{
	"name":"pti03021",
	"children":[
	{
		"name":"Eukaryotic type",
		"children":[
		{
			"name":"RNA polymerase II system",
			"children":[
			{
				"name":"RNA polymerase II",
				"children":[
				{
					"name":"Core subunits",
					"children":[
					{
						"name":"PHATRDRAFT_15555 hypothetical protein\tK03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]"
					},
					{
						"name":"PHATRDRAFT_11441 hypothetical protein\tK03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]"
					},
					{
						"name":"PHATRDRAFT_13566 hypothetical protein\tK03011 RPB3; DNA-directed RNA polymerase II subunit RPB3"
					},
					{
						"name":"PHATRDRAFT_47430 hypothetical protein\tK03008 RPB11; DNA-directed RNA polymerase II subunit RPB11"
					}
					]
				},
				{
					"name":"Pol II specific subunits",
					"children":[
					{
						"name":"PHATR_46699 hypothetical protein\tK03012 RPB4; DNA-directed RNA polymerase II subunit RPB4"
					},
					{
						"name":"PHATRDRAFT_35680 RNAP-II_3; hypothetical protein\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7"
					},
					{
						"name":"PHATRDRAFT_24922 hypothetical protein\tK03017 RPB9; DNA-directed RNA polymerase II subunit RPB9"
					}
					]
				},
				{
					"name":"Pol I, II, III common subunits",
					"children":[
					{
						"name":"PHATRDRAFT_25420 hypothetical protein\tK03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1"
					},
					{
						"name":"PHATRDRAFT_10148 hypothetical protein\tK03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2"
					},
					{
						"name":"PHATRDRAFT_22597 hypothetical protein\tK03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3"
					},
					{
						"name":"PHATRDRAFT_10821 hypothetical protein\tK03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5"
					}
					]
				},
				{
					"name":"Pol IV and V specific subunits"
				}
				]
			},
			{
				"name":"Basal transcription factors",
				"children":[
				{
					"name":"TFIIA"
				},
				{
					"name":"TFIIB"
				},
				{
					"name":"TFIID",
					"children":[
					{
						"name":"PHATR_10199 hypothetical protein\tK03120 TBP; transcription initiation factor TFIID TATA-box-binding protein"
					},
					{
						"name":"PHATRDRAFT_42944 hypothetical protein\tK03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]"
					},
					{
						"name":"PHATRDRAFT_45009 hypothetical protein\tK03131 TAF6; transcription initiation factor TFIID subunit 6"
					},
					{
						"name":"PHATRDRAFT_45779 hypothetical protein\tK03132 TAF7; transcription initiation factor TFIID subunit 7"
					},
					{
						"name":"PHATRDRAFT_47054 hypothetical protein\tK03126 TAF12; transcription initiation factor TFIID subunit 12"
					}
					]
				},
				{
					"name":"TFIIE"
				},
				{
					"name":"TFIIF",
					"children":[
					{
						"name":"PHATRDRAFT_46429 hypothetical protein\tK03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]"
					}
					]
				},
				{
					"name":"TFIIH",
					"children":[
					{
						"name":"PHATR_43960 hypothetical protein\tK03141 TFIIH1; transcription initiation factor TFIIH subunit 1"
					},
					{
						"name":"PHATRDRAFT_54326 TFIIH-p44; suppressor of stem-loop protein 1\tK03142 TFIIH2; transcription initiation factor TFIIH subunit 2"
					},
					{
						"name":"PHATR_44108 hypothetical protein\tK03143 TFIIH3; transcription initiation factor TFIIH subunit 3"
					},
					{
						"name":"PHATRDRAFT_20574 hypothetical protein\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]"
					},
					{
						"name":"PHATRDRAFT_54072 ERCC2; xeroderma pigmentosum group D complementing protein\tK10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]"
					},
					{
						"name":"PHATR_36847 hypothetical protein\tK10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit"
					},
					{
						"name":"PHATRDRAFT_10160 CDKD1; hypothetical protein\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]"
					},
					{
						"name":"PHATRDRAFT_47392 MAT1; hypothetical protein\tK10842 MNAT1; CDK-activating kinase assembly factor MAT1"
					},
					{
						"name":"PHATRDRAFT_48763 hypothetical protein\tK06634 CCNH; cyclin H"
					}
					]
				}
				]
			},
			{
				"name":"Mediator complex",
				"children":[
				{
					"name":"Head"
				},
				{
					"name":"Middle",
					"children":[
					{
						"name":"PHATRDRAFT_47149 hypothetical protein\tK15148 MED7; mediator of RNA polymerase II transcription subunit 7"
					},
					{
						"name":"PHATRDRAFT_38312 hypothetical protein\tK15153 MED31; mediator of RNA polymerase II transcription subunit 31"
					}
					]
				},
				{
					"name":"Tail"
				},
				{
					"name":"CDK-module"
				},
				{
					"name":"Other mediators"
				}
				]
			},
			{
				"name":"Coactivators",
				"children":[
				{
					"name":"SAGA\/TFTC\/STAGA complex",
					"children":[
					{
						"name":"PHATR_2957 hypothetical protein\tK06062 PCAF; histone acetyltransferase [EC:2.3.1.48]"
					},
					{
						"name":"PHATRDRAFT_42892 hypothetical protein\tK08874 TRRAP; transformation\/transcription domain-associated protein"
					},
					{
						"name":"PHATRDRAFT_1785 hypothetical protein\tK11314 TADA2A; transcriptional adapter 2-alpha"
					},
					{
						"name":"PHATRDRAFT_45009 hypothetical protein\tK03131 TAF6; transcription initiation factor TFIID subunit 6"
					},
					{
						"name":"PHATRDRAFT_45779 hypothetical protein\tK03132 TAF7; transcription initiation factor TFIID subunit 7"
					},
					{
						"name":"PHATRDRAFT_47054 hypothetical protein\tK03126 TAF12; transcription initiation factor TFIID subunit 12"
					},
					{
						"name":"PHATRDRAFT_47951 hypothetical protein\tK11364 SGF29; SAGA-associated factor 29"
					},
					{
						"name":"PHATR_33504 hypothetical protein\tK11368 ENY2; enhancer of yellow 2 transcription factor"
					},
					{
						"name":"PHATRDRAFT_44745 hypothetical protein\tK11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22\/27\/51 [EC:3.4.19.12]"
					},
					{
						"name":"PHATRDRAFT_17408 hypothetical protein\tK12830 SF3B3; splicing factor 3B subunit 3"
					}
					]
				},
				{
					"name":"BAF\/PBAF complex",
					"children":[
					{
						"name":"PHATRDRAFT_54092 chromatin remodeling-related protein\tK11649 SMARCC; SWI\/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C"
					},
					{
						"name":"PHATRDRAFT_29136 Act2; actin\/actin like protein\tK05692 ACTB_G1; actin beta\/gamma 1"
					},
					{
						"name":"PHATRDRAFT_29812 hypothetical protein\tK05692 ACTB_G1; actin beta\/gamma 1"
					},
					{
						"name":"PHATRDRAFT_51157 ACT1; actin\/actin like protein\tK05692 ACTB_G1; actin beta\/gamma 1"
					},
					{
						"name":"PHATRDRAFT_45153 hypothetical protein\tK11652 ACTL6B; actin-like protein 6B"
					}
					]
				},
				{
					"name":"SWI\/SNF complex",
					"children":[
					{
						"name":"PHATRDRAFT_54139 hBRM; hypothetical protein\tK11786 STH1_SNF2; ATP-dependent helicase STH1\/SNF2 [EC:5.6.2.-]"
					}
					]
				},
				{
					"name":"RSC complex",
					"children":[
					{
						"name":"PHATRDRAFT_54139 hBRM; hypothetical protein\tK11786 STH1_SNF2; ATP-dependent helicase STH1\/SNF2 [EC:5.6.2.-]"
					}
					]
				},
				{
					"name":"Others",
					"children":[
					{
						"name":"PHATRDRAFT_37144 hypothetical protein\tK25815 SUB1; activated RNA polymerase II transcriptional coactivator p15"
					}
					]
				}
				]
			},
			{
				"name":"Other transcription-related factors",
				"children":[
				{
					"name":"Transcription elongation factors",
					"children":[
					{
						"name":"PHATRDRAFT_36634 hypothetical protein\tK03145 TFIIS; transcription elongation factor S-II"
					},
					{
						"name":"PHATRDRAFT_27082 hypothetical protein\tK15171 SUPT4H1; transcription elongation factor SPT4"
					},
					{
						"name":"PHATRDRAFT_47388 hypothetical protein\tK15172 SUPT5H; transcription elongation factor SPT5"
					},
					{
						"name":"PHATRDRAFT_47879 hypothetical protein\tK11292 SUPT6H; transcription elongation factor SPT6"
					}
					]
				},
				{
					"name":"Transcription termination factor",
					"children":[
					{
						"name":"PHATRDRAFT_47180 hypothetical protein\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11"
					},
					{
						"name":"PHATRDRAFT_42753 hypothetical protein\tK14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1"
					},
					{
						"name":"PHATRDRAFT_28482 hypothetical protein\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]"
					},
					{
						"name":"PHATRDRAFT_45542 hypothetical protein\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4"
					},
					{
						"name":"PHATRDRAFT_50624 hypothetical protein\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4"
					},
					{
						"name":"PHATRDRAFT_11777 hypothetical protein\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]"
					},
					{
						"name":"PHATRDRAFT_18899 hypothetical protein\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]"
					},
					{
						"name":"PHATRDRAFT_50645 hypothetical protein\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]"
					},
					{
						"name":"PHATRDRAFT_43779 hypothetical protein\tK06100 SYMPK; symplekin"
					},
					{
						"name":"PHATRDRAFT_13834 hypothetical protein\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]"
					},
					{
						"name":"PHATRDRAFT_15233 hypothetical protein\tK12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]"
					},
					{
						"name":"PHATRDRAFT_27286 hypothetical protein\tK09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]"
					},
					{
						"name":"PHATRDRAFT_28730 hypothetical protein\tK09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]"
					}
					]
				},
				{
					"name":"PAF1 complex",
					"children":[
					{
						"name":"PHATRDRAFT_43639 hypothetical protein\tK15174 PAF1; RNA polymerase II-associated factor 1"
					},
					{
						"name":"PHATRDRAFT_46600 hypothetical protein\tK15175 CDC73; parafibromin"
					},
					{
						"name":"PHATRDRAFT_42758 hypothetical protein\tK15176 CTR9; RNA polymerase-associated protein CTR9"
					},
					{
						"name":"PHATRDRAFT_44561 hypothetical protein\tK15177 LEO1; RNA polymerase-associated protein LEO1"
					},
					{
						"name":"PHATRDRAFT_38931 hypothetical protein\tK15178 RTF1; RNA polymerase-associated protein RTF1"
					}
					]
				},
				{
					"name":"NELF complex"
				},
				{
					"name":"Super elongation complex (SEC)"
				},
				{
					"name":"Little elongation complex (LEC)"
				},
				{
					"name":"Brd4\/P-TEFb complex"
				},
				{
					"name":"BUR kinase complex"
				},
				{
					"name":"CTDK-I complex"
				},
				{
					"name":"7SK RNP complex"
				},
				{
					"name":"DBIRD complex"
				},
				{
					"name":"Others",
					"children":[
					{
						"name":"PHATRDRAFT_11009 hypothetical protein\tK15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]"
					},
					{
						"name":"PHATRDRAFT_42478 hypothetical protein\tK15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]"
					},
					{
						"name":"PHATRDRAFT_8658 hypothetical protein\tK15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]"
					},
					{
						"name":"PHATRDRAFT_45278 hypothetical protein\tK17498 SPN1; transcription factor SPN1"
					},
					{
						"name":"PHATRDRAFT_12963 hypothetical protein\tK24104 GPN; GPN-loop GTPase"
					},
					{
						"name":"PHATRDRAFT_13119 hypothetical protein\tK24104 GPN; GPN-loop GTPase"
					},
					{
						"name":"PHATRDRAFT_20034 hypothetical protein\tK24104 GPN; GPN-loop GTPase"
					},
					{
						"name":"PHATRDRAFT_31068 hypothetical protein\tK24104 GPN; GPN-loop GTPase"
					}
					]
				}
				]
			}
			]
		},
		{
			"name":"RNA polymerase III system",
			"children":[
			{
				"name":"RNA polymerase III",
				"children":[
				{
					"name":"Core subunits",
					"children":[
					{
						"name":"PHATRDRAFT_42100 RPC157; rna polymerase C 157 kDa\tK03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]"
					},
					{
						"name":"PHATRDRAFT_54289 RNAP-II_2; hypothetical protein\tK03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]"
					},
					{
						"name":"PHATR_52094 RNAP-II_1; hypothetical protein\tK03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1"
					},
					{
						"name":"PHATRDRAFT_12779 hypothetical protein\tK03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2"
					}
					]
				},
				{
					"name":"Pol III specific subunits",
					"children":[
					{
						"name":"PHATRDRAFT_47116 hypothetical protein\tK03023 RPC3; DNA-directed RNA polymerase III subunit RPC3"
					},
					{
						"name":"PHATR_54175 hypothetical protein\tK14721 RPC5; DNA-directed RNA polymerase III subunit RPC5"
					},
					{
						"name":"PHATRDRAFT_19835 hypothetical protein\tK03022 RPC8; DNA-directed RNA polymerase III subunit RPC8"
					},
					{
						"name":"PHATR_51630 RPC17; RNA polymerase C subunit 17 KDa\tK25304 RPC9; DNA-directed RNA polymerase III subunit RPC9"
					},
					{
						"name":"PHATR_13326 RPC11; RNA polymerase C subunit 11 kDa\tK03019 RPC11; DNA-directed RNA polymerase III subunit RPC11"
					}
					]
				},
				{
					"name":"Pol I, II, III common subunits",
					"children":[
					{
						"name":"PHATRDRAFT_25420 hypothetical protein\tK03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1"
					},
					{
						"name":"PHATRDRAFT_10148 hypothetical protein\tK03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2"
					},
					{
						"name":"PHATRDRAFT_22597 hypothetical protein\tK03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3"
					},
					{
						"name":"PHATRDRAFT_10821 hypothetical protein\tK03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5"
					}
					]
				}
				]
			},
			{
				"name":"Basal transcription factors",
				"children":[
				{
					"name":"TFIIIA"
				},
				{
					"name":"TFIIIB",
					"children":[
					{
						"name":"PHATR_10199 hypothetical protein\tK03120 TBP; transcription initiation factor TFIID TATA-box-binding protein"
					},
					{
						"name":"PHATRDRAFT_30925 hypothetical protein\tK15196 BRF1; transcription factor IIIB 90 kDa subunit"
					},
					{
						"name":"PHATRDRAFT_42928 hypothetical protein\tK15198 BDP1; transcription factor TFIIIB component B''"
					}
					]
				},
				{
					"name":"TFIIIC"
				},
				{
					"name":"TFIIIC, fungi type"
				}
				]
			},
			{
				"name":"Other transcription-related factors",
				"children":[
				{
					"name":"snRNA-activating protein complex (SNAPc)",
					"children":[
					{
						"name":"PHATRDRAFT_43092 hypothetical protein\tK15210 SNAPC3; snRNA-activating protein complex subunit 3"
					}
					]
				},
				{
					"name":"Octamer transcription factors"
				},
				{
					"name":"Others"
				}
				]
			}
			]
		},
		{
			"name":"RNA polymerase I system",
			"children":[
			{
				"name":"RNA polymerase I",
				"children":[
				{
					"name":"Core subunits",
					"children":[
					{
						"name":"PHATRDRAFT_bd955 hypothetical protein\tK02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]"
					},
					{
						"name":"PHATRDRAFT_9235 hypothetical protein\tK03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]"
					},
					{
						"name":"PHATR_52094 RNAP-II_1; hypothetical protein\tK03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1"
					},
					{
						"name":"PHATRDRAFT_12779 hypothetical protein\tK03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2"
					}
					]
				},
				{
					"name":"Pol I specific subunits",
					"children":[
					{
						"name":"PHATR_46740 hypothetical protein\tK03004 RPA43; DNA-directed RNA polymerase I subunit RPA43"
					},
					{
						"name":"PHATR_10310 hypothetical protein\tK03000 RPA12; DNA-directed RNA polymerase I subunit RPA12"
					}
					]
				},
				{
					"name":"Pol I, II, III common subunits",
					"children":[
					{
						"name":"PHATRDRAFT_25420 hypothetical protein\tK03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1"
					},
					{
						"name":"PHATRDRAFT_10148 hypothetical protein\tK03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2"
					},
					{
						"name":"PHATRDRAFT_22597 hypothetical protein\tK03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3"
					},
					{
						"name":"PHATRDRAFT_10821 hypothetical protein\tK03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5"
					}
					]
				}
				]
			},
			{
				"name":"Basal transcription factors",
				"children":[
				{
					"name":"SL1\/TIF-1B",
					"children":[
					{
						"name":"PHATR_10199 hypothetical protein\tK03120 TBP; transcription initiation factor TFIID TATA-box-binding protein"
					}
					]
				}
				]
			},
			{
				"name":"Other transcription-related factors",
				"children":[
				{
					"name":"UBF"
				},
				{
					"name":"Transcription initiation factors",
					"children":[
					{
						"name":"PHATRDRAFT_35171 hypothetical protein\tK15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3"
					},
					{
						"name":"PHATRDRAFT_50221 hypothetical protein\tK15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3"
					},
					{
						"name":"PHATRDRAFT_32255 hypothetical protein\tK15223 UAF30; upstream activation factor subunit UAF30"
					}
					]
				},
				{
					"name":"Transcription elongation factors",
					"children":[
					{
						"name":"PHATRDRAFT_27082 hypothetical protein\tK15171 SUPT4H1; transcription elongation factor SPT4"
					},
					{
						"name":"PHATRDRAFT_47388 hypothetical protein\tK15172 SUPT5H; transcription elongation factor SPT5"
					}
					]
				},
				{
					"name":"NoRC (nucleolar remodeling complex)",
					"children":[
					{
						"name":"PHATRDRAFT_28551 NURF-140; imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit\tK11654 SMARCA5; SWI\/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]"
					}
					]
				},
				{
					"name":"CTDK-I complex"
				},
				{
					"name":"Transcription termination factors"
				},
				{
					"name":"Others"
				}
				]
			}
			]
		}
		]
	},
	{
		"name":"Prokaryotic type",
		"children":[
		{
			"name":"Bacterial type",
			"children":[
			{
				"name":"RNA polymerase",
				"children":[
				{
					"name":"Core subunits"
				},
				{
					"name":"Sigma factors"
				}
				]
			},
			{
				"name":"Other transcription-related factors",
				"children":[
				{
					"name":"RNA polymerase-associated proteins"
				},
				{
					"name":"Transcription elongation factors"
				},
				{
					"name":"Transcription termination factor"
				}
				]
			}
			]
		},
		{
			"name":"Archaeal type",
			"children":[
			{
				"name":"RNA polymerase",
				"children":[
				{
					"name":"Core subunits"
				}
				]
			},
			{
				"name":"Basal transcription factors",
				"children":[
				{
					"name":"TFB"
				},
				{
					"name":"TFE"
				},
				{
					"name":"TFS"
				}
				]
			}
			]
		}
		]
	}
	]
}