\tK07460 yraN; putative endonuclease" }, { "name":"RHO11_08945 dprA; (GenBank) DNA-processing protein DprA\tK04096 smf; DNA processing protein" }, { "name":"RHO11_06230 replication-associated recombination protein A\tK07478 ycaJ; putative ATPase" }, { "name":"RHO11_09820 primase-helicase zinc-binding domain-containing protein\tK06919 K06919; putative DNA primase\/helicase" }, { "name":"RHO11_01655 ribonuclease H-like domain-containing protein\tK07501 K07501; 3'-5' exonuclease" }, { "name":"RHO11_00740 helix-turn-helix domain-containing protein\tK07483 K07483; transposase" }, { "name":"RHO11_01035 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_01075 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_01960 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_01975 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_02115 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_02170 helix-turn-helix domain-containing protein\tK07483 K07483; transposase" }, { "name":"RHO11_02390 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_02455 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_03225 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_03260 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_03285 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_03800 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_04485 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_04920 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_05255 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_05330 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_05565 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_06425 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_06465 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_06480 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_07240 helix-turn-helix domain-containing protein\tK07483 K07483; transposase" }, { "name":"RHO11_07255 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_07485 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_07495 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_07685 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_08150 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_08575 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_09245 helix-turn-helix domain-containing protein\tK07483 K07483; transposase" }, { "name":"RHO11_09465 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_09730 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_10370 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_10455 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_10850 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_10905 helix-turn-helix domain-containing protein\tK07483 K07483; transposase" }, { "name":"RHO11_10980 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_12520 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_12955 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_13595 transposase\tK07483 K07483; transposase" }, { "name":"RHO11_00735 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_01040 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_01070 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_01080 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_01965 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_01970 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_02120 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_02165 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_02385 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_03230 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_03265 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_03805 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_04400 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_04480 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_04915 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_05250 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_05310 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_05570 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_05790 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_06475 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_06510 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_07480 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_07500 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_07680 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_08145 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_08570 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_09250 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_09470 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_09725 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_10460 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_10845 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_10900 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_10955 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_10985 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_11005 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_12135 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_12435 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_12515 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_12950 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_13590 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_13910 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_13925 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_13935 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"RHO11_06485 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10235 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10245 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10270 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10345 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10420 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10435 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10555 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10590 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10605 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10615 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10685 IS6 family transposase\tK07498 K07498; putative transposase" }, { "name":"RHO11_10690 DDE-type integrase\/transposase\/recombinase\tK07498 K07498; putative transposase" }, { "name":"RHO11_13180 site-specific integrase\tK14059 int; integrase" } ] }, { "name":"99979 Viral proteins" }, { "name":"99998 Others", "children":[ { "name":"RHO11_00700 YbaB\/EbfC family nucleoid-associated protein\tK09747 ebfC; nucleoid-associated protein EbfC" } ] } ] }, { "name":"09193 Unclassified: signaling and cellular processes", "children":[ { "name":"99977 Transport", "children":[ { "name":"RHO11_10625 glycoside-pentoside-hexuronide (GPH):cation symporter\tK03292 TC.GPH; glycoside\/pentoside\/hexuronide:cation symporter, GPH family" }, { "name":"RHO11_00615 sodium:solute symporter family protein\tK03307 TC.SSS; solute:Na+ symporter, SSS family" }, { "name":"RHO11_11550 amino acid carrier protein\tK03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family" }, { "name":"RHO11_01225 brnQ; (GenBank) branched-chain amino acid transport system II carrier protein\tK03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family" }, { "name":"RHO11_06785 bile acid:sodium symporter family protein\tK03453 TC.BASS; bile acid:Na+ symporter, BASS family" }, { "name":"RHO11_01365 cytosine permease\tK03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family" }, { "name":"RHO11_02405 NCS1 family transporter\tK03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family" } ] }, { "name":"99978 Cell growth", "children":[ { "name":"RHO11_12850 septation protein A\tK06190 ispZ; intracellular septation protein" }, { "name":"RHO11_10890 envC; (GenBank) murein hydrolase activator EnvC\tK22719 envC; murein hydrolase activator" } ] }, { "name":"99993 Cell motility", "children":[ { "name":"RHO11_03095 hypothetical protein\tK07337 K07337; penicillin-binding protein activator" }, { "name":"RHO11_09945 lpoB; (GenBank) penicillin-binding protein activator LpoB\tK07337 K07337; penicillin-binding protein activator" }, { "name":"RHO11_13545 TfoX\/Sxy family DNA transformation protein\tK07343 tfoX; DNA transformation protein and related proteins" }, { "name":"RHO11_06445 molecular chaperone\tK15540 ecpD; chaperone protein EcpD" }, { "name":"RHO11_09345 syd; (GenBank) SecY-interacting protein\tK15723 syd; SecY interacting protein Syd" } ] }, { "name":"99995 Signaling proteins", "children":[ { "name":"RHO11_07710 proQ; (GenBank) RNA chaperone ProQ\tK03607 proQ; ProP effector" }, { "name":"RHO11_12320 uspA; (GenBank) universal stress protein UspA\tK06149 uspA; universal stress protein A" }, { "name":"RHO11_04550 universal stress protein\tK11932 uspG; universal stress protein G" }, { "name":"RHO11_09030 typA; (GenBank) translational GTPase TypA\tK06207 typA; GTP-binding protein" }, { "name":"RHO11_11540 ACT domain-containing protein\tK07166 K07166; ACT domain-containing protein" }, { "name":"RHO11_09500 PhoH family protein\tK06217 phoH; phosphate starvation-inducible protein PhoH and related proteins" }, { "name":"RHO11_06385 TIGR04211 family SH3 domain-containing protein\tK07184 ygiM; SH3 domain protein" }, { "name":"RHO11_05560 YajQ family cyclic di-GMP-binding protein\tK09767 yajQ; cyclic-di-GMP-binding protein" } ] }, { "name":"99992 Structural proteins", "children":[ { "name":"RHO11_06235 lolA; (GenBank) outer membrane lipoprotein chaperone LolA\tK03634 lolA; outer membrane lipoprotein carrier protein" }, { "name":"RHO11_02030 lolB; (GenBank) lipoprotein insertase outer membrane protein LolB\tK02494 lolB; outer membrane lipoprotein LolB" }, { "name":"RHO11_04615 MlaA family lipoprotein\tK04754 mlaA; phospholipid-binding lipoprotein MlaA" }, { "name":"RHO11_06355 glycine zipper 2TM domain-containing protein\tK06077 slyB; outer membrane lipoprotein SlyB" }, { "name":"RHO11_07875 OmpH family outer membrane protein\tK06142 hlpA; outer membrane protein" }, { "name":"RHO11_03470 nlpD; (GenBank) murein hydrolase activator NlpD\tK06194 nlpD; lipoprotein NlpD" }, { "name":"RHO11_00580 nlpI; (GenBank) lipoprotein NlpI\tK05803 nlpI; lipoprotein NlpI" }, { "name":"RHO11_07575 hypothetical protein\tK07265 kpsS; capsular polysaccharide export protein" }, { "name":"RHO11_01125 OmpW family outer membrane protein\tK07275 ompW; outer membrane protein" }, { "name":"RHO11_07275 asmA; (GenBank) outer membrane assembly protein AsmA\tK07289 asmA; AsmA protein" }, { "name":"RHO11_05605 NfeD family protein\tK07340 ybbJ; inner membrane protein" }, { "name":"RHO11_00550 biotin\/lipoyl-binding protein\tK01993 ABC-2.TX; HlyD family secretion protein" }, { "name":"RHO11_02925 efflux RND transporter periplasmic adaptor subunit\tK01993 ABC-2.TX; HlyD family secretion protein" }, { "name":"RHO11_11110 efflux RND transporter periplasmic adaptor subunit\tK01993 ABC-2.TX; HlyD family secretion protein" }, { "name":"RHO11_05150 creD; (GenBank) cell envelope integrity protein CreD\tK06143 creD; inner membrane protein" } ] }, { "name":"99994 Others", "children":[ { "name":"RHO11_02515 phoU; (GenBank) phosphate signaling complex protein PhoU\tK02039 phoU; phosphate transport system protein" }, { "name":"RHO11_00975 cutC; (GenBank) copper homeostasis protein CutC\tK06201 cutC; copper homeostasis protein" }, { "name":"RHO11_05015 cyaY; (GenBank) iron donor protein CyaY\tK06202 cyaY; iron-sulfur cluster assembly protein CyaY" }, { "name":"RHO11_03505 hutX; (GenBank) heme utilization cystosolic carrier protein HutX\tK07227 chuX; heme iron utilization protein" } ] } ] }, { "name":"09194 Poorly characterized", "children":[ { "name":"99996 General function prediction only", "children":[ { "name":"RHO11_07810 CvpA family protein\tK03558 cvpA; membrane protein required for colicin V production" }, { "name":"RHO11_11230 phosphatase\tK04477 ycdX; putative hydrolase" }, { "name":"RHO11_08885 grcA; (GenBank) autonomous glycyl radical cofactor GrcA\tK06866 grcA; autonomous glycyl radical cofactor" }, { "name":"RHO11_03350 erpA; (GenBank) iron-sulfur cluster insertion protein ErpA\tK15724 erpA; iron-sulfur cluster insertion protein" }, { "name":"RHO11_08440 virulence factor BrkB family protein\tK07058 K07058; membrane protein" }, { "name":"RHO11_10770 FxsA family protein\tK07113 fxsA; UPF0716 protein FxsA" }, { "name":"RHO11_11750 csdE; (GenBank) cysteine desulfurase sulfur acceptor subunit CsdE\tK02426 sufE; cysteine desulfuration protein SufE" }, { "name":"RHO11_00465 hflD; (GenBank) high frequency lysogenization protein HflD\tK07153 hflD; high frequency lysogenization protein" }, { "name":"RHO11_11555 LemA family protein\tK03744 lemA; LemA protein" }, { "name":"RHO11_10175 SlyX family protein\tK03745 slyX; SlyX protein" }, { "name":"RHO11_12395 SprT family zinc-dependent metalloprotease\tK02742 sprT; SprT protein" }, { "name":"RHO11_08005 SPOR domain-containing protein\tK03112 damX; DamX protein" }, { "name":"RHO11_03160 ElyC\/SanA\/YdcF family protein\tK03748 sanA; SanA protein" }, { "name":"RHO11_07430 DUF1145 domain-containing protein\tK08993 yhhL; putative membrane protein" }, { "name":"RHO11_00535 DUF1440 domain-containing protein\tK08996 yagU; putative membrane protein" }, { "name":"RHO11_13830 DUF1440 domain-containing protein\tK08996 yagU; putative membrane protein" }, { "name":"RHO11_04115 YchJ family metal-binding protein\tK09858 K09858; SEC-C motif domain protein" }, { "name":"RHO11_03335 zinc ribbon domain-containing protein YjdM\tK06193 phnA; protein PhnA" } ] }, { "name":"99997 Function unknown", "children":[ { "name":"RHO11_02100 alpha\/beta hydrolase\tK06889 K06889; uncharacterized protein" }, { "name":"RHO11_06365 Bax inhibitor-1\/YccA family protein\tK06890 K06890; uncharacterized protein" }, { "name":"RHO11_13410 GPW\/gp25 family protein\tK06903 W; Bacteriophage baseplate protein W" }, { "name":"RHO11_13395 hypothetical protein\tK06905 D; Bacteriophage probable baseplate hub protein" }, { "name":"RHO11_13370 hypothetical protein\tK06907 FI; Bacteriophage tail sheath protein" }, { "name":"RHO11_13375 phage major tail tube protein\tK06908 FII; Bacteriophage tail tube protein" }, { "name":"RHO11_03340 DUF1289 domain-containing protein\tK06938 K06938; uncharacterized protein" }, { "name":"RHO11_12110 YkgJ family cysteine cluster protein\tK06940 K06940; uncharacterized protein" }, { "name":"RHO11_06170 HD domain-containing protein\tK06950 K06950; uncharacterized protein" }, { "name":"RHO11_09370 cation:dicarboxylase symporter family transporter\tK06956 K06956; uncharacterized protein" }, { "name":"RHO11_08605 GNAT family N-acetyltransferase\tK06975 K06975; uncharacterized protein" }, { "name":"RHO11_04965 VOC family protein\tK06996 K06996; uncharacterized protein" }, { "name":"RHO11_05750 DUF3413 domain-containing protein\tK07014 K07014; uncharacterized protein" }, { "name":"RHO11_08475 neutral zinc metallopeptidase\tK07054 K07054; uncharacterized protein" }, { "name":"RHO11_00115 TSUP family transporter\tK07090 K07090; uncharacterized protein" }, { "name":"RHO11_01420 metallophosphoesterase\tK07098 K07098; uncharacterized protein" }, { "name":"RHO11_02055 hypothetical protein\tK07112 K07112; uncharacterized protein" }, { "name":"RHO11_02060 YeeE\/YedE thiosulfate transporter family protein\tK07112 K07112; uncharacterized protein" }, { "name":"RHO11_04045 AbrB family transcriptional regulator\tK07120 K07120; uncharacterized protein" }, { "name":"RHO11_06855 penicillin-binding protein activator\tK07121 K07121; uncharacterized protein" }, { "name":"RHO11_01785 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_02095 SEL1-like repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_02855 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_04645 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_05260 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_07205 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_08200 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_08635 hypothetical protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_09460 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_10210 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_10425 SEL1-like repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_12045 tetratricopeptide repeat protein\tK07126 K07126; uncharacterized protein" }, { "name":"RHO11_02735 NAD(P)\/FAD-dependent oxidoreductase\tK07137 K07137; uncharacterized protein" }, { "name":"RHO11_11310 TIGR01212 family radical SAM protein\tK07139 K07139; uncharacterized protein" }, { "name":"RHO11_05130 YcbX family protein\tK07140 K07140; MOSC domain-containing protein" }, { "name":"RHO11_05035 DUF554 domain-containing protein\tK07150 K07150; uncharacterized protein" }, { "name":"RHO11_12225 yidD; (GenBank) membrane protein insertion efficiency factor YidD\tK08998 K08998; uncharacterized protein" }, { "name":"RHO11_11545 PFL family protein\tK09157 K09157; uncharacterized protein" }, { "name":"RHO11_09520 ybeD; (GenBank) DUF493 family protein YbeD\tK09158 K09158; uncharacterized protein" }, { "name":"RHO11_05720 YcgN family cysteine cluster protein\tK09160 K09160; uncharacterized protein" }, { "name":"RHO11_01995 DUF333 domain-containing protein\tK09712 K09712; uncharacterized protein" }, { "name":"RHO11_04165 YaiI\/YqxD family protein\tK09768 K09768; uncharacterized protein" }, { "name":"RHO11_03135 YbaN family protein\tK09790 K09790; uncharacterized protein" }, { "name":"RHO11_05350 Trm112 family protein\tK09791 K09791; uncharacterized protein" }, { "name":"RHO11_10895 divergent polysaccharide deacetylase family protein\tK09798 K09798; uncharacterized protein" }, { "name":"RHO11_13125 RnfH family protein\tK09801 K09801; uncharacterized protein" }, { "name":"RHO11_12745 tmaR; (GenBank) PTS system regulator TmaR\tK09802 K09802; uncharacterized protein" }, { "name":"RHO11_04105 VirK\/YbjX family protein\tK09824 virK; uncharacterized protein" }, { "name":"RHO11_09950 hypothetical protein\tK09859 K09859; uncharacterized protein" }, { "name":"RHO11_05645 yaaA; (GenBank) peroxide stress protein YaaA\tK09861 K09861; uncharacterized protein" }, { "name":"RHO11_06690 yacG; (GenBank) DNA gyrase inhibitor YacG\tK09862 K09862; uncharacterized protein" }, { "name":"RHO11_09395 DUF416 family protein\tK09891 K09891; uncharacterized protein" }, { "name":"RHO11_11940 yihI; (GenBank) Der GTPase-activating protein YihI\tK09894 K09894; uncharacterized protein" }, { "name":"RHO11_12455 YecA family protein\tK09895 K09895; uncharacterized protein" }, { "name":"RHO11_09005 YihD family protein\tK09896 K09896; uncharacterized protein" }, { "name":"RHO11_11710 DUF413 domain-containing protein\tK09897 K09897; uncharacterized protein" }, { "name":"RHO11_07905 YheU family protein\tK09898 K09898; uncharacterized protein" }, { "name":"RHO11_01550 yfbV; (GenBank) terminus macrodomain insulation protein YfbV\tK09899 K09899; uncharacterized protein" }, { "name":"RHO11_05730 YcgL domain-containing protein\tK09902 K09902; uncharacterized protein" }, { "name":"RHO11_07740 DUF1043 family protein\tK09908 K09908; uncharacterized protein" }, { "name":"RHO11_02995 matP; (GenBank) macrodomain Ter protein MatP\tK09911 K09911; uncharacterized protein" }, { "name":"RHO11_02860 DUF484 domain-containing protein\tK09921 K09921; uncharacterized protein" }, { "name":"RHO11_07290 DMT family protein\tK09922 K09922; uncharacterized protein" }, { "name":"RHO11_00410 YggL family protein\tK09923 K09923; uncharacterized protein" }, { "name":"RHO11_01440 YjfI family protein\tK09980 K09980; uncharacterized protein" } ] } ] } ] } ] }