{ "name":"vvi03019", "children":[ { "name":"Eukaryotic type", "children":[ { "name":"mRNA processing factors", "children":[ { "name":"5' end processing", "children":[ { "name":"Capping factors", "children":[ { "name":"100243615 mRNA cap guanine-N7 methyltransferase 1 isoform X2\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"100252253 mRNA cap guanine-N7 methyltransferase 2\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"100256199 uncharacterized protein LOC100256199\tK13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]" }, { "name":"100244503 cyclin-dependent kinase D-1\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]" }, { "name":"100247566 cyclin-dependent kinase D-3 isoform X1\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]" } ] }, { "name":"Cap binding complex", "children":[ { "name":"100265341 nuclear cap-binding protein subunit 1\tK12882 NCBP1; nuclear cap-binding protein subunit 1" }, { "name":"100265980 nuclear cap-binding protein subunit 2\tK12883 NCBP2; nuclear cap-binding protein subunit 2" } ] } ] }, { "name":"3' end processing", "children":[ { "name":"Pre-mRNA cleavage factor Im (CFIm)", "children":[ { "name":"100250770 pre-mRNA cleavage factor Im 25 kDa subunit 1\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"100261950 pre-mRNA cleavage factor Im 25 kDa subunit 2\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"100266110 pre-mRNA cleavage factor Im 25 kDa subunit 2 isoform X1\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"100246290 uncharacterized protein LOC100246290\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" }, { "name":"100268141 uncharacterized protein LOC100268141 isoform X1\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" } ] }, { "name":"Pre-mRNA cleavage factor IIm (CFIIm)", "children":[ { "name":"100242380 protein CLP1 homolog\tK14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]" }, { "name":"100251089 polyadenylation and cleavage factor homolog 4 isoform X2\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" }, { "name":"100255600 polyadenylation and cleavage factor homolog 4 isoform X1\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" } ] }, { "name":"Cleavage and polyadenylation specificity factor (CPSF) complex", "children":[ { "name":"100256706 cleavage and polyadenylation specificity factor subunit 1 isoform X2\tK14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1" }, { "name":"100267865 cleavage and polyadenylation specificity factor subunit 2 isoform X1\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"100261042 cleavage and polyadenylation specificity factor subunit 3-I isoform X1\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"100266252 cleavage and polyadenylation specificity factor subunit 3-I isoform X1\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"100252331 uncharacterized protein LOC100252331 isoform X1\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"100253258 30-kDa cleavage and polyadenylation specificity factor 30\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"100263567 flowering time control protein FY\tK15542 PFS2; polyadenylation factor subunit 2" }, { "name":"100247531 protein ANTHESIS POMOTING FACTOR 1\tK14962 WDR82; COMPASS component SWD2" }, { "name":"100255744 protein ANTHESIS POMOTING FACTOR 1\tK14962 WDR82; COMPASS component SWD2" }, { "name":"100240794 serine\/threonine-protein phosphatase PP1 isozyme 3 isoform X2\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"100240815 serine\/threonine-protein phosphatase PP1 isoform X2\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"100250219 serine\/threonine-protein phosphatase PP1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"100256994 serine\/threonine-protein phosphatase PP1 isoform X2\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"100258649 serine\/threonine-protein phosphatase PP1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"100259840 serine\/threonine-protein phosphatase PP1 isozyme 4\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"100263930 serine\/threonine-protein phosphatase PP1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"100256509 uncharacterized protein LOC100256509\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" } ] }, { "name":"Cleavage stimulation factor (CSTF) complex", "children":[ { "name":"100267233 cleavage stimulation factor subunit 50 isoform X1\tK14406 CSTF1; cleavage stimulation factor subunit 1" }, { "name":"100256296 cleavage stimulating factor 64\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"100262033 cleavage stimulation factor subunit 77 isoform X1\tK14408 CSTF3; cleavage stimulation factor subunit 3" }, { "name":"100262578 uncharacterized protein LOC100262578\tK06100 SYMPK; symplekin" }, { "name":"100266091 uncharacterized protein LOC100266091 isoform X1\tK06100 SYMPK; symplekin" } ] }, { "name":"U7-dependent histone pre-mRNA processing factors", "children":[ { "name":"100257709 uncharacterized protein LOC100257709\tK11086 SNRPB; small nuclear ribonucleoprotein B and B'" }, { "name":"100250427 small nuclear ribonucleoprotein SmD3b\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"100254787 small nuclear ribonucleoprotein SmD3b\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"109124003 small nuclear ribonucleoprotein SmD3b\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"100257667 uncharacterized protein LOC100257667\tK11097 SNRPE; small nuclear ribonucleoprotein E" }, { "name":"100263985 probable small nuclear ribonucleoprotein F\tK11098 SNRPF; small nuclear ribonucleoprotein F" }, { "name":"100247783 probable small nuclear ribonucleoprotein G\tK11099 SNRPG; small nuclear ribonucleoprotein G" }, { "name":"100267865 cleavage and polyadenylation specificity factor subunit 2 isoform X1\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"100261042 cleavage and polyadenylation specificity factor subunit 3-I isoform X1\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"100266252 cleavage and polyadenylation specificity factor subunit 3-I isoform X1\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"100256296 cleavage stimulating factor 64\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"100262578 uncharacterized protein LOC100262578\tK06100 SYMPK; symplekin" }, { "name":"100266091 uncharacterized protein LOC100266091 isoform X1\tK06100 SYMPK; symplekin" } ] }, { "name":"DRB sensitivity inducing factor (DSIF) complex", "children":[ { "name":"100261013 transcription elongation factor SPT4 homolog 2\tK15171 SUPT4H1; transcription elongation factor SPT4" }, { "name":"100267652 putative transcription elongation factor SPT5 homolog 1\tK15172 SUPT5H; transcription elongation factor SPT5" } ] }, { "name":"N6-methyltransferase complex", "children":[ { "name":"100256414 N6-adenosine-methyltransferase MT-A70-like\tK05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]" }, { "name":"100254343 N6-adenosine-methyltransferase non-catalytic subunit MTB\tK23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit" }, { "name":"100247029 uncharacterized protein LOC100247029 isoform X2\tK11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]" }, { "name":"100246679 FKBP12-interacting protein of 37 kDa isoform X1\tK22824 WTAP; pre-mRNA-splicing regulator WTAP" }, { "name":"100265054 uncharacterized protein LOC100265054\tK22909 ZC3H13; zinc finger CCCH domain-containing protein 13" }, { "name":"100265790 uncharacterized protein LOC100265790 isoform X1\tK22909 ZC3H13; zinc finger CCCH domain-containing protein 13" }, { "name":"100244343 E3 ubiquitin-protein ligase HAKAI homolog\tK15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]" } ] }, { "name":"Poly(A) addition factors", "children":[ { "name":"100252483 nuclear poly(A) polymerase 1 isoform X2\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"100263460 nuclear poly(A) polymerase 4 isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"100267147 nuclear poly(A) polymerase 3\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"100268087 nuclear poly(A) polymerase 1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"100268088 nuclear poly(A) polymerase 4 isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" } ] }, { "name":"Negative regulators of mRNA 3' end processing", "children":[ { "name":"100253255 BRCA1-associated RING domain protein 1 isoform X1\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"100256563 protein BREAST CANCER SUSCEPTIBILITY 1 homolog\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"100259455 zinc finger CCCH domain-containing protein 41\tK13192 RBM26; RNA-binding protein 26" }, { "name":"100250563 RNA demethylase ALKBH9B\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"100256341 RNA demethylase ALKBH10B\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"100256702 RNA demethylase ALKBH9B\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" } ] } ] }, { "name":"Other processing factors", "children":[ { "name":"100256009 KIN17-like protein\tK13102 KIN; DNA\/RNA-binding protein KIN17" }, { "name":"100256576 uncharacterized protein LOC100256576 isoform X1\tK23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]" }, { "name":"100254817 serrate RNA effector molecule\tK27103 SRRT; serrate RNA effector molecule" }, { "name":"100266053 serrate RNA effector molecule isoform X1\tK27103 SRRT; serrate RNA effector molecule" } ] } ] }, { "name":"mRNA surveillance and transport factors", "children":[ { "name":"Transport factors", "children":[ { "name":"EJC complex", "children":[ { "name":"100260882 RNA-binding protein Y14\tK12876 RBM8A; RNA-binding protein 8A" }, { "name":"100263147 protein mago nashi homolog 2\tK12877 MAGOH; protein mago nashi" }, { "name":"100257009 THO complex subunit 4D\tK12881 THOC4; THO complex subunit 4" }, { "name":"100257081 THO complex subunit 4A\tK12881 THOC4; THO complex subunit 4" }, { "name":"100250852 DEAD-box ATP-dependent RNA helicase 15\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"100268003 DEAD-box ATP-dependent RNA helicase 15 isoform X2\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"100255368 eukaryotic initiation factor 4A-3\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"100250532 histone deacetylase complex subunit SAP18\tK14324 SAP18; histone deacetylase complex subunit SAP18" }, { "name":"100245237 uncharacterized protein LOC100245237\tK13114 PNN; pinin" }, { "name":"100248897 uncharacterized protein LOC100248897 isoform X1\tK12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus" }, { "name":"100252593 uncharacterized protein LOC100252593 isoform X1\tK12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus" }, { "name":"100267894 serine\/arginine-rich splicing factor SR45\tK14325 RNPS1; RNA-binding protein with serine-rich domain 1" }, { "name":"100246732 uncharacterized protein LOC100246732\tK13171 SRRM1; serine\/arginine repetitive matrix protein 1" } ] }, { "name":"TREX complex", "children":[ { "name":"100250474 THO complex subunit 1 isoform X1\tK12878 THOC1; THO complex subunit 1" }, { "name":"100262610 THO complex subunit 1 isoform X2\tK12878 THOC1; THO complex subunit 1" }, { "name":"100254201 THO complex subunit 2\tK12879 THOC2; THO complex subunit 2" }, { "name":"100241262 THO complex subunit 3\tK12880 THOC3; THO complex subunit 3" }, { "name":"100257009 THO complex subunit 4D\tK12881 THOC4; THO complex subunit 4" }, { "name":"100257081 THO complex subunit 4A\tK12881 THOC4; THO complex subunit 4" }, { "name":"100242063 THO complex subunit 5B isoform X1\tK13174 THOC5; THO complex subunit 5" } ] }, { "name":"TREX-2 complex", "children":[ { "name":"100261071 enhanced ethylene response protein 5\tK23801 PCID2; nuclear mRNA export protein PCID2\/THP1" }, { "name":"100267214 protein DELETION OF SUV3 SUPPRESSOR 1(I)\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"100258382 transcription and mRNA export factor ENY2\tK11368 ENY2; enhancer of yellow 2 transcription factor" }, { "name":"100259082 SAC3 family protein C isoform X1\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"100266559 SAC3 family protein B\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"100852523 SAC3 family protein C isoform X2\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"100852594 SAC3 family protein C isoform X2\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"100852775 SAC3 family protein C isoform X1\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"100853276 SAC3 family protein C isoform X2\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"132254873 SAC3 family protein C-like\tK23719 SAC3; nuclear mRNA export protein SAC3" } ] }, { "name":"Nuclear pore complex", "children":[ { "name":"100251875 nuclear-pore anchor isoform X1\tK09291 TPR; nucleoprotein TPR" }, { "name":"100250245 protein RAE1\tK14298 RAE1; mRNA export factor" }, { "name":"100250787 protein RAE1\tK14298 RAE1; mRNA export factor" }, { "name":"100249128 protein transport protein SEC13 homolog B\tK14004 SEC13; protein transport protein SEC13" }, { "name":"100261919 protein transport protein SEC13 homolog B\tK14004 SEC13; protein transport protein SEC13" }, { "name":"104877626 protein transport protein SEC13 homolog B\tK14004 SEC13; protein transport protein SEC13" }, { "name":"100256006 nuclear pore complex protein NUP85\tK14304 NUP85; nuclear pore complex protein Nup85" }, { "name":"100251872 nuclear pore complex protein NUP43\tK14305 NUP43; nuclear pore complex protein Nup43" }, { "name":"100261574 uncharacterized protein LOC100261574\tK14295 NUP50; nuclear pore complex protein Nup50" }, { "name":"100242090 nuclear pore complex protein NUP54\tK14308 NUP54; nuclear pore complex protein Nup54" }, { "name":"100265039 nuclear pore complex protein NUP62\tK14306 NUP62; nuclear pore complex protein Nup62" }, { "name":"100265724 nuclear pore complex protein NUP88\tK14318 NUP88; nuclear pore complex protein Nup88" }, { "name":"100252000 nuclear pore complex protein NUP93A\tK14309 NUP93; nuclear pore complex protein Nup93" }, { "name":"100249633 nuclear pore complex protein NUP98A\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"100257675 nuclear pore complex protein NUP96\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"100242984 nuclear pore complex protein NUP107 isoform X1\tK14301 NUP107; nuclear pore complex protein Nup107" }, { "name":"100249432 nuclear pore complex protein NUP133\tK14300 NUP133; nuclear pore complex protein Nup133" }, { "name":"100264071 uncharacterized protein LOC100264071\tK14311 NUP188; nuclear pore complex protein Nup188" }, { "name":"100243944 nuclear pore complex protein NUP155 isoform X2\tK14312 NUP155; nuclear pore complex protein Nup155" }, { "name":"100250223 nuclear pore complex protein NUP160\tK14303 NUP160; nuclear pore complex protein Nup160" }, { "name":"100244686 nuclear pore complex protein NUP35\tK14313 NUP35; nuclear pore complex protein Nup53" }, { "name":"100266475 nuclear pore complex protein NUP205 isoform X1\tK14310 NUP205; nuclear pore complex protein Nup205" }, { "name":"100257580 nuclear pore complex protein GP210\tK14314 NUP210; nuclear pore complex protein Nup210" }, { "name":"100245011 nuclear pore complex protein NUP214\tK14317 NUP214; nuclear pore complex protein Nup214" }, { "name":"100855059 nuclear pore complex protein NUP58\tK14307 NUPL1; nucleoporin p58\/p45" }, { "name":"100243153 zinc finger CCCH domain-containing protein 16 isoform X2\tK14321 NUPL2; nucleoporin-like protein 2" }, { "name":"100256014 uncharacterized protein LOC100256014\tK14315 NDC1; nucleoporin NDC1" }, { "name":"100263869 protein SEH1 isoform X1\tK14299 SEH1; nucleoporin SEH1" }, { "name":"100248313 aladin isoform X1\tK14320 AAAS; aladin" }, { "name":"100245667 mRNA export factor GLE1\tK18723 GLE1; nucleoporin GLE1" } ] }, { "name":"Ran-mediated transport factors", "children":[ { "name":"100250818 GTP-binding nuclear protein Ran-3\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"100266996 GTP-binding nuclear protein Ran-3\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"100852411 GTP-binding nuclear protein Ran1-like\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"100241512 plant UBX domain-containing protein 10\tK18726 FAF2; FAS-associated factor 2" }, { "name":"100263375 plant UBX domain-containing protein 10\tK18726 FAF2; FAS-associated factor 2" }, { "name":"100246467 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"100258668 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"100265402 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"100245395 uncharacterized protein LOC100245395\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"100246881 uncharacterized protein LOC100246881 isoform X2\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"100258529 uncharacterized protein LOC100258529 isoform X1\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"100256288 protein EXPORTIN 1A\tK14290 XPO1; exportin-1" }, { "name":"100254054 uncharacterized protein LOC100254054 isoform X1\tK18460 XPO7; exportin-7" }, { "name":"100265499 uncharacterized protein LOC100265499 isoform X1\tK18460 XPO7; exportin-7" }, { "name":"100244330 RAN GTPase-activating protein 1\tK14319 RANGAP1; Ran GTPase-activating protein 1" }, { "name":"100259658 RAN GTPase-activating protein 2\tK14319 RANGAP1; Ran GTPase-activating protein 1" }, { "name":"100248590 nuclear transport factor 2B\tK28773 NUTF2; nuclear transport factor 2" }, { "name":"100252245 nuclear transport factor 2B\tK28773 NUTF2; nuclear transport factor 2" } ] }, { "name":"eIF4F and regulatory proteins", "children":[ { "name":"100258939 eukaryotic translation initiation factor NCBP\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"100259631 eukaryotic translation initiation factor isoform X2\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"100262414 eukaryotic translation initiation factor 4E-1 isoform X2\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"100244028 uncharacterized protein LOC100244028\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100244066 uncharacterized protein LOC100244066 isoform X2\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100249159 eukaryotic initiation factor 4A-11\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100261822 eukaryotic initiation factor 4A-8\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100250837 eukaryotic translation initiation factor\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"100260481 eukaryotic translation initiation factor\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"100261523 eukaryotic translation initiation factor 4G isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"100242447 eukaryotic translation initiation factor 4B2 isoform X2\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"100262348 eukaryotic translation initiation factor 4B3\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"100253517 protein PIR isoform X1\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"100240950 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100245822 DEAD-box ATP-dependent RNA helicase 52C\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100250155 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100250337 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100254102 uncharacterized protein LOC100254102\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"100256726 uncharacterized protein LOC100256726 isoform X3\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"100241923 polyadenylate-binding protein 2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100255846 polyadenylate-binding protein 8\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100256670 polyadenylate-binding protein 6 isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100262903 polyadenylate-binding protein 2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100263065 polyadenylate-binding protein 3\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100267544 polyadenylate-binding protein 7\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100253599 DExH-box ATP-dependent RNA helicase DExH11\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"100252472 translation machinery-associated protein 22 isoform X2\tK24272 DENR; density-regulated protein" }, { "name":"100264692 translation machinery-associated protein 22 isoform X2\tK24272 DENR; density-regulated protein" } ] }, { "name":"APOBEC1-ACF complex" }, { "name":"Other transport factors", "children":[ { "name":"100249740 partner of Y14 and mago\tK14294 WIBG; partner of Y14 and mago" }, { "name":"100240900 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100243393 UBP1-associated protein 2A\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100243489 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100246013 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100248626 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100256940 glycine-rich RNA-binding protein blt801\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100258161 UBP1-associated protein 2A\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100263294 UBP1-associated protein 2A\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100265210 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100266260 UBP1-associated protein 2B isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100266965 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100246008 heterogeneous nuclear ribonucleoprotein 1 isoform X2\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"100247389 uncharacterized protein LOC100247389\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"100255821 uncharacterized protein LOC100255821\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"100257917 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"100263471 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"100267443 heterogeneous nuclear ribonucleoprotein 1 isoform X2\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"132254414 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"100262342 uncharacterized protein LOC100262342 isoform X3\tK14416 HBS1; elongation factor 1 alpha-like protein" }, { "name":"100241884 protein PELOTA 1\tK06965 PELO; protein pelota" }, { "name":"100256390 protein PELOTA 1\tK06965 PELO; protein pelota" }, { "name":"100853958 protein PELOTA 1-like\tK06965 PELO; protein pelota" }, { "name":"100242522 polyadenylate-binding protein 2\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"100245696 polyadenylate-binding protein 2\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"100258174 polyadenylate-binding protein 3 isoform X2\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"100855316 polyadenylate-binding protein 2 isoform X2\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"100247027 DEAD-box ATP-dependent RNA helicase 38 isoform X2\tK18655 DDX19; ATP-dependent RNA helicase DDX19\/DBP5 [EC:5.6.2.7]" }, { "name":"100257270 DEAD-box ATP-dependent RNA helicase 38\tK18655 DDX19; ATP-dependent RNA helicase DDX19\/DBP5 [EC:5.6.2.7]" }, { "name":"100854880 DEAD-box ATP-dependent RNA helicase 38 isoform X4\tK18655 DDX19; ATP-dependent RNA helicase DDX19\/DBP5 [EC:5.6.2.7]" }, { "name":"100267056 uncharacterized protein LOC100267056\tK12867 SYF1; pre-mRNA-splicing factor SYF1" }, { "name":"100249849 protein MODIFIER OF SNC1 11 isoform X1\tK18732 SARNP; SAP domain-containing ribonucleoprotein" }, { "name":"100246785 transcription factor Pur-alpha 1\tK21772 PURA; transcriptional activator protein Pur-alpha" }, { "name":"100258656 SAC3 family protein A isoform X1\tK23802 LENG8; SAC3 family protein LENG8\/THP3" } ] } ] }, { "name":"Surveillance factors", "children":[ { "name":"Surveillance complex", "children":[ { "name":"100242471 eukaryotic peptide chain release factor subunit 1-3\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"100248954 eukaryotic peptide chain release factor subunit 1-3\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"100267567 eukaryotic peptide chain release factor subunit 1-3\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"100249117 uncharacterized protein LOC100249117\tK03267 ERF3; peptide chain release factor subunit 3" }, { "name":"100264343 regulator of nonsense transcripts 1 homolog isoform X2\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"100258101 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"100852735 regulator of nonsense transcripts UPF3 isoform X4\tK14328 UPF3; regulator of nonsense transcripts 3" } ] }, { "name":"Protein phosphatase 2A", "children":[ { "name":"100256981 serine\/threonine-protein phosphatase PP2A-2 catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"100262164 serine\/threonine-protein phosphatase PP2A catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"100264866 serine\/threonine-protein phosphatase PP2A-2 catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"100267243 serine\/threonine-protein phosphatase PP2A catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"100853524 serine\/threonine-protein phosphatase PP2A catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"100244069 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"100266203 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"100243351 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"100257641 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"100265267 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"100266437 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"100246385 serine\/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"100247694 probable serine\/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"100250118 serine\/threonine protein phosphatase 2A regulatory subunit B''beta\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"100241019 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"100245943 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"100247024 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"100250839 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform isoform X1\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"100250858 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"100252451 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"100253747 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform isoform X1\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"100258598 serine\/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" } ] }, { "name":"Other surveillance factors", "children":[ { "name":"100260579 uncharacterized protein LOC100260579\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"100264171 nonsense-mediated mRNA decay factor SMG7\tK14409 SMG7; protein SMG7" }, { "name":"100267161 nonsense-mediated mRNA decay factor SMG7\tK14409 SMG7; protein SMG7" }, { "name":"100267175 uncharacterized protein LOC100267175 isoform X1\tK18734 SMG8; protein SMG8" }, { "name":"100245949 uncharacterized protein LOC100245949 isoform X2\tK18735 SMG9; protein SMG9" }, { "name":"100254102 uncharacterized protein LOC100254102\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"100256726 uncharacterized protein LOC100256726 isoform X3\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" } ] } ] }, { "name":"Factors involved in mRNA localization", "children":[ { "name":"Cargo complex", "children":[ { "name":"100255113 pumilio homolog 24\tK14844 PUF6; pumilio homology domain family member 6" }, { "name":"100259526 uncharacterized protein LOC100259526 isoform X2\tK18740 EXD1; exonuclease 3'-5' domain-containing protein 1" }, { "name":"100263418 uncharacterized protein LOC100263418\tK18740 EXD1; exonuclease 3'-5' domain-containing protein 1" } ] }, { "name":"Factors that have mRNA localization signals" }, { "name":"Trans-acting binding proteins", "children":[ { "name":"100253453 uncharacterized protein LOC100253453 isoform X2\tK13210 FUBP; far upstream element-binding protein" }, { "name":"100259454 uncharacterized protein LOC100259454\tK13210 FUBP; far upstream element-binding protein" }, { "name":"100244821 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"100246711 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"100256979 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"100261589 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"100246571 elongation factor 1-gamma\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"100264325 elongation factor 1-gamma\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"100255407 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1\tK15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1" } ] }, { "name":"Other mRNA localization factors", "children":[ { "name":"100253517 protein PIR isoform X1\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"100242157 RNA-binding KH domain-containing protein PEPPER\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100242733 flowering locus K homology domain\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100251267 KH domain-containing protein HEN4\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100253195 KH domain-containing protein At4g18375\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100256424 uncharacterized protein LOC100256424 isoform X5\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100258944 RNA-binding KH domain-containing protein RCF3 isoform X2\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100261236 KH domain-containing protein At4g18375\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100261643 RNA-binding KH domain-containing protein PEPPER\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100261680 KH domain-containing protein At4g18375\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100265365 RNA-binding KH domain-containing protein RCF3 isoform X3\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100266515 flowering locus K homology domain isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"100267715 KH domain-containing protein HEN4 isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" } ] } ] }, { "name":"mRNA cycle factors", "children":[ { "name":"Common to processing body (P body) and stress granule", "children":[ { "name":"100240850 protein argonaute 2\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100241029 protein argonaute 4\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100242077 protein argonaute 7\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100243183 protein argonaute 16\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100244311 protein argonaute 10\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100249360 protein argonaute 2 isoform X1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100250362 protein argonaute 5\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100251084 protein argonaute 2 isoform X1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100256320 protein argonaute 1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100258447 protein argonaute 5\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100260151 protein argonaute 4A\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100264433 protein argonaute 7\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100268067 protein argonaute PNH1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100268121 protein argonaute 4A isoform X1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"100258939 eukaryotic translation initiation factor NCBP\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"100259631 eukaryotic translation initiation factor isoform X2\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"100262414 eukaryotic translation initiation factor 4E-1 isoform X2\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"100264343 regulator of nonsense transcripts 1 homolog isoform X2\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"100240950 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100245822 DEAD-box ATP-dependent RNA helicase 52C\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100250155 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100250337 DEAD-box ATP-dependent RNA helicase 37\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"100241111 DEAD-box ATP-dependent RNA helicase 8\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"100251721 DEAD-box ATP-dependent RNA helicase 8\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"100242198 protein decapping 5\tK18749 LSM14; protein LSM14" }, { "name":"100244212 protein decapping 5\tK18749 LSM14; protein LSM14" }, { "name":"100247679 probable RNA helicase SDE3\tK18422 MOV10; helicase MOV-10 [EC:5.6.2.5]" }, { "name":"100245339 transportin-1 isoform X3\tK18752 TNPO1; transportin-1" }, { "name":"100250435 transportin-1 isoform X1\tK18752 TNPO1; transportin-1" }, { "name":"100260579 uncharacterized protein LOC100260579\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"100264171 nonsense-mediated mRNA decay factor SMG7\tK14409 SMG7; protein SMG7" }, { "name":"100267161 nonsense-mediated mRNA decay factor SMG7\tK14409 SMG7; protein SMG7" }, { "name":"100262912 uncharacterized protein LOC100262912\tK15308 TTP; tristetraprolin" }, { "name":"100242335 zinc finger CCCH domain-containing protein 15\tK18753 ZFP36L; butyrate response factor" }, { "name":"100265124 zinc finger CCCH domain-containing protein 15\tK18753 ZFP36L; butyrate response factor" }, { "name":"100240900 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100243393 UBP1-associated protein 2A\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100243489 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100246013 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100248626 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100256940 glycine-rich RNA-binding protein blt801\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100258161 UBP1-associated protein 2A\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100263294 UBP1-associated protein 2A\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100265210 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100266260 UBP1-associated protein 2B isoform X1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100266965 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"100243746 la-related protein 1C\tK18757 LARP1; la-related protein 1" }, { "name":"100243783 la-related protein 1C isoform X1\tK18757 LARP1; la-related protein 1" }, { "name":"100254731 la-related protein 1A\tK18757 LARP1; la-related protein 1" }, { "name":"100258658 la-related protein 1A isoform X1\tK18757 LARP1; la-related protein 1" } ] }, { "name":"P-body specific factors", "children":[ { "name":"100249543 mRNA-decapping enzyme subunit 2\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"100242537 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"100262105 mRNA-decapping enzyme-like protein isoform X2\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"100249828 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"100250857 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"132254654 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"100253870 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"100241738 probable U6 snRNA-associated Sm-like protein LSm4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"100242667 probable U6 snRNA-associated Sm-like protein LSm4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"100264807 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"100259432 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"100855332 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"100247782 sm-like protein LSM8 isoform X2\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"100247081 tubulin alpha-4 chain\tK07374 TUBA; tubulin alpha" }, { "name":"100247366 tubulin alpha chain\tK07374 TUBA; tubulin alpha" }, { "name":"100256600 tubulin alpha chain\tK07374 TUBA; tubulin alpha" }, { "name":"100258974 tubulin alpha-5 chain\tK07374 TUBA; tubulin alpha" }, { "name":"100260286 tubulin alpha-5 chain\tK07374 TUBA; tubulin alpha" }, { "name":"100854977 tubulin alpha chain\tK07374 TUBA; tubulin alpha" }, { "name":"100256945 uncharacterized protein LOC100256945 isoform X5\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"100261590 uncharacterized protein LOC100261590\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"100248449 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"100263354 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"100253711 uncharacterized protein LOC100253711 isoform X2\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"100267264 general negative regulator of transcription subunit 4\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"100256249 carbon catabolite repressor protein 4 homolog 4 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"100265801 carbon catabolite repressor protein 4 homolog 1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"100267801 carbon catabolite repressor protein 4 homolog 1 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"100244870 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100248407 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100249306 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100250028 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100253485 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100255985 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100267180 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100260740 DIS3-like exonuclease 2\tK18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]" }, { "name":"100255521 protein PAT1 homolog 2\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"100267869 protein PAT1 homolog isoform X1\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"100241190 enhancer of mRNA-decapping protein 4\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"100259985 enhancer of mRNA-decapping protein 4\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"100258101 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"100852735 regulator of nonsense transcripts UPF3 isoform X4\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"100248358 DNA-directed RNA polymerase II subunit RPB7\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7" }, { "name":"100241633 YTH domain-containing protein ECT4 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"100248968 YTH domain-containing protein ECT1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"100249242 YTH domain-containing protein ECT1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"100249606 YTH domain-containing protein ECT4 isoform X4\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"100258644 YTH domain-containing protein ECT1 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"100854837 YTH domain-containing protein ECT4 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" } ] }, { "name":"Stress granule specific factors", "children":[ { "name":"100245579 RNA-binding protein 208 isoform X1\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"100259344 oligouridylate-binding protein 1 isoform X1\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"100260069 oligouridylate-binding protein 1B isoform X1\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"100241923 polyadenylate-binding protein 2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100255846 polyadenylate-binding protein 8\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100256670 polyadenylate-binding protein 6 isoform X1\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100262903 polyadenylate-binding protein 2\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100263065 polyadenylate-binding protein 3\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100267544 polyadenylate-binding protein 7\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"100250757 nuclear transport factor 2 isoform X2\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"100255231 nuclear transport factor 2 isoform X1\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"100258271 nuclear transport factor 2 isoform X1\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"100264206 nuclear transport factor 2\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"100249064 eukaryotic translation initiation factor 2A\tK15026 EIF2A; translation initiation factor 2A" }, { "name":"100244090 eukaryotic translation initiation factor 3 subunit B\tK03253 EIF3B; translation initiation factor 3 subunit B" }, { "name":"100244028 uncharacterized protein LOC100244028\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100244066 uncharacterized protein LOC100244066 isoform X2\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100249159 eukaryotic initiation factor 4A-11\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100261822 eukaryotic initiation factor 4A-8\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"100255368 eukaryotic initiation factor 4A-3\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"100242447 eukaryotic translation initiation factor 4B2 isoform X2\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"100262348 eukaryotic translation initiation factor 4B3\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"100250837 eukaryotic translation initiation factor\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"100260481 eukaryotic translation initiation factor\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"100261523 eukaryotic translation initiation factor 4G isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"100249027 small ribosomal subunit protein RACK1\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"100243995 uncharacterized protein LOC100243995\tK18404 TDRD3; tudor domain-containing protein 3" } ] } ] } ] }, { "name":"mRNA degradation factors", "children":[ { "name":"5'-3' decay", "children":[ { "name":"Decapping complex", "children":[ { "name":"100242537 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"100262105 mRNA-decapping enzyme-like protein isoform X2\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"100249543 mRNA-decapping enzyme subunit 2\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"100241111 DEAD-box ATP-dependent RNA helicase 8\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"100251721 DEAD-box ATP-dependent RNA helicase 8\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"100241190 enhancer of mRNA-decapping protein 4\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"100259985 enhancer of mRNA-decapping protein 4\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"100255521 protein PAT1 homolog 2\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"100267869 protein PAT1 homolog isoform X1\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" } ] }, { "name":"Lsm complex", "children":[ { "name":"100249828 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"100250857 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"132254654 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"100253870 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"100241738 probable U6 snRNA-associated Sm-like protein LSm4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"100242667 probable U6 snRNA-associated Sm-like protein LSm4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"100264807 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"100259432 sm-like protein LSM36B\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"100855332 sm-like protein LSM7\tK12626 LSM7; U6 snRNA-associated Sm-like protein LSm7" }, { "name":"100247782 sm-like protein LSM8 isoform X2\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" } ] }, { "name":"5' exonucleases", "children":[ { "name":"100260845 5'-3' exoribonuclease 3\tK12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]" }, { "name":"100263222 5'-3' exoribonuclease 3 isoform X2\tK12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]" }, { "name":"100253751 5'-3' exoribonuclease 4\tK20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]" } ] }, { "name":"Other 5'-3' decay factors" } ] }, { "name":"3'-5' decay", "children":[ { "name":"Core exosome factors", "children":[ { "name":"100263947 uncharacterized protein LOC100263947\tK07573 CSL4; exosome complex component CSL4" }, { "name":"100244305 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"100241656 uncharacterized protein LOC100241656\tK03681 RRP40; exosome complex component RRP40" }, { "name":"100265488 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"100262803 exosome complex exonuclease RRP46 homolog\tK12590 RRP46; exosome complex component RRP46" }, { "name":"100251840 exosome complex component RRP41-like\tK12587 MTR3; exosome complex component MTR3" }, { "name":"100261229 uncharacterized protein LOC100261229\tK12589 RRP42; exosome complex component RRP42" }, { "name":"100253817 uncharacterized protein LOC100253817\tK12586 RRP43; exosome complex component RRP43" }, { "name":"100265860 exosome complex component RRP45A isoform X1\tK03678 RRP45; exosome complex component RRP45" } ] }, { "name":"Exosome cofactors", "children":[ { "name":"100267912 exosome complex exonuclease RRP44 homolog A\tK12585 DIS3; exosome complex exonuclease DIS3\/RRP44 [EC:3.1.13.-]" }, { "name":"100265580 protein RRP6-like 2\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"100243947 uncharacterized protein LOC100243947\tK12592 C1D; exosome complex protein LRP1" }, { "name":"100267367 uncharacterized protein LOC100267367 isoform X2\tK12593 MPHOSPH6; M-phase phosphoprotein 6, animal type" } ] }, { "name":"TRAMP complex", "children":[ { "name":"100259006 uncharacterized protein LOC100259006\tK03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5\/7 [EC:2.7.7.19]" }, { "name":"100246661 DExH-box ATP-dependent RNA helicase DExH10 isoform X1\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" }, { "name":"100258243 DExH-box ATP-dependent RNA helicase DExH9 isoform X1\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" } ] }, { "name":"Ski complex", "children":[ { "name":"100253599 DExH-box ATP-dependent RNA helicase DExH11\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"100259801 tetratricopeptide repeat protein SKI3 isoform X2\tK12600 SKI3; superkiller protein 3" }, { "name":"100257752 WD repeat-containing protein VIP3\tK12602 WDR61; WD repeat-containing protein 61" } ] }, { "name":"Ccr4-NOT complex", "children":[ { "name":"100256249 carbon catabolite repressor protein 4 homolog 4 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"100265801 carbon catabolite repressor protein 4 homolog 1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"100267801 carbon catabolite repressor protein 4 homolog 1 isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"100256945 uncharacterized protein LOC100256945 isoform X5\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"100261590 uncharacterized protein LOC100261590\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"100248449 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"100263354 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"100253711 uncharacterized protein LOC100253711 isoform X2\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"100267264 general negative regulator of transcription subunit 4\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"100244870 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100248407 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100249306 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100250028 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100253485 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100255985 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100267180 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"100265941 uncharacterized protein LOC100265941 isoform X1\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"100267046 uncharacterized protein LOC100267046\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"104880715 uncharacterized protein LOC104880715\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"100252496 uncharacterized protein LOC100252496\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"100259555 ABC transporter I family member 20 isoform X1\tK12608 CAF16; CCR4-NOT complex subunit CAF16" }, { "name":"100260023 ABC transporter I family member 19\tK12608 CAF16; CCR4-NOT complex subunit CAF16" } ] }, { "name":"Pan complex" }, { "name":"Other 3'-5' decay factors", "children":[ { "name":"100258377 poly(A)-specific ribonuclease PARN\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"100855155 poly(A)-specific ribonuclease PARN-like\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"100244105 DExH-box ATP-dependent RNA helicase DExH3\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"100251493 DExH-box ATP-dependent RNA helicase DExH3 isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"100252028 DExH-box ATP-dependent RNA helicase DExH1 isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"100260829 DExH-box ATP-dependent RNA helicase DExH6\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"100264518 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"100263388 uncharacterized protein LOC100263388 isoform X1\tK18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]" }, { "name":"100853630 3'-5' exonuclease eri1\tK18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]" }, { "name":"100255247 uncharacterized protein LOC100255247\tK26109 NRDE2; nuclear exosome regulator NRDE2" }, { "name":"100245681 protein RST1\tK27498 FOCAD; focadhesin" } ] } ] }, { "name":"Other degradation factors", "children":[ { "name":"RNases" } ] } ] } ] }, { "name":"Prokaryotic type", "children":[ { "name":"Bacterial mRNA degradation factors", "children":[ { "name":"RNA degradosome components", "children":[ { "name":"Ribonucreases", "children":[ { "name":"100251263 oligoribonuclease isoform X1\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" } ] }, { "name":"Helicases", "children":[ { "name":"100262056 uncharacterized protein LOC100262056\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" } ] }, { "name":"Other RNA degradosome components", "children":[ { "name":"100242642 enolase 1\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"100254950 enolase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"100256026 enolase 1, chloroplastic\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"100265663 cytosolic enolase 3\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"100257571 polyribonucleotide nucleotidyltransferase 2, mitochondrial\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"100265692 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"100242301 ATP-dependent 6-phosphofructokinase 5, chloroplastic\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"100242517 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X2\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"100243946 ATP-dependent 6-phosphofructokinase 3\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"100245746 ATP-dependent 6-phosphofructokinase 6\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"100251605 ATP-dependent 6-phosphofructokinase 2\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"100853702 ATP-dependent 6-phosphofructokinase 5, chloroplastic\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" } ] } ] }, { "name":"Other RNA degradation factors", "children":[ { "name":"Chaperones", "children":[ { "name":"100248447 heat shock 70 kDa protein, mitochondrial\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"100250929 heat shock 70 kDa protein, mitochondrial isoform X1\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"100244356 chaperonin CPN60-2, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"100251252 chaperonin 60 subunit beta 4, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"100253324 ruBisCO large subunit-binding protein subunit alpha\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"100257653 chaperonin 60 subunit alpha 2, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"100261815 ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X2\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"100263832 ruBisCO large subunit-binding protein subunit beta, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"100266920 chaperonin CPN60-like 2, mitochondrial isoform X1\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" } ] }, { "name":"Others" }, { "name":"Bacterial Small RNA Regulators" } ] } ] }, { "name":"Archeal mRNA degradation factors", "children":[ { "name":"Exosome components", "children":[ { "name":"Core exosome", "children":[ { "name":"100244305 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"100263947 uncharacterized protein LOC100263947\tK07573 CSL4; exosome complex component CSL4" } ] }, { "name":"Cofactors", "children":[ { "name":"100265488 exosome complex component RRP41 homolog\tK11600 RRP41; exosome complex component RRP41" }, { "name":"100261229 uncharacterized protein LOC100261229\tK12589 RRP42; exosome complex component RRP42" } ] }, { "name":"Others" } ] } ] } ] } ] }