{
	"name":"rhor03000",
	"children":[
	{
		"name":"Eukaryotic type",
		"children":[
		{
			"name":"Basic leucine zipper (bZIP)",
			"children":[
			{
				"name":"AP-1(-like) components, Jun"
			},
			{
				"name":"AP-1(-like) components, Fos"
			},
			{
				"name":"AP-1(-like) components, Maf"
			},
			{
				"name":"AP-1(-like) components, NF-E2"
			},
			{
				"name":"AP-1(-like) components, Fungal regulators"
			},
			{
				"name":"AP-1(-like) components, CRE-BP\/ATF"
			},
			{
				"name":"CREB"
			},
			{
				"name":"C\/EBP-like factors"
			},
			{
				"name":"bZIP\/PAR"
			},
			{
				"name":"Plant bZIP factors"
			},
			{
				"name":"ZIP only"
			}
			]
		},
		{
			"name":"Basic helix-loop-helix (bHLH)",
			"children":[
			{
				"name":"Ubiquitous (class A) factors"
			},
			{
				"name":"Myogenic transcription factors"
			},
			{
				"name":"Achaete-Scute"
			},
			{
				"name":"Tal\/Twist\/Atonal\/Hen, Lymphoid factors"
			},
			{
				"name":"Tal\/Twist\/Atonal\/Hen, Mesodermal Twist-like factors"
			},
			{
				"name":"Tal\/Twist\/Atonal\/Hen, HEN"
			},
			{
				"name":"Tal\/Twist\/Atonal\/Hen, Mesp"
			},
			{
				"name":"Tal\/Twist\/Atonal\/Hen, Atonal"
			},
			{
				"name":"Tal\/Twist\/Atonal\/Hen, Pancreatic factors"
			},
			{
				"name":"Hairy, Hairy\/E(SPL)"
			},
			{
				"name":"Hairy, Fungal regulators"
			},
			{
				"name":"Factors with PAS domain"
			},
			{
				"name":"Yabby"
			},
			{
				"name":"INO"
			},
			{
				"name":"HLH domain only"
			}
			]
		},
		{
			"name":"Basic helix-loop-helix\/leucine zipper (bHLH-ZIP)",
			"children":[
			{
				"name":"Ubiquitous bHLH-ZIP factors"
			},
			{
				"name":"Cell cycle controlling factors, Myc"
			},
			{
				"name":"Cell cycle controlling factors, Mad\/Max"
			},
			{
				"name":"Other bHLH-ZIP factors"
			}
			]
		},
		{
			"name":"Other basic domains",
			"children":[
			{
				"name":"NF-1"
			},
			{
				"name":"RF-X"
			},
			{
				"name":"AP-2 (bHSH)"
			}
			]
		},
		{
			"name":"Zinc finger",
			"children":[
			{
				"name":"Cys4 thyroid hormone receptor-like"
			},
			{
				"name":"Cys4 hepatocyte nuclear factor 4-like"
			},
			{
				"name":"Cys4 estrogen receptor-like"
			},
			{
				"name":"Cys4 nerve growth factor IB-like"
			},
			{
				"name":"Cys4 Fushi tarazu-F1-like"
			},
			{
				"name":"Cys4 germ cell nuclear factor"
			},
			{
				"name":"Cys4 Knirps\/DAX1-like"
			},
			{
				"name":"Cys4 GATA-factors"
			},
			{
				"name":"Cys2His2 SP\/KLF family and related proteins"
			},
			{
				"name":"Cys2His2 GLI-like"
			},
			{
				"name":"Cys2His2 Snail"
			},
			{
				"name":"Cys2His2 BTB-ZF factors"
			},
			{
				"name":"Cys2His2 BED"
			},
			{
				"name":"Cys2His2 PRDM"
			},
			{
				"name":"Cys2His2 metabolic regulators in fungi"
			},
			{
				"name":"Cys2His2 others"
			},
			{
				"name":"Cys2HisCys zinc factors"
			},
			{
				"name":"Cys3His zinc factors"
			},
			{
				"name":"Cys2CysHis zinc factors"
			},
			{
				"name":"CXXC CpG-binding proteins",
				"children":[
				{
					"name":"ONR75_25440 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]"
				}
				]
			},
			{
				"name":"Cys6 metabolic regulators in fungi"
			},
			{
				"name":"Other zinc fingers"
			}
			]
		},
		{
			"name":"Helix-turn-helix",
			"children":[
			{
				"name":"Homeo domain ANTP: HOXL"
			},
			{
				"name":"Homeo domain ANTP: NKL"
			},
			{
				"name":"Homeo domain Paired-related"
			},
			{
				"name":"Homeo domain LIM"
			},
			{
				"name":"Homeo domain POU"
			},
			{
				"name":"Homeo domain SINE"
			},
			{
				"name":"Homeo domain ZF"
			},
			{
				"name":"Homeo domain CUT"
			},
			{
				"name":"Homeo domain PROS"
			},
			{
				"name":"Homeo domain TALE"
			},
			{
				"name":"Homeo domain other"
			},
			{
				"name":"Fork head\/winged helix developmental regulators"
			},
			{
				"name":"Fork head\/winged helix tissue-specific regulators"
			},
			{
				"name":"Fork head\/winged helix cell cycle-controlling factors, E2F"
			},
			{
				"name":"Fork head\/winged helix cell cycle-controlling factors, DP"
			},
			{
				"name":"Fork head\/winged helix other regulators"
			},
			{
				"name":"Stork head\/winged helix factors"
			},
			{
				"name":"Heat shock factors"
			},
			{
				"name":"Tryptophan clusters Myb, Myb-factors"
			},
			{
				"name":"Tryptophan clusters Myb, Myb-like factors"
			},
			{
				"name":"Tryptophan clusters Ets-type"
			},
			{
				"name":"Tryptophan clusters interferon-regulating factors"
			},
			{
				"name":"TEA domain"
			},
			{
				"name":"ARID"
			}
			]
		},
		{
			"name":"beta-Scaffold factors with minor groove contacts",
			"children":[
			{
				"name":"RHR (Rel homology region) Rel\/Ankyrin"
			},
			{
				"name":"RHR (Rel homology region) Ankyrin only"
			},
			{
				"name":"RHR (Rel homology region) NF-AT"
			},
			{
				"name":"STAT"
			},
			{
				"name":"p53"
			},
			{
				"name":"MADS-box regulators of differentiation, MEF-2"
			},
			{
				"name":"MADS-box regulators of differentiation, Homeotic genes"
			},
			{
				"name":"MADS-box regulators of differentiation, Yeast regulators"
			},
			{
				"name":"MADS-box responders to external signals"
			},
			{
				"name":"SAND domain-containing proteins"
			},
			{
				"name":"TATA-binding proteins"
			},
			{
				"name":"HMG SOX"
			},
			{
				"name":"HMG TCF-1"
			},
			{
				"name":"HMG TOX"
			},
			{
				"name":"HMG2-related"
			},
			{
				"name":"UBF"
			},
			{
				"name":"Other HMG box factors"
			},
			{
				"name":"Heteromeric CCAAT factors"
			},
			{
				"name":"Grainyhead"
			},
			{
				"name":"Cold-shock domain factors, DbpA-like"
			},
			{
				"name":"Cold-shock domain factors, YB-1\/DbpB-like"
			},
			{
				"name":"Cold-shock domain factors, FRG Y2-like"
			},
			{
				"name":"Runt"
			},
			{
				"name":"MYRF"
			}
			]
		},
		{
			"name":"Other transcription factors",
			"children":[
			{
				"name":"HMGI(Y)"
			},
			{
				"name":"NUPR"
			},
			{
				"name":"Pocket domain Rb"
			},
			{
				"name":"Pocket domain CBP"
			},
			{
				"name":"T-box"
			},
			{
				"name":"DMRT"
			},
			{
				"name":"LRRFIP"
			},
			{
				"name":"TCP"
			},
			{
				"name":"AP2\/ERF"
			},
			{
				"name":"WRKY"
			},
			{
				"name":"LOB"
			},
			{
				"name":"GRAS"
			},
			{
				"name":"NAC"
			},
			{
				"name":"Copper-fist proteins fungal regulators"
			},
			{
				"name":"Others"
			}
			]
		}
		]
	},
	{
		"name":"Prokaryotic type",
		"children":[
		{
			"name":"Helix-turn-helix",
			"children":[
			{
				"name":"AraC family",
				"children":[
				{
					"name":"ONR75_10775 helix-turn-helix domain-containing protein\tK18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA"
				},
				{
					"name":"ONR75_03325 AraC family transcriptional regulator\tK07506 K07506; AraC family transcriptional regulator"
				},
				{
					"name":"ONR75_08530 AraC family transcriptional regulator\tK07506 K07506; AraC family transcriptional regulator"
				},
				{
					"name":"ONR75_10750 AraC family transcriptional regulator\tK07506 K07506; AraC family transcriptional regulator"
				},
				{
					"name":"ONR75_21260 AraC family transcriptional regulator\tK07506 K07506; AraC family transcriptional regulator"
				},
				{
					"name":"ONR75_01145 bifunctional helix-turn-helix domain-containing protein\/methylated-DNA--[protein]-cysteine S-methyltransferase\tK10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response \/ methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]"
				}
				]
			},
			{
				"name":"LysR family",
				"children":[
				{
					"name":"ONR75_28545 transcriptional regulator GcvA\tK03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator"
				},
				{
					"name":"ONR75_00325 LysR substrate-binding domain-containing protein\tK04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator"
				},
				{
					"name":"ONR75_03770 LysR substrate-binding domain-containing protein\tK11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator"
				},
				{
					"name":"ONR75_30380 LysR family transcriptional regulator\tK17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase"
				},
				{
					"name":"ONR75_32130 LysR substrate-binding domain-containing protein\tK19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein"
				},
				{
					"name":"ONR75_00940 LysR substrate-binding domain-containing protein\tK21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT"
				},
				{
					"name":"ONR75_03985 LysR substrate-binding domain-containing protein\tK21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT"
				},
				{
					"name":"ONR75_07625 LysR family transcriptional regulator\tK21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator"
				}
				]
			},
			{
				"name":"DeoR family",
				"children":[
				{
					"name":"ONR75_22060 DeoR\/GlpR family DNA-binding transcription regulator\tK02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor"
				},
				{
					"name":"ONR75_29685 DeoR\/GlpR family DNA-binding transcription regulator\tK02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor"
				}
				]
			},
			{
				"name":"LacI family",
				"children":[
				{
					"name":"ONR75_08385 LacI family transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor"
				},
				{
					"name":"ONR75_08640 LacI family transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor"
				},
				{
					"name":"ONR75_21440 LacI family DNA-binding transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor"
				}
				]
			},
			{
				"name":"GntR family",
				"children":[
				{
					"name":"ONR75_07205 phnF; (GenBank) phosphonate metabolism transcriptional regulator PhnF\tK02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein"
				},
				{
					"name":"ONR75_04755 hutC; (GenBank) histidine utilization repressor\tK05836 hutC; GntR family transcriptional regulator, histidine utilization repressor"
				},
				{
					"name":"ONR75_23950 GntR family transcriptional regulator\tK24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator"
				},
				{
					"name":"ONR75_24530 GntR family transcriptional regulator\tK03710 K03710; GntR family transcriptional regulator"
				},
				{
					"name":"ONR75_03395 PLP-dependent aminotransferase family protein\tK00375 K00375; GntR family transcriptional regulator \/ MocR family aminotransferase"
				},
				{
					"name":"ONR75_08685 GntR family transcriptional regulator\tK11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator"
				},
				{
					"name":"ONR75_28140 GntR family transcriptional regulator\tK11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator"
				}
				]
			},
			{
				"name":"TetR\/AcrR family",
				"children":[
				{
					"name":"ONR75_29860 TetR family transcriptional regulator C-terminal domain-containing protein\tK16137 nemR; TetR\/AcrR family transcriptional regulator, transcriptional repressor for nem operon"
				},
				{
					"name":"ONR75_31680 TetR\/AcrR family transcriptional regulator\tK16137 nemR; TetR\/AcrR family transcriptional regulator, transcriptional repressor for nem operon"
				}
				]
			},
			{
				"name":"Lrp\/AsnC family",
				"children":[
				{
					"name":"ONR75_07255 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein"
				},
				{
					"name":"ONR75_22760 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein"
				},
				{
					"name":"ONR75_05875 Lrp\/AsnC family transcriptional regulator\tK05800 decR; Lrp\/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator"
				},
				{
					"name":"ONR75_19675 Lrp\/AsnC family transcriptional regulator\tK05800 decR; Lrp\/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator"
				}
				]
			},
			{
				"name":"LuxR family"
			},
			{
				"name":"MarR family",
				"children":[
				{
					"name":"ONR75_06605 MarR family transcriptional regulator\tK06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin"
				},
				{
					"name":"ONR75_21590 MarR family winged helix-turn-helix transcriptional regulator\tK22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator"
				},
				{
					"name":"ONR75_00850 MarR family transcriptional regulator\tK23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator"
				}
				]
			},
			{
				"name":"MerR family"
			},
			{
				"name":"Fur family",
				"children":[
				{
					"name":"ONR75_00425 transcriptional repressor\tK03711 fur; Fur family transcriptional regulator, ferric uptake regulator"
				},
				{
					"name":"ONR75_31330 transcriptional repressor\tK09823 zur; Fur family transcriptional regulator, zinc uptake regulator"
				},
				{
					"name":"ONR75_00605 transcriptional repressor\tK09826 irr; Fur family transcriptional regulator, iron response regulator"
				},
				{
					"name":"ONR75_06325 transcriptional repressor\tK09826 irr; Fur family transcriptional regulator, iron response regulator"
				}
				]
			},
			{
				"name":"IclR family",
				"children":[
				{
					"name":"ONR75_09150 helix-turn-helix domain-containing protein\tK02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein"
				},
				{
					"name":"ONR75_08900 DNA-binding transcriptional regulator\tK05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator"
				},
				{
					"name":"ONR75_15965 DNA-binding transcriptional regulator\tK05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator"
				},
				{
					"name":"ONR75_17745 IclR family transcriptional regulator\tK19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor"
				}
				]
			},
			{
				"name":"CRP\/FNR family",
				"children":[
				{
					"name":"ONR75_04205 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein"
				},
				{
					"name":"ONR75_07545 helix-turn-helix domain-containing protein\tK01420 fnr; CRP\/FNR family transcriptional regulator, anaerobic regulatory protein"
				},
				{
					"name":"ONR75_21955 Crp\/Fnr family transcriptional regulator\tK01420 fnr; CRP\/FNR family transcriptional regulator, anaerobic regulatory protein"
				},
				{
					"name":"ONR75_31425 helix-turn-helix domain-containing protein\tK15861 fixK; CRP\/FNR family transcriptional regulator, nitrogen fixation regulation protein"
				},
				{
					"name":"ONR75_07385 Crp\/Fnr family transcriptional regulator\tK21564 nnrR; CRP\/FNR family transcriptional regulator, nitrogen oxide reductase regulator"
				}
				]
			},
			{
				"name":"Rrf2 family",
				"children":[
				{
					"name":"ONR75_05340 Rrf2 family transcriptional regulator\tK13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor"
				}
				]
			},
			{
				"name":"ArsR family",
				"children":[
				{
					"name":"ONR75_15415 metalloregulator ArsR\/SmtB family transcription factor\tK03892 arsR; ArsR family transcriptional regulator, arsenate\/arsenite\/antimonite-responsive transcriptional repressor"
				},
				{
					"name":"ONR75_08930 metalloregulator ArsR\/SmtB family transcription factor\tK22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator"
				},
				{
					"name":"ONR75_18000 metalloregulator ArsR\/SmtB family transcription factor\tK22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator"
				},
				{
					"name":"ONR75_18035 metalloregulator ArsR\/SmtB family transcription factor\tK22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator"
				},
				{
					"name":"ONR75_30350 metalloregulator ArsR\/SmtB family transcription factor\tK22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator"
				}
				]
			},
			{
				"name":"XRE family",
				"children":[
				{
					"name":"ONR75_03735 helix-turn-helix transcriptional regulator\tK15546 boxR; XRE family transcriptional regulator, aerobic\/anaerobic benzoate catabolism transcriptional regulator"
				},
				{
					"name":"ONR75_29605 short-chain fatty acyl-CoA regulator family protein\tK07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator"
				}
				]
			},
			{
				"name":"PadR family"
			},
			{
				"name":"Other families",
				"children":[
				{
					"name":"ONR75_20710 helix-turn-helix domain-containing protein\tK18831 higA; HTH-type transcriptional regulator \/ antitoxin HigA"
				},
				{
					"name":"ONR75_04630 sigma-54-dependent Fis family transcriptional regulator\tK21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR"
				},
				{
					"name":"ONR75_30100 TOBE domain-containing protein\tK02019 modE; molybdate transport system regulatory protein"
				},
				{
					"name":"ONR75_14905 helix-turn-helix domain-containing protein\tK07726 K07726; putative transcriptional regulator"
				},
				{
					"name":"ONR75_05515 helix-turn-helix transcriptional regulator\tK07727 K07727; putative transcriptional regulator"
				}
				]
			}
			]
		},
		{
			"name":"Ribbon-helix-helix",
			"children":[
			{
				"name":"CopG family"
			},
			{
				"name":"Other families",
				"children":[
				{
					"name":"ONR75_28310 putA; (GenBank) bifunctional proline dehydrogenase\/L-glutamate gamma-semialdehyde dehydrogenase PutA\tK13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor \/ proline dehydrogenase \/ delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]"
				}
				]
			}
			]
		},
		{
			"name":"Other transcription factors",
			"children":[
			{
				"name":"BglG family"
			},
			{
				"name":"Others",
				"children":[
				{
					"name":"ONR75_07400 NosR\/NirI family protein\tK19339 nosR; NosR\/NirI family transcriptional regulator, nitrous oxide reductase regulator"
				},
				{
					"name":"ONR75_04135 metal-sensitive transcriptional regulator\tK21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor"
				},
				{
					"name":"ONR75_31155 BolA family transcriptional regulator\tK05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator"
				},
				{
					"name":"ONR75_01440 ParB\/RepB\/Spo0J family partition protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein"
				},
				{
					"name":"ONR75_03445 ParB N-terminal domain-containing protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein"
				},
				{
					"name":"ONR75_31385 CarD family transcriptional regulator\tK07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription"
				},
				{
					"name":"ONR75_01205 hrcA; (GenBank) heat-inducible transcriptional repressor HrcA\tK03705 hrcA; heat-inducible transcriptional repressor"
				},
				{
					"name":"ONR75_20590 TenA family protein\tK03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]"
				},
				{
					"name":"ONR75_06410 rnk; (GenBank) nucleoside diphosphate kinase regulator\tK06140 rnk; regulator of nucleoside diphosphate kinase"
				},
				{
					"name":"ONR75_16980 FMN-binding negative transcriptional regulator\tK07734 paiB; transcriptional regulator"
				},
				{
					"name":"ONR75_27110 YqgE\/AlgH family protein\tK07735 algH; putative transcriptional regulator"
				},
				{
					"name":"ONR75_12310 dksA; (GenBank) RNA polymerase-binding protein DksA\tK06204 dksA; RNA polymerase-binding transcription factor"
				},
				{
					"name":"ONR75_15535 nrdR; (GenBank) transcriptional regulator NrdR\tK07738 nrdR; transcriptional repressor NrdR"
				},
				{
					"name":"ONR75_19325 sel1 repeat family protein\tK25885 exoR; exopolysaccharide production negative regulator"
				}
				]
			}
			]
		}
		]
	}
	]
}