{
	"name":"paj03400",
	"children":[
	{
		"name":"Eukaryotic type",
		"children":[
		{
			"name":"SSBR (single strand breaks repair)",
			"children":[
			{
				"name":"Direct repair",
				"children":[
				{
					"name":"PAJ_0513 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]"
				},
				{
					"name":"PAJ_0480 phrB; deoxyribodipyrimidine photo-lyase PhrB\tK01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]"
				}
				]
			},
			{
				"name":"BER (base exicision repair)",
				"children":[
				{
					"name":"DNA glycosylases",
					"children":[
					{
						"name":"PAJ_2195 ung; uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]"
					},
					{
						"name":"PAJ_2461 mutY; A\/G-specific adenine glycosylase MutY\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]"
					},
					{
						"name":"PAJ_1120 nth; endonuclease III Nth\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]"
					}
					]
				},
				{
					"name":"AP endonucleases"
				},
				{
					"name":"Long Patch-BER factors",
					"children":[
					{
						"name":"DNA polymerase delta complex"
					},
					{
						"name":"DNA polymerase epsilon complex"
					}
					]
				},
				{
					"name":"Short Patch-BER factors"
				},
				{
					"name":"Other BER factors"
				}
				]
			},
			{
				"name":"NER (nucleotide excision repair)",
				"children":[
				{
					"name":"GGR (global genome repair) factors",
					"children":[
					{
						"name":"XPC-HR23B-CETN2 complex"
					},
					{
						"name":"Cul4-DDB2 complex"
					},
					{
						"name":"NER4 complex"
					}
					]
				},
				{
					"name":"TCR (transcription coupled repair) factors",
					"children":[
					{
						"name":"DNA-directed RNA polymerase II complex"
					},
					{
						"name":"Cul4-CSA complex"
					},
					{
						"name":"Other TCR factor"
					}
					]
				},
				{
					"name":"TFIIH complex"
				},
				{
					"name":"RPA (replication factor A)"
				},
				{
					"name":"Other NER factors"
				}
				]
			},
			{
				"name":"MMR (mismatch excision repair)",
				"children":[
				{
					"name":"Mismatch and loop recognition factors"
				},
				{
					"name":"MutL homologs"
				},
				{
					"name":"DNA polymerase delta complex"
				},
				{
					"name":"RPA (replication factor A)"
				},
				{
					"name":"RFC (replication factor C)"
				},
				{
					"name":"Other MMR factors"
				}
				]
			}
			]
		},
		{
			"name":"DSBR (double strand breaks repair)",
			"children":[
			{
				"name":"HR (homologous recombination)",
				"children":[
				{
					"name":"MRN(MRX) complex"
				},
				{
					"name":"BRCA1-core complex"
				},
				{
					"name":"BRCA1-A complex"
				},
				{
					"name":"BRCA1-B complex"
				},
				{
					"name":"BRCA1-C complex"
				},
				{
					"name":"BRCA complex"
				},
				{
					"name":"RecA family proteins"
				},
				{
					"name":"Rad52 family proteins"
				},
				{
					"name":"Rad54 family proteins"
				},
				{
					"name":"RecQ family DNA helicases"
				},
				{
					"name":"Bloom's syndrome complex (BTR)"
				},
				{
					"name":"RPA (replication factor A)"
				},
				{
					"name":"Protein phosphatase 4"
				},
				{
					"name":"AP-5 complex"
				},
				{
					"name":"SMC5-SMC6 complex"
				},
				{
					"name":"Other HR factors"
				}
				]
			},
			{
				"name":"NHEJ (non-homologous end-joining)",
				"children":[
				{
					"name":"DNA-PK complex"
				},
				{
					"name":"MRX complex"
				},
				{
					"name":"DNA Ligase 4 complex"
				},
				{
					"name":"X-family DNA polymerases"
				},
				{
					"name":"Other NHEJ factors"
				}
				]
			},
			{
				"name":"FA (Fanconi anemia) pathway",
				"children":[
				{
					"name":"FA core complex"
				},
				{
					"name":"FA core complex binding factors"
				},
				{
					"name":"Bloom's syndrome complex (BTR)"
				},
				{
					"name":"FANCD2-I complex"
				},
				{
					"name":"Downstream FA components"
				},
				{
					"name":"Other FA pathway factors"
				}
				]
			},
			{
				"name":"Other DSBR factors",
				"children":[
				{
					"name":"Protein phosphatase 6"
				},
				{
					"name":"Ubiquitin ligases"
				},
				{
					"name":"Others"
				}
				]
			}
			]
		},
		{
			"name":"TLS (translesion DNA synthesis) factors",
			"children":[
			{
				"name":"Y-family DNA polymerases"
			},
			{
				"name":"B-family DNA polymerases"
			},
			{
				"name":"A-family DNA polymerase"
			},
			{
				"name":"Rad6 epistasis group"
			},
			{
				"name":"Other TLS factors"
			}
			]
		},
		{
			"name":"Check point factors",
			"children":[
			{
				"name":"Rad9-Hus1-Rad1 complex"
			},
			{
				"name":"HRAD17(Rad24)-RFC complex"
			},
			{
				"name":"Rad17-Mec3-Ddc1 complex"
			},
			{
				"name":"FPC (fork protection complex)"
			},
			{
				"name":"Triple T complex"
			},
			{
				"name":"BAG6-UBL4A-GET4 complex"
			},
			{
				"name":"SOSS complex"
			},
			{
				"name":"Other check point factors"
			}
			]
		},
		{
			"name":"Other factors with a suspected DNA repair function",
			"children":[
			{
				"name":"DNA polymerases"
			},
			{
				"name":"Nucleases"
			},
			{
				"name":"Helicases"
			},
			{
				"name":"PSO4 complex"
			},
			{
				"name":"Modulation of nucleotide pools",
				"children":[
				{
					"name":"PAJ_0076 mutT; mutator MutT protein MutT\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]"
				},
				{
					"name":"PAJ_3124 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]"
				}
				]
			}
			]
		}
		]
	},
	{
		"name":"Prokaryotic type",
		"children":[
		{
			"name":"SSBR (single strand breaks repair)",
			"children":[
			{
				"name":"Direct repair",
				"children":[
				{
					"name":"PAJ_0513 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]"
				},
				{
					"name":"PAJ_0480 phrB; deoxyribodipyrimidine photo-lyase PhrB\tK01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]"
				},
				{
					"name":"PAJ_1891 alkB; alkylated DNA repair protein AlkB\tK03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]"
				}
				]
			},
			{
				"name":"BER (base exicision repair)",
				"children":[
				{
					"name":"DNA glycosylases",
					"children":[
					{
						"name":"PAJ_2195 ung; uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]"
					},
					{
						"name":"PAJ_2636 mug; G\/U mismatch-specific DNA glycosylase Mug\tK03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]"
					},
					{
						"name":"PAJ_0933 uracil-DNA glycosylase family protein hypothetical protein\tK21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]"
					},
					{
						"name":"PAJ_2499 uracil-DNA glycosylase family protein\tK21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]"
					},
					{
						"name":"PAJ_0512 ada; putative ADA regulatory protein Ada\tK13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response \/ DNA-3-methyladenine glycosylase II [EC:3.2.2.21]"
					},
					{
						"name":"PAJ_2461 mutY; A\/G-specific adenine glycosylase MutY\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]"
					},
					{
						"name":"PAJ_3231 tag; DNA-3-methyladenine glycosylase I Tag\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]"
					},
					{
						"name":"PAJ_3119 mutM; formamidopyrimidine-DNA glycosylase MutM\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]"
					},
					{
						"name":"PAJ_0488 nei; endonuclease VIII Nei\tK05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]"
					},
					{
						"name":"PAJ_1120 nth; endonuclease III Nth\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]"
					}
					]
				},
				{
					"name":"AP endonucleases",
					"children":[
					{
						"name":"PAJ_1422 xthA; exodeoxyribonuclease III XthA\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]"
					},
					{
						"name":"PAJ_1849 nfo; probable endonuclease IV Nfo\tK01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]"
					},
					{
						"name":"PAJ_3384 nfi; endonuclease V Nfi\tK05982 nfi; deoxyribonuclease V [EC:3.1.21.7]"
					}
					]
				},
				{
					"name":"RecJ",
					"children":[
					{
						"name":"PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
					}
					]
				},
				{
					"name":"DNA ligase",
					"children":[
					{
						"name":"PAJ_2044 ligA; DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					},
					{
						"name":"PAJ_3138 yicF; DNA ligase YicF\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					}
					]
				},
				{
					"name":"DNA polymerase I",
					"children":[
					{
						"name":"PAJ_3158 polA; DNA polymerase I PolA\tK02335 polA; DNA polymerase I [EC:2.7.7.7]"
					}
					]
				}
				]
			},
			{
				"name":"NER (nucleotide excision repair)",
				"children":[
				{
					"name":"GGR (global genome repair) factors",
					"children":[
					{
						"name":"PAJ_3431 uvrA; UvrABC system protein A UvrA\tK03701 uvrA; excinuclease ABC subunit A"
					},
					{
						"name":"PAJ_0540 uvrB; UvrABC system protein B UvrB\tK03702 uvrB; excinuclease ABC subunit B"
					},
					{
						"name":"PAJ_0743 uvrC; UvrABC system protein C UvrC\tK03703 uvrC; excinuclease ABC subunit C"
					},
					{
						"name":"PAJ_1030 cho; exconuclease Cho\tK05984 cho; excinuclease Cho [EC:3.1.25.-]"
					},
					{
						"name":"PAJ_3329 uvrD; DNA helicase II UvrD\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]"
					},
					{
						"name":"PAJ_3158 polA; DNA polymerase I PolA\tK02335 polA; DNA polymerase I [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_2044 ligA; DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					},
					{
						"name":"PAJ_3138 yicF; DNA ligase YicF\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					}
					]
				},
				{
					"name":"TCR (transcription coupled repair) factors",
					"children":[
					{
						"name":"DNA-directed RNA polymerase complex (RNAP)",
						"children":[
						{
							"name":"PAJ_3376 rpoB; DNA-directed RNA polymerase beta chain RpoB\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]"
						},
						{
							"name":"PAJ_3377 rpoC; DNA-directed RNA polymerase beta' chain RpoC\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]"
						},
						{
							"name":"PAJ_2821 rpoA; DNA-directed RNA polymerase alpha chain RpoA\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]"
						},
						{
							"name":"PAJ_3140 rpoZ; DNA-directed RNA polymerase omega chain RpoZ\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]"
						}
						]
					},
					{
						"name":"TRCF (transcription-repair coupling factor)",
						"children":[
						{
							"name":"PAJ_0849 mfd; transcription-repair coupling factor Mfd\tK03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]"
						}
						]
					}
					]
				}
				]
			},
			{
				"name":"MMR (mismatch excision repair)",
				"children":[
				{
					"name":"Mismatch and loop recognition factors",
					"children":[
					{
						"name":"PAJ_2314 mutS; DNA mismatch repair protein MutS\tK03555 mutS; DNA mismatch repair protein MutS"
					}
					]
				},
				{
					"name":"Molecular matchmaker",
					"children":[
					{
						"name":"PAJ_2766 mutL; DNA mismatch repair protein MutL\tK03572 mutL; DNA mismatch repair protein MutL"
					}
					]
				},
				{
					"name":"Strand discrimination factor",
					"children":[
					{
						"name":"PAJ_2393 mutH; DNA mismatch repair protein MutH\tK03573 mutH; DNA mismatch repair protein MutH"
					}
					]
				},
				{
					"name":"DNA exonucleases",
					"children":[
					{
						"name":"PAJ_1751 sbcB; exodeoxyribonuclease I SbcB\tK01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]"
					},
					{
						"name":"PAJ_2138 xseA; probable exodeoxyribonuclease VII large subunit XseA\tK03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]"
					},
					{
						"name":"PAJ_0304 xseB; probable exodeoxyribonuclease VII small subunit XseB\tK03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]"
					},
					{
						"name":"PAJ_1500 exoX; exodeoxyribonuclease X exoX\tK10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]"
					}
					]
				},
				{
					"name":"DNA polymerase III holoenzyme",
					"children":[
					{
						"name":"PAJ_0154 dnaE; DNA polymerase III alpha subunit DnaE\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_3250 dnaN; DNA polymerase III beta subunit DnaN\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_3643 holC; DNA polymerase III chi subunit HolC\tK02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_0449 holA; DNA polymerase III delta subunit HolA\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_0835 holB; DNA polymerase III delta' subunit HolB\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_0176 dnaQ; DNA polymerase III epsilon subunit DnaQ\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_0354 dnaX; DNA polymerase III tau subunit DnaX\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_3750 holD; DNA polymerase III psi subunit HolD\tK02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]"
					},
					{
						"name":"PAJ_1499 holE; DNA polymerase III theta subunit HolE\tK02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]"
					}
					]
				},
				{
					"name":"DNA ligase",
					"children":[
					{
						"name":"PAJ_2044 ligA; DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					},
					{
						"name":"PAJ_3138 yicF; DNA ligase YicF\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
					}
					]
				},
				{
					"name":"Other MMR factors",
					"children":[
					{
						"name":"PAJ_3329 uvrD; DNA helicase II UvrD\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]"
					},
					{
						"name":"PAJ_3432 ssb; single-strand binding protein Ssb\tK03111 ssb; single-strand DNA-binding protein"
					},
					{
						"name":"PAJ_2890 dam; DNA adenine methylase Dam\tK06223 dam; DNA adenine methylase [EC:2.1.1.72]"
					},
					{
						"name":"PAJ_1627 vsr; very short patch repair protein Vsr\tK07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]"
					}
					]
				}
				]
			}
			]
		},
		{
			"name":"DSBR (double strand breaks repair)",
			"children":[
			{
				"name":"HR (homologous recombination)",
				"children":[
				{
					"name":"RecBC pathway proteins",
					"children":[
					{
						"name":"PAJ_2382 recB; exodeoxyribonuclease V beta chain RecB\tK03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]"
					},
					{
						"name":"PAJ_2384 recC; exodeoxyribonuclease V gamma chain RecC\tK03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]"
					},
					{
						"name":"PAJ_2381 recD; exodeoxyribonuclease V alpha chain RecD\tK03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]"
					},
					{
						"name":"PAJ_2309 recA; protein RecA\tK03553 recA; recombination protein RecA"
					},
					{
						"name":"PAJ_1515 ruvA; Holliday junction DNA helicase RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA"
					},
					{
						"name":"PAJ_1514 ruvB; Holliday junction DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]"
					},
					{
						"name":"PAJ_1516 ruvC; Crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]"
					},
					{
						"name":"PAJ_3070 priA; primosomal protein N' PriA\tK04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]"
					},
					{
						"name":"PAJ_2750 priB; primosomal replication protein Prib\tK02686 priB; primosomal replication protein N"
					},
					{
						"name":"PAJ_0351 priC; primosomal replication protein N' PriC\tK04067 priC; primosomal replication protein N''"
					},
					{
						"name":"PAJ_3229 dnaT; primosomal protein I DnaT\tK02317 dnaT; DNA replication protein DnaT"
					},
					{
						"name":"PAJ_1751 sbcB; exodeoxyribonuclease I SbcB\tK01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]"
					},
					{
						"name":"PAJ_0276 sbcC; exonuclease SbcC\tK03546 sbcC; DNA repair protein SbcC\/Rad50"
					},
					{
						"name":"PAJ_0277 sbcD; nuclease SbcCD subunit D\tK03547 sbcD; DNA repair protein SbcD\/Mre11"
					}
					]
				},
				{
					"name":"RecFOR pathway proteins",
					"children":[
					{
						"name":"PAJ_2309 recA; protein RecA\tK03553 recA; recombination protein RecA"
					},
					{
						"name":"PAJ_3755 radA; DNA repair protein RadA\tK04485 radA; DNA repair protein RadA\/Sms"
					},
					{
						"name":"PAJ_3249 recF; DNA replication and repair protein RecF\tK03629 recF; DNA replication and repair protein RecF"
					},
					{
						"name":"PAJ_3144 recG; ATP-dependent DNA helicase RecG\tK03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]"
					},
					{
						"name":"PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
					},
					{
						"name":"PAJ_2182 recO; DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)"
					},
					{
						"name":"PAJ_0356 recR; recombination protein RecR\tK06187 recR; recombination protein RecR"
					},
					{
						"name":"PAJ_2198 recN; DNA repair protein RecN\tK03631 recN; DNA repair protein RecN (Recombination protein N)"
					},
					{
						"name":"PAJ_0273 rdgC; recombination associated protein RdgC\tK03554 rdgC; recombination associated protein RdgC"
					},
					{
						"name":"PAJ_1515 ruvA; Holliday junction DNA helicase RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA"
					},
					{
						"name":"PAJ_1514 ruvB; Holliday junction DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]"
					},
					{
						"name":"PAJ_1516 ruvC; Crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]"
					}
					]
				},
				{
					"name":"AddAB pathway proteins"
				},
				{
					"name":"Other HR factor",
					"children":[
					{
						"name":"PAJ_1871 yejH; helicase YejH\tK19789 radD; DNA repair protein RadD"
					}
					]
				},
				{
					"name":"Archaeal homologous recombinant proteins",
					"children":[
					{
						"name":"PAJ_0276 sbcC; exonuclease SbcC\tK03546 sbcC; DNA repair protein SbcC\/Rad50"
					},
					{
						"name":"PAJ_0277 sbcD; nuclease SbcCD subunit D\tK03547 sbcD; DNA repair protein SbcD\/Mre11"
					},
					{
						"name":"PAJ_3659 yjgR; ATPase YjgR\tK06915 herA; DNA double-strand break repair helicase HerA and related ATPase"
					}
					]
				}
				]
			},
			{
				"name":"NHEJ (non-homologous end-joining)",
				"children":[
				{
					"name":"Two-component NHEJ DNA repair complex"
				},
				{
					"name":"SHIIR (short-homology-independent illegitimate recombination)",
					"children":[
					{
						"name":"Facilitator",
						"children":[
						{
							"name":"PAJ_1902 gyrA; DNA gyrase subunit A GyrA\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]"
						},
						{
							"name":"PAJ_3248 gyrB; DNA gyrase subunit B GyrB\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]"
						},
						{
							"name":"PAJ_1379 topA; DNA topoisomerase I TopA\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]"
						}
						]
					},
					{
						"name":"Supressor",
						"children":[
						{
							"name":"PAJ_3386 hupA; DNA-binding protein HU-alpha HupA\tK05787 hupA; DNA-binding protein HU-alpha"
						},
						{
							"name":"PAJ_0326 hupB; DNA-binding protein HU-beta HupB\tK03530 hupB; DNA-binding protein HU-beta"
						}
						]
					}
					]
				},
				{
					"name":"SHDIR (short-homology-dependent illegitimate recombination)",
					"children":[
					{
						"name":"RecET pathway",
						"children":[
						{
							"name":"PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ\tK07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]"
						},
						{
							"name":"PAJ_2182 recO; DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)"
						},
						{
							"name":"PAJ_0356 recR; recombination protein RecR\tK06187 recR; recombination protein RecR"
						},
						{
							"name":"PAJ_2044 ligA; DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
						},
						{
							"name":"PAJ_3138 yicF; DNA ligase YicF\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]"
						}
						]
					},
					{
						"name":"Facilitator",
						"children":[
						{
							"name":"PAJ_2802 fis; DNA-binding protein Fis\tK03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein"
						},
						{
							"name":"PAJ_1049 ihfA; integration host factor alpha-subunit IhfA\tK04764 ihfA; integration host factor subunit alpha"
						},
						{
							"name":"PAJ_0677 ihfB; integration host factor beta-subunit IhfB\tK05788 ihfB; integration host factor subunit beta"
						}
						]
					},
					{
						"name":"Supressor",
						"children":[
						{
							"name":"PAJ_1751 sbcB; exodeoxyribonuclease I SbcB\tK01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]"
						},
						{
							"name":"PAJ_3337 recQ; ATP-dependent DNA helicase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]"
						},
						{
							"name":"PAJ_3431 uvrA; UvrABC system protein A UvrA\tK03701 uvrA; excinuclease ABC subunit A"
						},
						{
							"name":"PAJ_0540 uvrB; UvrABC system protein B UvrB\tK03702 uvrB; excinuclease ABC subunit B"
						},
						{
							"name":"PAJ_0612 hns; DNA-binding protein H-NS Hns\tK03746 hns; DNA-binding protein H-NS"
						},
						{
							"name":"PAJ_1413 hns; DNA-binding protein H-NS Hns\tK03746 hns; DNA-binding protein H-NS"
						},
						{
							"name":"PAJ_p0052 hns; DNA-binding protein HNS\tK03746 hns; DNA-binding protein H-NS"
						}
						]
					}
					]
				}
				]
			}
			]
		},
		{
			"name":"TLS (translesion DNA synthesis) factors",
			"children":[
			{
				"name":"Y-family DNA polymerases",
				"children":[
				{
					"name":"PAJ_0215 dinB; DNA polymerase IV DinB\tK02346 dinB; DNA polymerase IV [EC:2.7.7.7]"
				},
				{
					"name":"PAJ_0773 umuC; DNA polymerase V subunit UmuC\tK03502 umuC; DNA polymerase V"
				},
				{
					"name":"PAJ_1106 umuC; nucleotidyl transferase\/DNA polymerase DNA repair protein UmuC\tK03502 umuC; DNA polymerase V"
				},
				{
					"name":"PAJ_2530 umuC; protein UmuC\tK03502 umuC; DNA polymerase V"
				},
				{
					"name":"PAJ_1105 umuD; SOS-response transcriptional repressor UmuD\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]"
				},
				{
					"name":"PAJ_2523 UV protection protein\tK03503 umuD; DNA polymerase V [EC:3.4.21.-]"
				}
				]
			},
			{
				"name":"Other SOS response factors",
				"children":[
				{
					"name":"PAJ_2309 recA; protein RecA\tK03553 recA; recombination protein RecA"
				},
				{
					"name":"PAJ_3416 lexA; LexA repressor LexA\tK01356 lexA; repressor LexA [EC:3.4.21.88]"
				},
				{
					"name":"PAJ_2198 recN; DNA repair protein RecN\tK03631 recN; DNA repair protein RecN (Recombination protein N)"
				},
				{
					"name":"PAJ_0037 polB; DNA polymerase II PolB\tK02336 polB; DNA polymerase II [EC:2.7.7.7]"
				},
				{
					"name":"PAJ_3432 ssb; single-strand binding protein Ssb\tK03111 ssb; single-strand DNA-binding protein"
				},
				{
					"name":"PAJ_0798 dinI; DNA-damage-inducible protein I DinI\tK12149 dinI; DNA-damage-inducible protein I"
				},
				{
					"name":"PAJ_2308 recX; regulatory protein RecX\tK03565 recX; regulatory protein"
				}
				]
			}
			]
		},
		{
			"name":"Other factors with a suspected DNA repair function",
			"children":[
			{
				"name":"DNA polymerase"
			},
			{
				"name":"DNA helicases",
				"children":[
				{
					"name":"PAJ_3302 rep; ATP-dependent DNA helicase Rep\tK03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]"
				},
				{
					"name":"PAJ_0721 helD; helicase IV HelD\tK03658 helD; DNA helicase IV [EC:5.6.2.4]"
				},
				{
					"name":"PAJ_0579 dinG; probable ATP-dependent helicase DinG\tK03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]"
				},
				{
					"name":"PAJ_1456 yoaA; probable ATP-dependent helicase YoaA\tK03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]"
				}
				]
			},
			{
				"name":"Modulation of nucleotide pools",
				"children":[
				{
					"name":"PAJ_0076 mutT; mutator MutT protein MutT\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]"
				},
				{
					"name":"PAJ_3124 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]"
				},
				{
					"name":"PAJ_1904 nrdA; ribonucleoside-diphosphate reductase 1 alpha subunit NrdA\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]"
				},
				{
					"name":"PAJ_2265 nrdE; ribonucleoside-diphosphate reductase 2 alpha subunit NrdE\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]"
				},
				{
					"name":"PAJ_1905 nrdB; ribonucleoside-diphosphate reductase 1 beta subunit NrdB\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]"
				},
				{
					"name":"PAJ_2266 nrdF; ribonucleoside-diphosphate reductase 2 beta subunit NrdF\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]"
				}
				]
			},
			{
				"name":"Others"
			}
			]
		}
		]
	}
	]
}