+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Anopheles stephensi (Asian malaria mosquito)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 118508582 mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 118511535 mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 118504956 cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 118506062 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 118510067 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 118502405 RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 118502508 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 118517516 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 118510220 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 118509672 cleavage and polyadenylation specificity factor subunit CG7185 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 118517010 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 118508920 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 118505285 uncharacterized protein LOC118505285 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 118504173 cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 118508298 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 118507945 cleavage and polyadenylation specificity factor 73 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118505090 cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 118505644 pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 118506519 pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 118508964 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 118516590 serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118505404 serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118505796 serine/threonine-protein phosphatase alpha-2 isoform isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118507331 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 118505822 cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 118507295 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 118503191 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 118506845 protein suppressor of forked K14408 CSTF3; cleavage stimulation factor subunit 3
E 118503706 symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 118512900 small nuclear ribonucleoprotein-associated protein B K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 118503366 small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 118508102 probable small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 118504978 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 118505017 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 118507630 U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 118510138 U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 118508298 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 118507945 cleavage and polyadenylation specificity factor 73 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118507295 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 118503191 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 118503706 symplekin K06100 SYMPK; symplekin
E 118502966 histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 118513480 uncharacterized protein LOC118513480 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 118510562 transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 118509637 transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 118510147 N6-adenosine-methyltransferase MT-A70-like protein isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 118513748 N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 118512717 N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 118504839 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 118517360 protein virilizer K22910 VIRMA; protein virilizer
E 118511517 RNA-binding protein spenito isoform X1 K13190 RBM15; RNA-binding protein 15
E 118517368 E3 ubiquitin-protein ligase Hakai-like K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
E 118505077 E3 ubiquitin-protein ligase Hakai-like K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 118506994 poly(A) RNA polymerase GLD2-like K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 118510582 zinc finger protein swm K13192 RBM26; RNA-binding protein 26
E 118508003 TAR DNA-binding protein 43-like K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 118517644 DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 118505777 methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 118509670 terminal nucleotidyltransferase 5C isoform X1 K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 118508346 microtubule-associated protein futsch isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 118506213 serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 118509532 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 118508153 protein mago nashi K12877 MAGOH; protein mago nashi
E 118511559 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 118513335 ATP-dependent RNA helicase WM6 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 118505419 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 118508426 coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 118506838 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 118502663 pinin K13114 PNN; pinin
E 118512594 apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 118510634 RNA-binding protein with serine-rich domain 1-A K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 118509406 serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 118506901 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 118510911 THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 118502551 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 118511559 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 118512372 THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 118510557 THO complex subunit 6 K13175 THOC6; THO complex subunit 6
E 118516398 LOW QUALITY PROTEIN: THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
E 118502527 THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 118509882 PCI domain-containing protein 2 homolog K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 118504866 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 118507184 enhancer of yellow 2 transcription factor-like K11368 ENY2; enhancer of yellow 2 transcription factor
D Nuclear pore complex
E 118507635 nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 118507171 mRNA export factor K14298 RAE1; mRNA export factor
E 118508291 protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 118506156 nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 118507164 nuclear pore complex protein Nup75 K14304 NUP85; nuclear pore complex protein Nup85
E 118503982 nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 118511737 nucleoporin NSP1 K14295 NUP50; nuclear pore complex protein Nup50
E 118510530 probable nucleoporin Nup54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 118508565 nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 118517523 nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 118508578 nuclear pore complex protein Nup93-1 K14309 NUP93; nuclear pore complex protein Nup93
E 118502833 nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 118505176 nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 118507998 nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 118509342 nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188
E 118506529 nuclear pore complex protein Nup153-like K14296 NUP153; nuclear pore complex protein Nup153
E 118508972 nuclear pore complex protein Nup153-like K14296 NUP153; nuclear pore complex protein Nup153
E 118513850 nuclear pore complex protein Nup154 K14312 NUP155; nuclear pore complex protein Nup155
E 118517721 nuclear pore complex protein Nup160 homolog K14303 NUP160; nuclear pore complex protein Nup160
E 118512472 nucleoporin Nup35 K14313 NUP35; nuclear pore complex protein Nup53
E 118513766 nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 118509491 nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 118508998 nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 118511708 nuclear pore complex protein Nup58 K14307 NUPL1; nucleoporin p58/p45
E 118511226 nucleoporin nup189-like K14321 NUPL2; nucleoporin-like protein 2
E 118507474 nucleoporin Ndc1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 118509878 nucleoporin seh1 K14299 SEH1; nucleoporin SEH1
E 118502351 E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 118503440 aladin K14320 AAAS; aladin
E 118502673 nuclear pore complex protein DDB_G0274915 K18721 NUP1; nucleoporin NUP1
E 118503874 nucleoporin Gle1 K18723 GLE1; nucleoporin GLE1
E 118504574 nuclear RNA export factor 1-like K14284 NXF; nuclear RNA export factor
E 118510914 NTF2-related export protein K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 118517015 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 118508923 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 118509725 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 118506640 protein elav isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118517673 ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118512655 ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118513881 FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 118512794 transitional endoplasmic reticulum ATPase TER94 K13525 VCP; transitional endoplasmic reticulum ATPase
E 118509051 exportin-1 K14290 XPO1; exportin-1
E 118504286 ran-binding protein 16 K18460 XPO7; exportin-7
E 118509949 ran GTPase-activating protein K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 118510271 eukaryotic translation initiation factor 4E1 K03259 EIF4E; translation initiation factor 4E
E 118504486 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 118513375 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E 118503506 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 118512368 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 118511620 eukaryotic translation initiation factor 4B-like isoform X1 K03258 EIF4B; translation initiation factor 4B
E 118505365 eukaryotic translation initiation factor 4H-like isoform X1 K24086 EIF4H; translation initiation factor 4H
E 118513978 eukaryotic translation initiation factor 4E-binding protein 3 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 118517464 uncharacterized protein LOC118517464 isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 118507273 protein angel homolog 2 K18729 ANGEL; protein angel
E 118512427 synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118511142 cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118510940 uncharacterized protein LOC118510940 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 118508440 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118506827 ATP-dependent RNA helicase bel isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118517179 GIGYF family protein CG11148-like K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118504673 GIGYF family protein CG11148-like K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118503732 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein
E 118504751 polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 118505252 uncharacterized protein LOC118505252 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 118508289 helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 118511900 deformed epidermal autoregulatory factor 1 isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 118502582 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence
E 118510313 density-regulated protein homolog K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 118513104 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 118502880 heterogeneous nuclear ribonucleoprotein 87F-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118506586 heterogeneous nuclear ribonucleoprotein 27C K14411 MSI; RNA-binding protein Musashi
E 118514267 RNA-binding protein Musashi homolog Rbp6 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 118505486 RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 118504765 HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 118511222 protein pelota K06965 PELO; protein pelota
E 118509762 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 118506774 DEAD-box helicase Dbp80 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 118507161 pre-mRNA-splicing factor syf1 homolog K12867 SYF1; pre-mRNA-splicing factor SYF1
E 118505833 SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 118502798 regulator of chromosome condensation isoform X1 K11493 RCC1; regulator of chromosome condensation
E 118517325 uncharacterized protein LOC118517325 K18733 LARP6; la-related protein 6
E 118509385 uncharacterized protein LOC118509385 K18733 LARP6; la-related protein 6
E 118506077 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 118516529 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 118511071 polymerase delta-interacting protein 3-like K22414 POLDIP3; polymerase delta-interacting protein 3
E 118513506 leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 118517708 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 118510865 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 118517557 LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118517361 regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 118509242 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 118511118 serine/threonine-protein phosphatase PP2A K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 118513249 serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 118503289 protein phosphatase PP2A 55 kDa regulatory subunit isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118506742 uncharacterized protein LOC118506742 isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118507278 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118502856 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118510839 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 118510413 serine/threonine-protein kinase Smg1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 118513668 LOW QUALITY PROTEIN: protein SMG5 K11125 SMG5; protein SMG5
E 118503759 telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 118511083 protein SMG8 K18734 SMG8; protein SMG8
E 118509717 protein SMG9-like K18735 SMG9; protein SMG9
E 118517179 GIGYF family protein CG11148-like K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118504673 GIGYF family protein CG11148-like K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118507764 selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 118506544 probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 118511948 GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 118502825 protein penguin K14844 PUF6; pumilio homology domain family member 6
E 118509626 unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 118511051 protein bicaudal D K18739 BICD; protein bicaudal D
E 118511540 uncharacterized protein LOC118511540 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 118505170 actin-5C K05692 ACTB_G1; actin beta/gamma 1
E 118503560 actin-1 K05692 ACTB_G1; actin beta/gamma 1
E 118509720 actin, muscle K05692 ACTB_G1; actin beta/gamma 1
E 118502962 actin-87E K05692 ACTB_G1; actin beta/gamma 1
E 118510267 uncharacterized protein LOC118510267 K04377 MYC; Myc proto-oncogene protein
E 118510359 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6
E 118510365 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 118510457 uncharacterized protein LOC118510457 K18741 NANOS1; protein nanos 1
E 118504248 maternal effect protein oskar K18742 OSK; maternal effect protein oskar
E 118503017 DNA-binding protein K10-like K02524 K10; DNA binding protein (fs(1)K10, female sterile(1)K10)
E 118508392 enhancer of split mbeta protein-like K09090 HESN; hairy and enhancer of split, invertebrate
E 118503599 transcription factor HES-1-like K09090 HESN; hairy and enhancer of split, invertebrate
E 118512968 protein hairy K09090 HESN; hairy and enhancer of split, invertebrate
D Trans-acting binding proteins
E 118507246 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 118504246 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 118512945 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 118503877 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 118511088 uncharacterized protein DDB_G0283357 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 118512198 double-stranded RNA-binding protein Staufen homolog K17597 STAU; double-stranded RNA-binding protein Staufen
E 118502699 polypyrimidine tract-binding protein 3 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 118510660 RNA-binding protein squid-like isoform X1 K03102 SQD; squid
E 118513099 RNA-binding protein squid-like K03102 SQD; squid
E 118508440 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 118512427 synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118511142 cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118511865 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118510739 CUGBP Elav-like family member 2 isoform X1 K02177 BRU; bruno
E 118509102 maternal protein exuperantia-like K18745 EXU; maternal protein exuperantia
E 118509103 maternal protein exuperantia-like K18745 EXU; maternal protein exuperantia
E 118510441 Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 118515307 sex-lethal homolog isoform X1 K18747 SXL; protein sex-lethal
E 118502558 sex-lethal homolog isoform X1 K18747 SXL; protein sex-lethal
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 118503183 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 118503481 protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118505941 protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118510271 eukaryotic translation initiation factor 4E1 K03259 EIF4E; translation initiation factor 4E
E 118504486 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 118517557 LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118506827 ATP-dependent RNA helicase bel isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118513283 ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118511556 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118514229 protein LSM14 homolog B K18749 LSM14; protein LSM14
E 118510441 Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 118507466 LIM domain-containing protein jub K16682 AJUBA; LIM domain-containing protein
E 118504838 putative helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 118510344 transportin-1 K18752 TNPO1; transportin-1
E 118510413 serine/threonine-protein kinase Smg1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 118513668 LOW QUALITY PROTEIN: protein SMG5 K11125 SMG5; protein SMG5
E 118503759 telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 118507197 protein TIS11-like isoform X1 K15308 TTP; tristetraprolin
E 118514402 protein lin-28 homolog K18754 LIN28; protein lin-28
E 118507533 huntingtin K04533 HD; huntingtin
E 118513459 protein bicaudal C K18756 BICC1; protein bicaudal C
E 118502880 heterogeneous nuclear ribonucleoprotein 87F-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118513824 LOW QUALITY PROTEIN: cAMP-dependent protein kinase catalytic subunit alpha-like K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118506497 cAMP-dependent protein kinase catalytic subunit 1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118511936 la-related protein 1 K18757 LARP1; la-related protein 1
E 118502802 ataxin-2 homolog isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 118506215 uncharacterized protein LOC118506215 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 118512543 mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 118505258 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 118511528 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 118505659 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118514599 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 118514410 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118509786 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 118513735 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 118508037 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 118510988 kinesin light chain K10407 KLC; kinesin light chain
E 118509626 unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 118506188 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 118506962 tubulin alpha-8 chain-like isoform X1 K07374 TUBA; tubulin alpha
E 118507948 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 118507949 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 118511372 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 118511382 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 118505310 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 118508440 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118510940 uncharacterized protein LOC118510940 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 118513993 protein Gawky-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118513994 protein Gawky-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118513997 protein Gawky-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118514506 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 118504297 regulator of gene activity K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 118514524 CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118503374 CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118507301 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118506128 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 118512738 PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 118511783 protein Tob1 K14443 TOB; protein Tob/BTG
E 118517464 uncharacterized protein LOC118517464 isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 118511629 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 118512994 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 118508522 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118509149 enhancer of mRNA-decapping protein 4 homolog isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 118517361 regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 118509242 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 118509648 protein wech K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 118506291 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 118502589 YTH domain-containing family protein-like K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 118508492 nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 118511968 nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 118503732 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein
E 118512198 double-stranded RNA-binding protein Staufen homolog K17597 STAU; double-stranded RNA-binding protein Staufen
E 118512427 synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118510538 ras GTPase-activating protein-binding protein 2-like K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 118507580 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 118504024 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 118513375 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E 118505419 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 118511620 eukaryotic translation initiation factor 4B-like isoform X1 K03258 EIF4B; translation initiation factor 4B
E 118503506 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 118512368 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 118506826 ribosomal protein S6 kinase 2 beta-like isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118511116 guanine nucleotide-binding protein subunit beta-like protein isoform X1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 118504574 nuclear RNA export factor 1-like K14284 NXF; nuclear RNA export factor
E 118511449 histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 118504042 ataxin-2 homolog K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 118512543 mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 118506215 uncharacterized protein LOC118506215 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 118513283 ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118508522 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118509149 enhancer of mRNA-decapping protein 4 homolog isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 118511629 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 118512994 protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 118505258 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 118511528 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 118505659 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118514599 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 118514410 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118509786 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 118513735 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 118508037 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 118503183 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 118502839 5'-3' exoribonuclease 2 homolog K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E 118503490 uncharacterized protein LOC118503490 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 118513792 exosome complex component CSL4-like K07573 CSL4; exosome complex component CSL4
E 118517116 exosome complex component CSL4-like K07573 CSL4; exosome complex component CSL4
E 118508201 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 118510999 exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 118503988 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 118504563 exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 118517298 exosome complex component MTR3-like K12587 MTR3; exosome complex component MTR3
E 118517307 exosome complex component MTR3-like K12587 MTR3; exosome complex component MTR3
E 118503198 exosome complex component MTR3-like K12587 MTR3; exosome complex component MTR3
E 118507929 exosome complex exonuclease RRP42 K12589 RRP42; exosome complex component RRP42
E 118503356 exosome complex component RRP43-like isoform X1 K12586 RRP43; exosome complex component RRP43
E 118502864 exosome complex component rrp45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 118509343 exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 118508447 exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 118516339 uncharacterized protein LOC118516339 K12592 C1D; exosome complex protein LRP1
E 118511364 uncharacterized protein LOC118511364 K12592 C1D; exosome complex protein LRP1
E 118506044 M-phase phosphoprotein 6-like K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 118516406 M-phase phosphoprotein 6-like K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 118505699 non-canonical poly(A) RNA polymerase protein Trf4-1-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 118505709 non-canonical poly(A) RNA polymerase protein Trf4-1-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 118513223 exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 118508289 helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 118502772 tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 118512097 WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 118503374 CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118514506 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 118504297 regulator of gene activity K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 118514524 CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118507301 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118503944 CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 118511587 CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 118506128 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 118512738 PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 118512955 poly(A)-specific ribonuclease PARN-like isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 118513205 ATP-dependent DNA/RNA helicase DHX36-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 118511783 protein Tob1 K14443 TOB; protein Tob/BTG
E 118509089 nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 118513326 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 118503490 uncharacterized protein LOC118503490 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 118503437 nuclear exosome regulator NRDE2 isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 118511560 protein Smaug K27396 SMG; protein Smaug
E 118517323 focadhesin-like K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 118506175 ribonuclease ZC3H12A isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 118510057 LOW QUALITY PROTEIN: ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 118512390 probable oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 118514018 enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118508124 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 118508866 ATP-dependent 6-phosphofructokinase isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 118507210 heat shock 70 kDa protein cognate 5 K04043 dnaK; molecular chaperone DnaK
E 118507015 heat shock protein 60A K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 118508201 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 118513792 exosome complex component CSL4-like K07573 CSL4; exosome complex component CSL4
E 118517116 exosome complex component CSL4-like K07573 CSL4; exosome complex component CSL4
D Cofactors
E 118503988 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 118507929 exosome complex exonuclease RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024