+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Bacillus subtilis subsp. subtilis 168
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E BSU15930 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E BSU14530 rnjA; ribonuclease J 1 K12574 rnj; ribonuclease J [EC:3.1.-.-]
E BSU16780 rnjB; ribonuclease J 2 K12574 rnj; ribonuclease J [EC:3.1.-.-]
E BSU16960 ymdA; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
E BSU33610 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E BSU09930 yhaM; 3'-5' exoribonuclease yhaM K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Helicases
E BSU39110 deaD; ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
E BSU04580 cshA; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
E BSU25140 cshB; DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:3.6.4.13]
E BSU19220 yocI; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E BSU23020 recQ; ATP-dependent DNA helicase RecS K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E BSU33900 eno; enolase K01689 ENO; enolase [EC:4.2.1.11]
E BSU16690 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E BSU37080 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
E BSU29190 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E BSU25470 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
E BSU06030 groEL; chaperonin K04077 groEL; chaperonin GroEL
E BSU17340 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Others
E BSU35370 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
E BSU34770 yvcJ; nucleotide-binding protein YvcJ K06958 rapZ; RNase adapter protein RapZ
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 7, 2022