{ "name":"thj03019", "children":[ { "name":"Eukaryotic type", "children":[ { "name":"mRNA processing factors", "children":[ { "name":"5' end processing", "children":[ { "name":"Capping factors", "children":[ { "name":"104806007 mRNA cap guanine-N7 methyltransferase 2\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"104817889 mRNA cap guanine-N7 methyltransferase 1\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"104816222 mRNA-capping enzyme isoform X1\tK13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]" }, { "name":"104823280 mRNA-capping enzyme-like isoform X1\tK13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]" }, { "name":"104827039 mRNA-capping enzyme-like isoform X1\tK13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]" }, { "name":"104813910 cyclin-dependent kinase D-3-like\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]" }, { "name":"104822578 cyclin-dependent kinase D-2\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]" } ] }, { "name":"Cap binding complex", "children":[ { "name":"104800443 nuclear cap-binding protein subunit 1\tK12882 NCBP1; nuclear cap-binding protein subunit 1" }, { "name":"104801162 nuclear cap-binding protein subunit 2 isoform X1\tK12883 NCBP2; nuclear cap-binding protein subunit 2" } ] } ] }, { "name":"3' end processing", "children":[ { "name":"Pre-mRNA cleavage factor Im (CFIm)", "children":[ { "name":"104800254 pre-mRNA cleavage factor Im 25 kDa subunit 2\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"104811985 pre-mRNA cleavage factor Im 25 kDa subunit 2-like\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"104820017 pre-mRNA cleavage factor Im 25 kDa subunit 1\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"104825098 pre-mRNA cleavage factor Im 25 kDa subunit 2-like\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"104827596 pre-mRNA cleavage factor Im 25 kDa subunit 2-like\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"104813448 cleavage and polyadenylation specificity factor subunit 6-like\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" }, { "name":"104818108 spidroin-1-like\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" }, { "name":"104824017 cleavage and polyadenylation specificity factor subunit CG7185-like\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" }, { "name":"104825680 RNA-binding motif protein, X-linked-like-2\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" } ] }, { "name":"Pre-mRNA cleavage factor IIm (CFIIm)", "children":[ { "name":"104811064 protein CLP1 homolog isoform X1\tK14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]" }, { "name":"104805097 polyadenylation and cleavage factor homolog 4-like\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" }, { "name":"104812944 polyadenylation and cleavage factor homolog 4 isoform X1\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" }, { "name":"104822429 polyadenylation and cleavage factor homolog 1-like\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" }, { "name":"104824534 polyadenylation and cleavage factor homolog 4\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" } ] }, { "name":"Cleavage and polyadenylation specificity factor (CPSF) complex", "children":[ { "name":"104825074 cleavage and polyadenylation specificity factor subunit 1\tK14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1" }, { "name":"104821393 cleavage and polyadenylation specificity factor subunit 2 isoform X1\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"104819173 cleavage and polyadenylation specificity factor subunit 3-I\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"104798605 30-kDa cleavage and polyadenylation specificity factor 30\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"104811338 putative uncharacterized protein DDB_G0274405\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"104824416 uncharacterized protein LOC104824416\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"104819128 flowering time control protein FY-like\tK15542 PFS2; polyadenylation factor subunit 2" }, { "name":"104826724 flowering time control protein FY-like\tK15542 PFS2; polyadenylation factor subunit 2" }, { "name":"104821325 WD repeat-containing protein 82-B isoform X1\tK14962 WDR82; COMPASS component SWD2" }, { "name":"104822400 WD repeat-containing protein 82\tK14962 WDR82; COMPASS component SWD2" }, { "name":"104802792 serine\/threonine-protein phosphatase PP1 isozyme 9\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104809362 LOW QUALITY PROTEIN: serine\/threonine-protein phosphatase PP1 isozyme 3\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104810065 serine\/threonine-protein phosphatase PP1 isozyme 4\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104810749 serine\/threonine-protein phosphatase PP1 isozyme 2\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104813029 serine\/threonine-protein phosphatase PP1 isozyme 6\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104814760 serine\/threonine-protein phosphatase PP1 isozyme 6-like isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104814889 serine\/threonine-protein phosphatase PP1 isozyme 2-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104815772 serine\/threonine-protein phosphatase PP1 isozyme 1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104815993 serine\/threonine-protein phosphatase PP1 isozyme 7-like isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104818727 serine\/threonine-protein phosphatase PP1 isozyme 9 isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104821300 serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104823766 serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104826079 serine\/threonine-protein phosphatase PP1 isozyme 7\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"104812146 RNA polymerase II subunit A C-terminal domain phosphatase SSU72\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" } ] }, { "name":"Cleavage stimulation factor (CSTF) complex", "children":[ { "name":"104818519 LOW QUALITY PROTEIN: cleavage stimulation factor subunit 50\tK14406 CSTF1; cleavage stimulation factor subunit 1" }, { "name":"104800099 cleavage stimulating factor 64\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"104800222 cleavage stimulating factor 64-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"104812205 cleavage stimulation factor subunit 77\tK14408 CSTF3; cleavage stimulation factor subunit 3" }, { "name":"104799842 uncharacterized protein LOC104799842 isoform X1\tK06100 SYMPK; symplekin" }, { "name":"104816196 uncharacterized protein LOC104816196 isoform X1\tK06100 SYMPK; symplekin" }, { "name":"104825811 uncharacterized protein LOC104825811\tK06100 SYMPK; symplekin" } ] }, { "name":"U7-dependent histone pre-mRNA processing factors", "children":[ { "name":"104806243 small nuclear ribonucleoprotein-associated protein B\tK11086 SNRPB; small nuclear ribonucleoprotein B and B'" }, { "name":"104812077 small nuclear ribonucleoprotein-associated protein B'-like\tK11086 SNRPB; small nuclear ribonucleoprotein B and B'" }, { "name":"104809773 small nuclear ribonucleoprotein SmD3b\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"104811465 small nuclear ribonucleoprotein SmD3b-like\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"104803508 small nuclear ribonucleoprotein E\tK11097 SNRPE; small nuclear ribonucleoprotein E" }, { "name":"104803931 small nuclear ribonucleoprotein E-like\tK11097 SNRPE; small nuclear ribonucleoprotein E" }, { "name":"104803496 probable small nuclear ribonucleoprotein F\tK11098 SNRPF; small nuclear ribonucleoprotein F" }, { "name":"104803938 probable small nuclear ribonucleoprotein F isoform X1\tK11098 SNRPF; small nuclear ribonucleoprotein F" }, { "name":"104823127 probable small nuclear ribonucleoprotein G\tK11099 SNRPG; small nuclear ribonucleoprotein G" }, { "name":"104826821 probable small nuclear ribonucleoprotein G\tK11099 SNRPG; small nuclear ribonucleoprotein G" }, { "name":"104821393 cleavage and polyadenylation specificity factor subunit 2 isoform X1\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"104819173 cleavage and polyadenylation specificity factor subunit 3-I\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"104800099 cleavage stimulating factor 64\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"104800222 cleavage stimulating factor 64-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"104799842 uncharacterized protein LOC104799842 isoform X1\tK06100 SYMPK; symplekin" }, { "name":"104816196 uncharacterized protein LOC104816196 isoform X1\tK06100 SYMPK; symplekin" }, { "name":"104825811 uncharacterized protein LOC104825811\tK06100 SYMPK; symplekin" } ] }, { "name":"DRB sensitivity inducing factor (DSIF) complex", "children":[ { "name":"104800345 transcription elongation factor SPT4 homolog 2-like\tK15171 SUPT4H1; transcription elongation factor SPT4" }, { "name":"104819361 transcription elongation factor SPT4 homolog 1\tK15171 SUPT4H1; transcription elongation factor SPT4" }, { "name":"104798874 putative transcription elongation factor SPT5 homolog 1\tK15172 SUPT5H; transcription elongation factor SPT5" }, { "name":"104806843 putative transcription elongation factor SPT5 homolog 1 isoform X1\tK15172 SUPT5H; transcription elongation factor SPT5" } ] }, { "name":"N6-methyltransferase complex", "children":[ { "name":"104806452 N6-adenosine-methyltransferase MT-A70-like\tK05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]" }, { "name":"104811969 methyltransferase-like protein 1\tK23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit" }, { "name":"104807791 methyltransferase-like protein 16\tK11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]" }, { "name":"104809841 FKBP12-interacting protein of 37 kDa isoform X1\tK22824 WTAP; pre-mRNA-splicing regulator WTAP" }, { "name":"104811924 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13\tK22909 ZC3H13; zinc finger CCCH domain-containing protein 13" }, { "name":"104827038 E3 ubiquitin-protein ligase Hakai\tK15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]" } ] }, { "name":"Poly(A) addition factors", "children":[ { "name":"104803745 nuclear poly(A) polymerase 4 isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"104803802 nuclear poly(A) polymerase 4-like isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"104811261 nuclear poly(A) polymerase 4-like\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"104812155 nuclear poly(A) polymerase 1 isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"104818875 nuclear poly(A) polymerase 3\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" } ] }, { "name":"Negative regulators of mRNA 3' end processing", "children":[ { "name":"104801137 BRCA1-associated RING domain protein 1 isoform X1\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"104812328 protein BREAST CANCER SUSCEPTIBILITY 1 homolog\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"104805377 zinc finger CCCH domain-containing protein 41\tK13192 RBM26; RNA-binding protein 26" }, { "name":"104823948 zinc finger CCCH domain-containing protein 41-like\tK13192 RBM26; RNA-binding protein 26" }, { "name":"104802219 uncharacterized protein LOC104802219\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"104815949 uncharacterized protein LOC104815949\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"104817542 uncharacterized protein LOC104817542\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"104819751 uncharacterized protein LOC104819751\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" } ] } ] }, { "name":"Other processing factors", "children":[ { "name":"104815670 DNA\/RNA-binding protein KIN17\tK13102 KIN; DNA\/RNA-binding protein KIN17" }, { "name":"104812520 methyltransferase-like protein 22 isoform X1\tK23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]" }, { "name":"104801503 serrate RNA effector molecule\tK27103 SRRT; serrate RNA effector molecule" }, { "name":"104816965 serrate RNA effector molecule-like isoform X1\tK27103 SRRT; serrate RNA effector molecule" }, { "name":"104826477 serrate RNA effector molecule-like\tK27103 SRRT; serrate RNA effector molecule" } ] } ] }, { "name":"mRNA surveillance and transport factors", "children":[ { "name":"Transport factors", "children":[ { "name":"EJC complex", "children":[ { "name":"104811180 RNA-binding protein 8A-B-like\tK12876 RBM8A; RNA-binding protein 8A" }, { "name":"104816872 RNA-binding protein 8A-B isoform X1\tK12876 RBM8A; RNA-binding protein 8A" }, { "name":"104817916 RNA-binding protein 8A-B-like\tK12876 RBM8A; RNA-binding protein 8A" }, { "name":"104801496 protein mago nashi homolog\tK12877 MAGOH; protein mago nashi" }, { "name":"104814107 LOW QUALITY PROTEIN: protein mago nashi homolog\tK12877 MAGOH; protein mago nashi" }, { "name":"104816996 protein mago nashi homolog\tK12877 MAGOH; protein mago nashi" }, { "name":"104816286 THO complex subunit 4B\tK12881 THOC4; THO complex subunit 4" }, { "name":"104822306 THO complex subunit 4D isoform X1\tK12881 THOC4; THO complex subunit 4" }, { "name":"104823255 LOW QUALITY PROTEIN: THO complex subunit 4B-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"104823841 THO complex subunit 4D-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"104827008 THO complex subunit 4B-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"104798662 DEAD-box ATP-dependent RNA helicase 56-like\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"104799232 DEAD-box ATP-dependent RNA helicase 56\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"104825180 DEAD-box ATP-dependent RNA helicase 56-like\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"104815234 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 2-like\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"104826525 DEAD-box ATP-dependent RNA helicase 2\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"104802003 histone deacetylase complex subunit SAP18\tK14324 SAP18; histone deacetylase complex subunit SAP18" }, { "name":"104805935 pinin\tK13114 PNN; pinin" }, { "name":"104807709 apoptotic chromatin condensation inducer in the nucleus isoform X1\tK12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus" }, { "name":"104824862 apoptotic chromatin condensation inducer in the nucleus-like\tK12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus" }, { "name":"104813616 serine\/arginine-rich splicing factor SR45-like isoform X1\tK14325 RNPS1; RNA-binding protein with serine-rich domain 1" }, { "name":"104800686 serine\/arginine repetitive matrix protein 1 isoform X1\tK13171 SRRM1; serine\/arginine repetitive matrix protein 1" } ] }, { "name":"TREX complex", "children":[ { "name":"104826748 THO complex subunit 1 isoform X1\tK12878 THOC1; THO complex subunit 1" }, { "name":"104807876 THO complex subunit 2-like\tK12879 THOC2; THO complex subunit 2" }, { "name":"104825570 THO complex subunit 2\tK12879 THOC2; THO complex subunit 2" }, { "name":"104811694 THO complex subunit 3\tK12880 THOC3; THO complex subunit 3" }, { "name":"104813462 THO complex subunit 3-like\tK12880 THOC3; THO complex subunit 3" }, { "name":"104816286 THO complex subunit 4B\tK12881 THOC4; THO complex subunit 4" }, { "name":"104822306 THO complex subunit 4D isoform X1\tK12881 THOC4; THO complex subunit 4" }, { "name":"104823255 LOW QUALITY PROTEIN: THO complex subunit 4B-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"104823841 THO complex subunit 4D-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"104827008 THO complex subunit 4B-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"104812571 THO complex subunit 5B\tK13174 THOC5; THO complex subunit 5" }, { "name":"104822853 THO complex subunit 5B isoform X1\tK13174 THOC5; THO complex subunit 5" }, { "name":"104814631 THO complex subunit 6\tK13175 THOC6; THO complex subunit 6" }, { "name":"104820896 THO complex subunit 7A\tK13176 THOC7; THO complex subunit 7" } ] }, { "name":"TREX-2 complex", "children":[ { "name":"104820025 enhanced ethylene response protein 5\tK23801 PCID2; nuclear mRNA export protein PCID2\/THP1" }, { "name":"104805767 protein DELETION OF SUV3 SUPPRESSOR 1(I)\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"104823782 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"109116495 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"104823981 transcription and mRNA export factor SUS1\tK11368 ENY2; enhancer of yellow 2 transcription factor" }, { "name":"104818830 SAC3 family protein B isoform X1\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"104824197 SAC3 family protein C isoform X1\tK23719 SAC3; nuclear mRNA export protein SAC3" } ] }, { "name":"Nuclear pore complex", "children":[ { "name":"104813306 nuclear-pore anchor\tK09291 TPR; nucleoprotein TPR" }, { "name":"104812445 protein RAE1\tK14298 RAE1; mRNA export factor" }, { "name":"104813581 protein RAE1\tK14298 RAE1; mRNA export factor" }, { "name":"104802411 protein transport protein SEC13 homolog B-like\tK14004 SEC13; protein transport protein SEC13" }, { "name":"104821058 protein transport protein SEC13 homolog B\tK14004 SEC13; protein transport protein SEC13" }, { "name":"104822379 protein transport protein SEC13 homolog B-like\tK14004 SEC13; protein transport protein SEC13" }, { "name":"104803757 nuclear pore complex protein NUP85 isoform X1\tK14304 NUP85; nuclear pore complex protein Nup85" }, { "name":"104803556 nuclear pore complex protein NUP43\tK14305 NUP43; nuclear pore complex protein Nup43" }, { "name":"104806368 uncharacterized protein LOC104806368 isoform X1\tK14295 NUP50; nuclear pore complex protein Nup50" }, { "name":"104814292 uncharacterized protein LOC104814292 isoform X1\tK14295 NUP50; nuclear pore complex protein Nup50" }, { "name":"104825515 nuclear pore complex protein NUP54\tK14308 NUP54; nuclear pore complex protein Nup54" }, { "name":"104802481 nuclear pore complex protein NUP62\tK14306 NUP62; nuclear pore complex protein Nup62" }, { "name":"104826852 nuclear pore complex protein NUP88 isoform X1\tK14318 NUP88; nuclear pore complex protein Nup88" }, { "name":"104817509 nuclear pore complex protein NUP93A\tK14309 NUP93; nuclear pore complex protein Nup93" }, { "name":"104806451 nuclear pore complex protein NUP98A isoform X1\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"104812443 nuclear pore complex protein NUP96\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"104822664 nuclear pore complex protein NUP107\tK14301 NUP107; nuclear pore complex protein Nup107" }, { "name":"104815358 nuclear pore complex protein NUP133 isoform X1\tK14300 NUP133; nuclear pore complex protein Nup133" }, { "name":"104824773 uncharacterized protein LOC104824773 isoform X1\tK14311 NUP188; nuclear pore complex protein Nup188" }, { "name":"104823681 nuclear pore complex protein NUP155\tK14312 NUP155; nuclear pore complex protein Nup155" }, { "name":"104806485 nuclear pore complex protein NUP160\tK14303 NUP160; nuclear pore complex protein Nup160" }, { "name":"104817965 nuclear pore complex protein NUP35\tK14313 NUP35; nuclear pore complex protein Nup53" }, { "name":"104808989 nuclear pore complex protein NUP205\tK14310 NUP205; nuclear pore complex protein Nup205" }, { "name":"104805370 nuclear pore complex protein GP210\tK14314 NUP210; nuclear pore complex protein Nup210" }, { "name":"104822690 nuclear pore complex protein NUP214 isoform X1\tK14317 NUP214; nuclear pore complex protein Nup214" }, { "name":"104819823 nuclear pore complex protein NUP58 isoform X1\tK14307 NUPL1; nucleoporin p58\/p45" }, { "name":"104809224 zinc finger CCCH domain-containing protein 16\tK14321 NUPL2; nucleoporin-like protein 2" }, { "name":"104810627 uncharacterized protein LOC104810627\tK14315 NDC1; nucleoporin NDC1" }, { "name":"104823610 protein SEH1\tK14299 SEH1; nucleoporin SEH1" }, { "name":"104814894 LOW QUALITY PROTEIN: aladin\tK14320 AAAS; aladin" }, { "name":"104805269 protein GLE1 isoform X1\tK18723 GLE1; nucleoporin GLE1" } ] }, { "name":"Ran-mediated transport factors", "children":[ { "name":"104799654 GTP-binding nuclear protein Ran-3\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"104811044 GTP-binding nuclear protein Ran-3-like\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"104815105 GTP-binding nuclear protein Ran-3\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"104809248 plant UBX domain-containing protein 10-like\tK18726 FAF2; FAS-associated factor 2" }, { "name":"104815202 plant UBX domain-containing protein 10-like\tK18726 FAF2; FAS-associated factor 2" }, { "name":"104816345 cell division control protein 48 homolog E-like\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"104823234 cell division control protein 48 homolog E\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"104823479 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"104826910 cell division control protein 48 homolog E\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"104801156 protein N-lysine methyltransferase METTL21A\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"104808317 protein-lysine methyltransferase METTL21D\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"104802918 protein EXPORTIN 1A-like\tK14290 XPO1; exportin-1" }, { "name":"104820879 protein EXPORTIN 1A\tK14290 XPO1; exportin-1" }, { "name":"104816588 exportin-7 isoform X1\tK18460 XPO7; exportin-7" }, { "name":"104826824 exportin-7-like isoform X1\tK18460 XPO7; exportin-7" }, { "name":"104818782 RAN GTPase-activating protein 2\tK14319 RANGAP1; Ran GTPase-activating protein 1" }, { "name":"104823049 RAN GTPase-activating protein 1-like\tK14319 RANGAP1; Ran GTPase-activating protein 1" }, { "name":"104807512 nuclear transport factor 2\tK28773 NUTF2; nuclear transport factor 2" }, { "name":"104809514 nuclear transport factor 2\tK28773 NUTF2; nuclear transport factor 2" }, { "name":"104814197 nuclear transport factor 2\tK28773 NUTF2; nuclear transport factor 2" }, { "name":"104825494 nuclear transport factor 2-like\tK28773 NUTF2; nuclear transport factor 2" } ] }, { "name":"eIF4F and regulatory proteins", "children":[ { "name":"104802872 eukaryotic translation initiation factor NCBP\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104806109 eukaryotic translation initiation factor 4E-1-like isoform X2\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104808876 eukaryotic translation initiation factor\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104814271 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104826604 eukaryotic translation initiation factor-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104827739 eukaryotic translation initiation factor 4E-1\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104809144 eukaryotic initiation factor 4A-1-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104810359 eukaryotic initiation factor 4A-1\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104811233 eukaryotic initiation factor 4A-9-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104815634 eukaryotic initiation factor 4A-1\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104822642 eukaryotic initiation factor 4A-1-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104822646 eukaryotic initiation factor 4A-1\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104802505 eukaryotic translation initiation factor 4G-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104803546 eukaryotic translation initiation factor isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104813539 eukaryotic translation initiation factor-like isoform X2\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104817181 eukaryotic translation initiation factor 4G isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104817820 eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104804098 eukaryotic translation initiation factor 4B3\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"104824007 eukaryotic translation initiation factor 4B2-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"104825667 eukaryotic translation initiation factor 4B2-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"104820753 protein PIR\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"104802743 DEAD-box ATP-dependent RNA helicase 37-like isoform X1\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"104820910 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"104824491 DEAD-box ATP-dependent RNA helicase 37-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"104807415 uncharacterized protein LOC104807415 isoform X1\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"104798793 polyadenylate-binding protein 8-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104800094 polyadenylate-binding protein 3 isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104804379 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104804545 polyadenylate-binding protein 4-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104807261 LOW QUALITY PROTEIN: polyadenylate-binding protein 2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104807595 polyadenylate-binding protein 4\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104810539 polyadenylate-binding protein 6-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104814171 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104817957 polyadenylate-binding protein 6\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104820493 polyadenylate-binding protein 8-like isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104825367 polyadenylate-binding protein 8 isoform X2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104827503 polyadenylate-binding protein 7 isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104814901 DExH-box ATP-dependent RNA helicase DExH11 isoform X1\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"104805894 malignant T-cell-amplified sequence 1 homolog\tK07575 MCTS; malignant T-cell-amplified sequence" }, { "name":"104820740 malignant T-cell-amplified sequence 1 homolog isoform X1\tK07575 MCTS; malignant T-cell-amplified sequence" }, { "name":"104799697 translation machinery-associated protein 22-like\tK24272 DENR; density-regulated protein" }, { "name":"104824639 translation machinery-associated protein 22-like\tK24272 DENR; density-regulated protein" } ] }, { "name":"APOBEC1-ACF complex" }, { "name":"Other transport factors", "children":[ { "name":"104809537 partner of Y14 and mago\tK14294 WIBG; partner of Y14 and mago" }, { "name":"104801196 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104803246 UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104804848 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104805369 heterogeneous nuclear ribonucleoprotein A1 isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104809925 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104810446 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104812212 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104813889 glycine-rich RNA-binding protein 5, mitochondrial\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104815479 UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104818345 glycine-rich RNA-binding protein 3, mitochondrial-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104819032 heterogeneous nuclear ribonucleoproteins A2\/B1-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104819402 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104822722 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104824389 UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104825320 heterogeneous nuclear ribonucleoprotein A3 homolog 2-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104801074 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104802622 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104806733 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104807586 RNA-binding protein Musashi homolog 2\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104808655 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104808854 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104811651 heterogeneous nuclear ribonucleoprotein 1 isoform X1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104812800 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104813442 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104816766 RNA-binding protein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104817697 heterogeneous nuclear ribonucleoprotein 1-like isoform X1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104826617 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104826659 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"104803321 HBS1-like protein isoform X1\tK14416 HBS1; elongation factor 1 alpha-like protein" }, { "name":"104814967 HBS1-like protein isoform X1\tK14416 HBS1; elongation factor 1 alpha-like protein" }, { "name":"104821795 protein PELOTA 1\tK06965 PELO; protein pelota" }, { "name":"104798864 polyadenylate-binding protein 2 isoform X1\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"104801673 polyadenylate-binding protein 3\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"104811544 polyadenylate-binding protein 1\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"104814766 polyadenylate-binding protein 2-like isoform X1\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"104825048 polyadenylate-binding protein 1-like\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"104805142 DEAD-box ATP-dependent RNA helicase 38\tK18655 DDX19; ATP-dependent RNA helicase DDX19\/DBP5 [EC:5.6.2.7]" }, { "name":"104799261 pre-mRNA-splicing factor SYF1\tK12867 SYF1; pre-mRNA-splicing factor SYF1" }, { "name":"104805331 protein MODIFIER OF SNC1 11-like\tK18732 SARNP; SAP domain-containing ribonucleoprotein" }, { "name":"104816304 protein MODIFIER OF SNC1 11\tK18732 SARNP; SAP domain-containing ribonucleoprotein" }, { "name":"104823246 protein MODIFIER OF SNC1 11-like isoform X1\tK18732 SARNP; SAP domain-containing ribonucleoprotein" }, { "name":"104810308 transcription factor Pur-alpha 1 isoform X1\tK21772 PURA; transcriptional activator protein Pur-alpha" }, { "name":"104809997 SAC3 family protein A\tK23802 LENG8; SAC3 family protein LENG8\/THP3" }, { "name":"104824248 SAC3 family protein A-like isoform X1\tK23802 LENG8; SAC3 family protein LENG8\/THP3" } ] } ] }, { "name":"Surveillance factors", "children":[ { "name":"Surveillance complex", "children":[ { "name":"104799994 eukaryotic peptide chain release factor subunit 1-1-like\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"104805291 eukaryotic peptide chain release factor subunit 1-3\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"104807188 eukaryotic peptide chain release factor subunit 1-1\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"104807998 eukaryotic peptide chain release factor subunit 1-1-like\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"104812160 eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like\tK03267 ERF3; peptide chain release factor subunit 3" }, { "name":"104813913 eukaryotic peptide chain release factor GTP-binding subunit ERF3A\tK03267 ERF3; peptide chain release factor subunit 3" }, { "name":"104798343 regulator of nonsense transcripts 1 homolog isoform X1\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"104806689 regulator of nonsense transcripts 1 homolog isoform X1\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"104809987 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"104806760 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"104815973 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" } ] }, { "name":"Protein phosphatase 2A", "children":[ { "name":"104802239 serine\/threonine-protein phosphatase PP2A-3 catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"104802782 serine\/threonine-protein phosphatase PP2A-3 catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"104808798 serine\/threonine-protein phosphatase PP2A-2 catalytic subunit-like isoform X1\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"104819719 serine\/threonine-protein phosphatase PP2A-2 catalytic subunit isoform X1\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"104821037 serine\/threonine-protein phosphatase PP2A-3 catalytic subunit isoform X1\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"104822079 serine\/threonine-protein phosphatase PP2A-2 catalytic subunit-like\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"104822943 serine\/threonine-protein phosphatase PP2A-2 catalytic subunit-like\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"104805249 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"104821949 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"104824034 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"104798709 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"104805916 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"104812210 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"104813945 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"104817931 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"104801146 serine\/threonine protein phosphatase 2A regulatory subunit B''alpha isoform X1\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"104801728 serine\/threonine protein phosphatase 2A regulatory subunit B''beta-like\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"104802847 serine\/threonine protein phosphatase 2A regulatory subunit B''beta\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"104805784 probable serine\/threonine protein phosphatase 2A regulatory subunit B''delta isoform X1\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"104818847 probable serine\/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"104821241 probable serine\/threonine protein phosphatase 2A regulatory subunit B''delta\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"104807730 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104809018 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104809975 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform isoform X1\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104812226 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104815041 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104816360 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104820217 serine\/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104821755 serine\/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104824020 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104824023 serine\/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104825528 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"104826920 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" } ] }, { "name":"Other surveillance factors", "children":[ { "name":"104807342 uncharacterized protein LOC104807342\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"104799125 protein SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"104811190 protein SMG7\tK14409 SMG7; protein SMG7" }, { "name":"104820882 protein SMG9-like\tK18735 SMG9; protein SMG9" }, { "name":"104807415 uncharacterized protein LOC104807415 isoform X1\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" } ] } ] }, { "name":"Factors involved in mRNA localization", "children":[ { "name":"Cargo complex", "children":[ { "name":"104802592 pumilio homolog 24\tK14844 PUF6; pumilio homology domain family member 6" }, { "name":"104803739 uncharacterized protein LOC104803739\tK18740 EXD1; exonuclease 3'-5' domain-containing protein 1" } ] }, { "name":"Factors that have mRNA localization signals" }, { "name":"Trans-acting binding proteins", "children":[ { "name":"104804517 far upstream element-binding protein 1\tK13210 FUBP; far upstream element-binding protein" }, { "name":"104815830 far upstream element-binding protein 1 isoform X1\tK13210 FUBP; far upstream element-binding protein" }, { "name":"104818574 far upstream element-binding protein 1-like\tK13210 FUBP; far upstream element-binding protein" }, { "name":"104800469 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104800612 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104810843 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104814836 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104815750 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104815751 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104826360 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104826361 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"104816825 probable elongation factor 1-gamma 2\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"104823703 probable elongation factor 1-gamma 2\tK03233 EEF1G; elongation factor 1-gamma" } ] }, { "name":"Other mRNA localization factors", "children":[ { "name":"104820753 protein PIR\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"104799253 flowering locus K homology domain-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104799767 KH domain-containing protein HEN4 isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104799840 KH domain-containing protein HEN4-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104799968 KH domain-containing protein At4g18375\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104801800 KH domain-containing protein At4g18375\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104804179 KH domain-containing protein HEN4\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104806133 KH domain-containing protein At4g18375-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104811770 RNA-binding KH domain-containing protein PEPPER isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104813503 RNA-binding KH domain-containing protein PEPPER-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104821023 KH domain-containing protein HEN4 isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104821601 KH domain-containing protein HEN4\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104821664 flowering locus K homology domain isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"104822353 KH domain-containing protein At4g18375-like isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" } ] } ] }, { "name":"mRNA cycle factors", "children":[ { "name":"Common to processing body (P body) and stress granule", "children":[ { "name":"104798616 protein argonaute 2-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104799583 protein argonaute 4-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104800485 protein argonaute 4 isoform X2\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104800561 protein argonaute 5\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104801110 protein argonaute 10\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104809826 protein argonaute 1-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104820330 protein argonaute 1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104822036 protein argonaute 7\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104826132 protein argonaute 6\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"104802872 eukaryotic translation initiation factor NCBP\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104806109 eukaryotic translation initiation factor 4E-1-like isoform X2\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104808876 eukaryotic translation initiation factor\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104814271 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104826604 eukaryotic translation initiation factor-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104827739 eukaryotic translation initiation factor 4E-1\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"104798343 regulator of nonsense transcripts 1 homolog isoform X1\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"104806689 regulator of nonsense transcripts 1 homolog isoform X1\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"104802743 DEAD-box ATP-dependent RNA helicase 37-like isoform X1\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"104820910 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"104824491 DEAD-box ATP-dependent RNA helicase 37-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"104814100 DEAD-box ATP-dependent RNA helicase 8\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"104817022 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"104817284 DEAD-box ATP-dependent RNA helicase 8 isoform X1\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"104811167 decapping 5-like protein isoform X1\tK18749 LSM14; protein LSM14" }, { "name":"104821968 protein decapping 5 isoform X1\tK18749 LSM14; protein LSM14" }, { "name":"104800956 probable RNA helicase SDE3\tK18422 MOV10; helicase MOV-10 [EC:5.6.2.5]" }, { "name":"104804319 transportin-1-like\tK18752 TNPO1; transportin-1" }, { "name":"104819659 transportin-1\tK18752 TNPO1; transportin-1" }, { "name":"104807342 uncharacterized protein LOC104807342\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"104799125 protein SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"104811190 protein SMG7\tK14409 SMG7; protein SMG7" }, { "name":"104805587 zinc finger CCCH domain-containing protein 14\tK18753 ZFP36L; butyrate response factor" }, { "name":"104822595 zinc finger CCCH domain-containing protein 14-like\tK18753 ZFP36L; butyrate response factor" }, { "name":"104827709 zinc finger CCCH domain-containing protein 15\tK18753 ZFP36L; butyrate response factor" }, { "name":"104801196 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104803246 UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104804848 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104805369 heterogeneous nuclear ribonucleoprotein A1 isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104809925 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104810446 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104812212 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104813889 glycine-rich RNA-binding protein 5, mitochondrial\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104815479 UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104818345 glycine-rich RNA-binding protein 3, mitochondrial-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104819032 heterogeneous nuclear ribonucleoproteins A2\/B1-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104819402 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104822722 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104824389 UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104825320 heterogeneous nuclear ribonucleoprotein A3 homolog 2-like isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"104807509 la-related protein 1C-like isoform X1\tK18757 LARP1; la-related protein 1" }, { "name":"104810960 la-related protein 1A\tK18757 LARP1; la-related protein 1" }, { "name":"104819169 la-related protein 1B-like\tK18757 LARP1; la-related protein 1" }, { "name":"104819738 la-related protein 1C isoform X1\tK18757 LARP1; la-related protein 1" } ] }, { "name":"P-body specific factors", "children":[ { "name":"104809882 mRNA-decapping enzyme subunit 2\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"104827300 mRNA-decapping enzyme subunit 2-like\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"104800517 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104820727 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104823498 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104826436 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104822662 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"104801217 sm-like protein LSM2\tK12621 LSM2; U6 snRNA-associated Sm-like protein LSm2" }, { "name":"104812039 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"104813712 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"104818719 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"104821724 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"104818942 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"104827350 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"104802338 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"104805002 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"104809874 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"104805669 sm-like protein LSM8 isoform X1\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"104822183 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"104804190 tubulin alpha chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"104805766 tubulin alpha-6 chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"104807533 tubulin alpha-3 chain\tK07374 TUBA; tubulin alpha" }, { "name":"104807647 tubulin alpha chain isoform X1\tK07374 TUBA; tubulin alpha" }, { "name":"104811075 tubulin alpha-3 chain-like isoform X1\tK07374 TUBA; tubulin alpha" }, { "name":"104824930 tubulin alpha chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"104826499 tubulin alpha-2 chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"104801485 CCR4-NOT transcription complex subunit 1-like\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"104814077 CCR4-NOT transcription complex subunit 1 isoform X1\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"104800634 probable NOT transcription complex subunit VIP2\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"104810794 probable NOT transcription complex subunit VIP2\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"104826337 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"104801500 CCR4-NOT transcription complex subunit 3-like\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104802864 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104805751 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104805989 general negative regulator of transcription subunit 3-like\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104820736 general negative regulator of transcription subunit 3 isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104799481 uncharacterized protein LOC104799481 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104800619 uncharacterized protein LOC104800619\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104810834 uncharacterized protein LOC104810834 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104826353 uncharacterized protein LOC104826353 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104802711 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104814382 carbon catabolite repressor protein 4 homolog 4 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104820670 carbon catabolite repressor protein 4 homolog 2-like isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104820825 carbon catabolite repressor protein 4 homolog 1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104824490 carbon catabolite repressor protein 4 homolog 2-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104799560 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104800833 probable CCR4-associated factor 1 homolog 1\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104803473 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104808180 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104808185 probable CCR4-associated factor 1 homolog 7 isoform X1\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104810931 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104812432 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104814996 probable CCR4-associated factor 1 homolog 10 isoform X1\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104816933 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104817088 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104825446 probable CCR4-associated factor 1 homolog 6\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104827452 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104813649 DIS3-like exonuclease 2 isoform X1\tK18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]" }, { "name":"104803017 uncharacterized protein LOC104803017\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"104808528 uncharacterized protein LOC104808528\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"104813617 protein PAT1 homolog 1 isoform X1\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"104825394 uncharacterized protein LOC104825394\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"104810297 enhancer of mRNA-decapping protein 4-like isoform X1\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"104815682 enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"104809987 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"104806760 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"104815973 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"104799424 DNA-directed RNA polymerase II subunit 7-like\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7" }, { "name":"104810752 DNA-directed RNA polymerase II subunit 7\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7" }, { "name":"104802611 uncharacterized protein LOC104802611 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104805762 uncharacterized protein LOC104805762 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104808149 YTH domain-containing family protein 2 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104813600 uncharacterized protein LOC104813600 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104815708 uncharacterized protein LOC104815708 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104817829 uncharacterized protein LOC104817829 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104820525 uncharacterized protein LOC104820525 isoform X2\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104821501 zinc finger CCCH domain-containing protein 45-like\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"104823783 uncharacterized protein LOC104823783\tK20102 YTHDF; YTH domain-containing family protein" } ] }, { "name":"Stress granule specific factors", "children":[ { "name":"104808067 oligouridylate-binding protein 1B\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"104812263 oligouridylate-binding protein 1B\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"104815617 oligouridylate-binding protein 1C-like\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"104822666 oligouridylate-binding protein 1C-like\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"104798793 polyadenylate-binding protein 8-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104800094 polyadenylate-binding protein 3 isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104804379 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104804545 polyadenylate-binding protein 4-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104807261 LOW QUALITY PROTEIN: polyadenylate-binding protein 2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104807595 polyadenylate-binding protein 4\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104810539 polyadenylate-binding protein 6-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104814171 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104817957 polyadenylate-binding protein 6\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104820493 polyadenylate-binding protein 8-like isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104825367 polyadenylate-binding protein 8 isoform X2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104827503 polyadenylate-binding protein 7 isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"104818351 ras GTPase-activating protein-binding protein 2-like\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"104818974 putative G3BP-like protein\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"104813938 eukaryotic translation initiation factor 2A\tK15026 EIF2A; translation initiation factor 2A" }, { "name":"104803605 eukaryotic translation initiation factor 3 subunit B\tK03253 EIF3B; translation initiation factor 3 subunit B" }, { "name":"104809144 eukaryotic initiation factor 4A-1-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104810359 eukaryotic initiation factor 4A-1\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104811233 eukaryotic initiation factor 4A-9-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104815634 eukaryotic initiation factor 4A-1\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104822642 eukaryotic initiation factor 4A-1-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104822646 eukaryotic initiation factor 4A-1\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"104815234 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 2-like\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"104826525 DEAD-box ATP-dependent RNA helicase 2\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"104804098 eukaryotic translation initiation factor 4B3\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"104824007 eukaryotic translation initiation factor 4B2-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"104825667 eukaryotic translation initiation factor 4B2-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"104802505 eukaryotic translation initiation factor 4G-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104803546 eukaryotic translation initiation factor isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104813539 eukaryotic translation initiation factor-like isoform X2\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104817181 eukaryotic translation initiation factor 4G isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104817820 eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"104812161 receptor for activated C kinase 1A-like\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"104813915 receptor for activated C kinase 1A\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"104820359 receptor for activated C kinase 1B-like\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"104820360 receptor for activated C kinase 1B\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"104821835 receptor for activated C kinase 1B-like\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"104815109 tudor domain-containing protein 3 isoform X1\tK18404 TDRD3; tudor domain-containing protein 3" } ] } ] } ] }, { "name":"mRNA degradation factors", "children":[ { "name":"5'-3' decay", "children":[ { "name":"Decapping complex", "children":[ { "name":"104800517 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104820727 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104823498 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104826436 mRNA-decapping enzyme-like protein\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"104809882 mRNA-decapping enzyme subunit 2\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"104827300 mRNA-decapping enzyme subunit 2-like\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"104814100 DEAD-box ATP-dependent RNA helicase 8\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"104817022 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"104817284 DEAD-box ATP-dependent RNA helicase 8 isoform X1\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"104810297 enhancer of mRNA-decapping protein 4-like isoform X1\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"104815682 enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"104803017 uncharacterized protein LOC104803017\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"104808528 uncharacterized protein LOC104808528\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"104813617 protein PAT1 homolog 1 isoform X1\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"104825394 uncharacterized protein LOC104825394\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" } ] }, { "name":"Lsm complex", "children":[ { "name":"104822662 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"104801217 sm-like protein LSM2\tK12621 LSM2; U6 snRNA-associated Sm-like protein LSm2" }, { "name":"104812039 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"104813712 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"104818719 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"104821724 sm-like protein LSM4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"104818942 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"104827350 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"104802338 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"104805002 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"104809874 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"104805669 sm-like protein LSM8 isoform X1\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"104822183 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" } ] }, { "name":"5' exonucleases", "children":[ { "name":"104809408 5'-3' exoribonuclease 3-like\tK12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]" }, { "name":"104805813 5'-3' exoribonuclease 4\tK20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]" } ] }, { "name":"Other 5'-3' decay factors" } ] }, { "name":"3'-5' decay", "children":[ { "name":"Core exosome factors", "children":[ { "name":"104821579 exosome complex component CSL4\tK07573 CSL4; exosome complex component CSL4" }, { "name":"104815950 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"104801749 putative exosome complex component rrp40\tK03681 RRP40; exosome complex component RRP40" }, { "name":"104807116 putative exosome complex component rrp40\tK03681 RRP40; exosome complex component RRP40" }, { "name":"104815465 putative exosome complex component rrp40\tK03681 RRP40; exosome complex component RRP40" }, { "name":"104824976 putative exosome complex component rrp40\tK03681 RRP40; exosome complex component RRP40" }, { "name":"104805548 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"104817331 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"104814772 exosome complex exonuclease RRP46 homolog\tK12590 RRP46; exosome complex component RRP46" }, { "name":"104826376 exosome complex component RRP41-like\tK12587 MTR3; exosome complex component MTR3" }, { "name":"104819037 exosome complex component RRP42-like\tK12589 RRP42; exosome complex component RRP42" }, { "name":"104823663 exosome complex component RRP43\tK12586 RRP43; exosome complex component RRP43" }, { "name":"104799112 exosome complex component RRP45A-like isoform X1\tK03678 RRP45; exosome complex component RRP45" }, { "name":"104811177 exosome complex component RRP45A-like isoform X1\tK03678 RRP45; exosome complex component RRP45" } ] }, { "name":"Exosome cofactors", "children":[ { "name":"104819712 exosome complex exonuclease RRP44 homolog A\tK12585 DIS3; exosome complex exonuclease DIS3\/RRP44 [EC:3.1.13.-]" }, { "name":"104804880 protein RRP6-like 2\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"104821442 protein RRP6-like 2 isoform X1\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"104814986 nuclear nucleic acid-binding protein C1D\tK12592 C1D; exosome complex protein LRP1" }, { "name":"104810769 uncharacterized protein LOC104810769\tK12593 MPHOSPH6; M-phase phosphoprotein 6, animal type" } ] }, { "name":"TRAMP complex", "children":[ { "name":"104799923 non-canonical poly(A) RNA polymerase PAPD5\tK03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5\/7 [EC:2.7.7.19]" }, { "name":"104808911 DExH-box ATP-dependent RNA helicase DExH10-like isoform X1\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" }, { "name":"104809621 DExH-box ATP-dependent RNA helicase DExH9\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" }, { "name":"104815315 DExH-box ATP-dependent RNA helicase DExH10 isoform X1\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" } ] }, { "name":"Ski complex", "children":[ { "name":"104814901 DExH-box ATP-dependent RNA helicase DExH11 isoform X1\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"104812025 tetratricopeptide repeat protein SKI3 isoform X1\tK12600 SKI3; superkiller protein 3" }, { "name":"104820014 WD repeat-containing protein VIP3\tK12602 WDR61; WD repeat-containing protein 61" } ] }, { "name":"Ccr4-NOT complex", "children":[ { "name":"104802711 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104814382 carbon catabolite repressor protein 4 homolog 4 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104820670 carbon catabolite repressor protein 4 homolog 2-like isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104820825 carbon catabolite repressor protein 4 homolog 1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104824490 carbon catabolite repressor protein 4 homolog 2-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"104801485 CCR4-NOT transcription complex subunit 1-like\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"104814077 CCR4-NOT transcription complex subunit 1 isoform X1\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"104800634 probable NOT transcription complex subunit VIP2\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"104810794 probable NOT transcription complex subunit VIP2\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"104826337 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"104801500 CCR4-NOT transcription complex subunit 3-like\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104802864 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104805751 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104805989 general negative regulator of transcription subunit 3-like\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104820736 general negative regulator of transcription subunit 3 isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"104799481 uncharacterized protein LOC104799481 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104800619 uncharacterized protein LOC104800619\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104810834 uncharacterized protein LOC104810834 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104826353 uncharacterized protein LOC104826353 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"104799560 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104800833 probable CCR4-associated factor 1 homolog 1\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104803473 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104808180 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104808185 probable CCR4-associated factor 1 homolog 7 isoform X1\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104810931 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104812432 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104814996 probable CCR4-associated factor 1 homolog 10 isoform X1\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104816933 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104817088 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104825446 probable CCR4-associated factor 1 homolog 6\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104827452 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"104801000 cell differentiation protein RCD1 homolog\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"104811126 cell differentiation protein RCD1 homolog isoform X1\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"104816040 cell differentiation protein RCD1 homolog\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"104816911 cell differentiation protein RCD1 homolog\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"104817897 cell differentiation protein RCD1 homolog\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"104808966 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 10-like\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"104815266 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 10-like\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"104826553 CCR4-NOT transcription complex subunit 10-like\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"104801149 ABC transporter I family member 21-like\tK12608 CAF16; CCR4-NOT complex subunit CAF16" }, { "name":"104827018 ABC transporter I family member 20\tK12608 CAF16; CCR4-NOT complex subunit CAF16" } ] }, { "name":"Pan complex" }, { "name":"Other 3'-5' decay factors", "children":[ { "name":"104808814 poly(A)-specific ribonuclease PARN-like\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"104822731 poly(A)-specific ribonuclease PARN isoform X1\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"104800815 DExH-box ATP-dependent RNA helicase DExH6\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"104805053 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"104821837 DExH-box ATP-dependent RNA helicase DExH3\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"104822546 DExH-box ATP-dependent RNA helicase DExH1 isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"104826958 DExH-box ATP-dependent RNA helicase DExH3\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"104799326 ERI1 exoribonuclease 3-like\tK18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]" }, { "name":"104826755 3'-5' exoribonuclease 1-like\tK18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]" }, { "name":"104821822 protein NRDE2 homolog isoform X1\tK26109 NRDE2; nuclear exosome regulator NRDE2" }, { "name":"104825324 protein RST1\tK27498 FOCAD; focadhesin" } ] } ] }, { "name":"Other degradation factors", "children":[ { "name":"RNases" } ] } ] } ] }, { "name":"Prokaryotic type", "children":[ { "name":"Bacterial mRNA degradation factors", "children":[ { "name":"RNA degradosome components", "children":[ { "name":"Ribonucreases", "children":[ { "name":"104800478 oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" }, { "name":"104816959 oligoribonuclease-like\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" } ] }, { "name":"Helicases" }, { "name":"Other RNA degradosome components", "children":[ { "name":"104805113 bifunctional enolase 2\/transcriptional activator-like\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"104808296 enolase 1, chloroplastic\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"104826300 cytosolic enolase 3\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"104827486 bifunctional enolase 2\/transcriptional activator\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"104802884 polyribonucleotide nucleotidyltransferase 1, chloroplastic\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"104821088 polyribonucleotide nucleotidyltransferase 2, mitochondrial\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"104803746 ATP-dependent 6-phosphofructokinase 6\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104803999 ATP-dependent 6-phosphofructokinase 1-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104804170 ATP-dependent 6-phosphofructokinase 5, chloroplastic\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104806748 ATP-dependent 6-phosphofructokinase 2\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104811728 ATP-dependent 6-phosphofructokinase 3\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104813484 ATP-dependent 6-phosphofructokinase 3-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104814585 ATP-dependent 6-phosphofructokinase 1 isoform X1\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104817745 ATP-dependent 6-phosphofructokinase 3-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"104818304 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" } ] } ] }, { "name":"Other RNA degradation factors", "children":[ { "name":"Chaperones", "children":[ { "name":"104799745 heat shock 70 kDa protein 10, mitochondrial\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"104804183 heat shock 70 kDa protein 9, mitochondrial\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"104807098 heat shock 70 kDa protein 9, mitochondrial-like\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"104807660 heat shock 70 kDa protein 9, mitochondrial\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"104810977 heat shock 70 kDa protein, mitochondrial-like\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"104813241 uncharacterized protein LOC104813241 isoform X2\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"104813269 heat shock 70 kDa protein 9, mitochondrial-like\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"104800590 ruBisCO large subunit-binding protein subunit alpha, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104801055 chaperonin CPN60-like 1, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104804823 chaperonin CPN60, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104810340 chaperonin CPN60-like 2, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104811719 chaperonin 60 subunit beta 3, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104814358 chaperonin 60 subunit alpha 2, chloroplastic isoform X1\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104815739 ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104821623 chaperonin CPN60, mitochondrial-like\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104822534 chaperonin 60 subunit beta 4, chloroplastic isoform X1\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104822700 chaperonin 60 subunit beta 1, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"104826106 chaperonin CPN60-like 1, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" } ] }, { "name":"Others" }, { "name":"Bacterial Small RNA Regulators" } ] } ] }, { "name":"Archeal mRNA degradation factors", "children":[ { "name":"Exosome components", "children":[ { "name":"Core exosome", "children":[ { "name":"104815950 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"104821579 exosome complex component CSL4\tK07573 CSL4; exosome complex component CSL4" } ] }, { "name":"Cofactors", "children":[ { "name":"104805548 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"104817331 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"104819037 exosome complex component RRP42-like\tK12589 RRP42; exosome complex component RRP42" } ] }, { "name":"Others" } ] } ] } ] } ] }