+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Callorhinchus milii (elephant shark)</h2>
%<!-- w=600, -->
!
A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        103177668 polr2b; DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        103180526 polr2j; DNA-directed RNA polymerase II subunit RPB11-a	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        103172396 polr2d; DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        103172736 polr2g; DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Pol I, II, III common subunits
E        103189926 polr2e; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103189399 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103184435 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103180741 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        121851287 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        103186778 gtf2a1; transcription initiation factor IIA subunit 1 isoform X2	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        103187798 gtf2a2; transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        103174678 gtf2b; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        103178499 tbpl2; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103185145 tbpl1; TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103173200 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103189356 taf1; transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        103187840 taf2; transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        103187928 taf3; transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        103179743 LOW QUALITY PROTEIN: mucin-5AC	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103186261 transcription initiation factor TFIID subunit 4 isoform X2	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103188100 transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103179268 taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103191431 taf5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103171686 taf6; transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103182467 taf8; transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        103177871 taf9; transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        103181423 taf10; transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        103179060 taf11; transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        103179459 taf12; transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103188659 taf13; LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        103180615 taf15; TATA-binding protein-associated factor 2N	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        103178231 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        103188654 gtf2e1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        103177645 gtf2e2; transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        103177528 gtf2f2a; general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        103174834 gtf2h1; general transcription factor IIH subunit 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        103182693 gtf2h2; general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        103188004 gtf2h3; general transcription factor IIH subunit 3	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        121852719 gtf2h4; general transcription factor IIH subunit 4	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        103189811 ercc3; LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPB	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        103178896 gtf2h5; general transcription factor IIH subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        103177774 cdk7; cyclin-dependent kinase 7 isoform X1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        103185378 mnat1; CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        103182666 ccnh; cyclin-H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        103178587 med6; mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        103174615 med8; mediator of RNA polymerase II transcription subunit 8 isoform X1	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        103184244 med17; mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        103179455 med18; mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        103182471 med20; mediator of RNA polymerase II transcription subunit 20 isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        103184706 med22; mediator of RNA polymerase II transcription subunit 22 isoform X1	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        103175806 med28; mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        103179555 mediator of RNA polymerase II transcription subunit 30-like	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
E        103184957 mediator of RNA polymerase II transcription subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        103190522 med1; mediator of RNA polymerase II transcription subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        103181543 zgc:111976; mediator of RNA polymerase II transcription subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        103183662 med4; mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        103188218 med7; LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        103186825 med9; mediator of RNA polymerase II transcription subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        103183197 med10; mediator of RNA polymerase II transcription subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        103179882 med21; mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        103180582 med31; mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        103185116 med14; mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        103183978 med15; mediator of RNA polymerase II transcription subunit 15 isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        103188334 med16; mediator of RNA polymerase II transcription subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        103178958 cdk19; cyclin-dependent kinase 19 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        103183264 cdk8; cyclin-dependent kinase 8 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        103178300 ccnc; cyclin-C isoform X2	K15161 CCNC; cyclin-C 
E        103189375 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 12	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        103184467 mediator of RNA polymerase II transcription subunit 12-like protein isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        103180694 med13a; LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13a	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
E        103184376 mediator of RNA polymerase II transcription subunit 13-like	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        103182287 med23; LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        103189109 med24; mediator of RNA polymerase II transcription subunit 24	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        103191602 med25; mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        103183509 crsp7; mediator of RNA polymerase II transcription subunit 26	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        103184629 med27; mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        103181274 kat2b; histone acetyltransferase KAT2B	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        103189181 kat2a; histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        103178691 transformation/transcription domain-associated protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        103184987 supt3h; transcription initiation protein SPT3 homolog isoform X1	K11313 SUPT3H; transcription initiation protein SPT3 
E        103183329 tada2a; transcriptional adapter 2-alpha isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        103187164 tada2b; transcriptional adapter 2-beta	K15127 TADA2B; transcriptional adapter 2-beta 
E        103191499 tada3l; transcriptional adapter 3	K11315 TADA3; transcriptional adapter 3 
E        103180011 tada1; transcriptional adapter 1	K11317 TADA1; transcriptional adapter 1 
E        103187840 taf2; transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        103179743 LOW QUALITY PROTEIN: mucin-5AC	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103186261 transcription initiation factor TFIID subunit 4 isoform X2	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103188100 transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        103179268 taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103191431 taf5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        103171686 taf6; transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        103177871 taf9; transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        103181423 taf10; transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        103179459 taf12; transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        103183832 atxn7l3a; ataxin-7-like protein 3 isoform X1	K11363 SGF11; SAGA-associated factor 11 
E        103184748 sgf29; SAGA-associated factor 29	K11364 SGF29; SAGA-associated factor 29 
E        103189619 supt7l; LOW QUALITY PROTEIN: STAGA complex 65 subunit gamma	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        103179772 ataxin-7 isoform X1	K11318 ATXN7; ataxin-7 
E        103182530 ataxin-7-like protein 1 isoform X1	K11318 ATXN7; ataxin-7 
E        103178396 chd1; chromodomain-helicase-DNA-binding protein 1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        103184581 eny2; transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        103178679 usp22; ubiquitin carboxyl-terminal hydrolase 22 isoform X1	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        103186662 sf3b3; splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        103178096 smarca2; probable global transcription activator SNF2L2 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        103187553 smarca4a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        103190032 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        103190508 smarcc1a; SWI/SNF complex subunit SMARCC1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103172802 smarcc2; SWI/SNF complex subunit SMARCC2 isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        103190642 smarcd3b; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        103183838 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        103191473 smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        103189119 smarce1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        103175484 actg1; actin, cytoplasmic 2	K05692 ACTB_G1; actin beta/gamma 1 
E        103186865 actb; actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        103175868 actl6a; actin-like protein 6A	K11340 ACTL6A; actin-like protein 6A 
E        103179567 arid1ab; AT-rich interactive domain-containing protein 1A isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        103186452 arid1b; AT-rich interactive domain-containing protein 1B isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        103184680 arid2; AT-rich interactive domain-containing protein 2 isoform X1	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        103183908 AT-rich interactive domain-containing protein 2-like isoform X1	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        103188769 pbrm1; protein polybromo-1 isoform X1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        103190032 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        103180973 activated RNA polymerase II transcriptional coactivator p15	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        103185832 ccar1; cell division cycle and apoptosis regulator protein 1 isoform X1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
E        103189319 calcoco1a; calcium-binding and coiled-coil domain-containing protein 1	K25828 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        103172216 transcription elongation factor A protein 1 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        103186720 tcea1; transcription elongation factor A protein 1 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        103179526 tcea3; LOW QUALITY PROTEIN: transcription elongation factor A protein 3	K03145 TFIIS; transcription elongation factor S-II 
E        103180493 supt4h1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103190273 supt5h; transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103180663 supt6h; transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        103180205 ttf2; transcription termination factor 2 isoform X1	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        103184602 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        103183631 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        103187130 cpsf3; cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103186859 cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        103189617 ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103184322 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103190127 sympk; symplekin	K06100 SYMPK; symplekin 
E        103187466 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        103181691 xrn2; 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        103178737 dxo; decapping and exoribonuclease protein	K14845 RAI1; RAT1-interacting protein 
E        103191160 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103176310 regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        103187076 splicing factor, proline- and glutamine-rich	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        103186445 scaf8; SR-related and CTD-associated factor 8	K13191 RBM16; RNA-binding protein 16 
E        103185514 scaf4a; SR-related and CTD-associated factor 4	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        103184626 setx; LOW QUALITY PROTEIN: probable helicase senataxin	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        103172640 pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        103180053 cdc73; parafibromin	K15175 CDC73; parafibromin 
E        103190175 ctr9; LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        103186844 leo1; RNA polymerase-associated protein LEO1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        103172307 rtf1; RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        103183113 nelfa; negative elongation factor A	K15179 WHSC2; negative elongation factor A 
E        103180411 nelfb; negative elongation factor B isoform X1	K15180 COBRA1; negative elongation factor B 
E        103171615 nelfcd; negative elongation factor C/D	K15181 TH1L; negative elongation factor C/D 
D      Super elongation complex (SEC)
E        103187401 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        103178386 ell2; RNA polymerase II elongation factor ELL2 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        103182036 ell; RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        103180863 AF4/FMR2 family member 4 isoform X1	K15184 AFF1; AF4/FMR2 family member 1 
E        103177336 aff4; AF4/FMR2 family member 4 isoform X1	K15185 AFF4; AF4/FMR2 family member 4 
E        103176243 eaf1; LOW QUALITY PROTEIN: ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        103189021 eaf2; ELL-associated factor 2	K15186 EAF; ELL-associated factor 
E        103183484 protein ENL	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        103182852 mllt3; protein AF-9	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        103180382 ccnt2a; LOW QUALITY PROTEIN: cyclin-T2a	K15188 CCNT; cyclin T 
E        103171942 ccnt1; cyclin-T1	K15188 CCNT; cyclin T 
E        103184677 cdk9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        103187401 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        103178386 ell2; RNA polymerase II elongation factor ELL2 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        103182036 ell; RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        103183202 ice1; little elongation complex subunit 1	K26143 ICE1; little elongation complex subunit 1 
E        103187857 ice2; little elongation complex subunit 2 isoform X1	K26144 ICE2; little elongation complex subunit 2 
D      Brd4/P-TEFb complex
E        103189829 brd4; bromodomain-containing protein 4 isoform X1	K11722 BRD4; bromodomain-containing protein 4 
E        103180382 ccnt2a; LOW QUALITY PROTEIN: cyclin-T2a	K15188 CCNT; cyclin T 
E        103171942 ccnt1; cyclin-T1	K15188 CCNT; cyclin T 
E        103184677 cdk9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        103183766 protein HEXIM1-like	K15189 HEXIM1_2; protein HEXIM1/2 
E        103171835 7SK snRNA methylphosphate capping enzyme	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        103180899 larp7; la-related protein 7	K15191 LARP7; La-related protein 7 
E        103180382 ccnt2a; LOW QUALITY PROTEIN: cyclin-T2a	K15188 CCNT; cyclin T 
E        103171942 ccnt1; cyclin-T1	K15188 CCNT; cyclin T 
E        103184677 cdk9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
E        103174675 znf326; DBIRD complex subunit ZNF326	K13204 ZNF326; zinc finger protein 326 
D      Others
E        103180525 LOW QUALITY PROTEIN: general transcription factor II-I	K03121 TFII-I; transcription initiation factor TFII-I 
E        103180523 gtf2ird1; general transcription factor II-I repeat domain-containing protein 1 isoform X3	K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 
E        103180547 btaf1; TATA-binding protein-associated factor 172 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        103174653 dr1; protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        103173440 protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        103173066 drap1; dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        103174862 spty2d1; protein SPT2 homolog isoform X1	K15193 SPTY2D1; protein SPT2 
E        103178247 aff2; AF4/FMR2 family member 2 isoform X1	K15194 AFF2; AF4/FMR2 family member 2 
E        103183228 ctdp1; RNA polymerase II subunit A C-terminal domain phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        103190563 ctdspla; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103189801 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        103186897 protein IWS1 homolog isoform X1	K17498 SPN1; transcription factor SPN1 
E        103176377 csrnp3; cysteine/serine-rich nuclear protein 3	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        103189975 cysteine/serine-rich nuclear protein 2 isoform X1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        103176145 rpap1; RNA polymerase II-associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        103174664 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        103185166 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        103184774 rpap3; RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        103188501 ccnk; cyclin-K isoform X1	K23326 CCNK; cyclin K 
E        103179570 gpn2; GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        103184317 gpn3; GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        103181593 polr3a; DNA-directed RNA polymerase III subunit RPC1 isoform X1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        103179896 polr3b; DNA-directed RNA polymerase III subunit RPC2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        103181633 polr1c; DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103177281 polr1d; DNA-directed RNA polymerases I and III subunit RPAC2 isoform X1	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        103190716 polr3d; DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        103178714 polr3e; DNA-directed RNA polymerase III subunit RPC5	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        103179253 polr3f; DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        103178367 polr3g; DNA-directed RNA polymerase III subunit RPC7	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        103189231 polr3h; DNA-directed RNA polymerase III subunit RPC8 isoform X1	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        103180645 DNA-directed RNA polymerase III subunit RPC9	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        121850280 polr3k; DNA-directed RNA polymerase III subunit RPC10	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        103189926 polr2e; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103189399 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103184435 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103180741 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        121851287 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        103183255 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
E        103190347 zinc finger protein 660-like isoform X1	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        103178499 tbpl2; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103185145 tbpl1; TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103173200 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103190561 transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        103190794 transcription factor IIIB 50 kDa subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        103182713 transcription factor TFIIIB component B'' homolog	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        103188267 general transcription factor 3C polypeptide 1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        103185800 gtf3c2; general transcription factor 3C polypeptide 2	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        103176551 gtf3c3; general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        103184622 gtf3c4; general transcription factor 3C polypeptide 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        103184681 gtf3c5; general transcription factor 3C polypeptide 5 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        103173649 gtf3c6; general transcription factor 3C polypeptide 6	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        103184681 gtf3c5; general transcription factor 3C polypeptide 5 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        103176551 gtf3c3; general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        103185384 snapc1b; snRNA-activating protein complex subunit 1b	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        103177693 snapc3; snRNA-activating protein complex subunit 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        103186376 snapc5; snRNA-activating protein complex subunit 5	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        103180154 POU domain, class 2, transcription factor 1 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        103191053 pou2f3; POU domain, class 2, transcription factor 3 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        103183084 POU domain, class 5, transcription factor 3-like	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        103174931 znf143b; zinc finger protein 143	K20828 ZNF143_76; zinc finger protein 143/76 
E        103179056 zinc finger protein 76 isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        103188627 maf1a; repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
E        103179692 maf1; repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        103178931 polr1b; DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        103181633 polr1c; DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        103177281 polr1d; DNA-directed RNA polymerases I and III subunit RPAC2 isoform X1	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        103182156 polr1e; DNA-directed RNA polymerase I subunit RPA49 isoform X2	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        103182625 polr1f; DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
D      Pol I, II, III common subunits
E        103189926 polr2e; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        103189399 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        103184435 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        103180741 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        121851287 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        103178499 tbpl2; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103185145 tbpl1; TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103173200 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        103186141 taf1a; TATA box-binding protein-associated factor RNA polymerase I subunit A	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        103187124 taf1b; TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        103181005 taf1c; TATA box-binding protein-associated factor, RNA polymerase I, subunit C	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
C    Other transcription-related factors
D      UBF
E        103190095 ubtfl; upstream binding transcription factor, like isoform X1	K09273 UBTF; upstream-binding transcription factor 
E        103183830 ubtf; nucleolar transcription factor 1 isoform X1	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        103178782 rrn3; RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        103180493 supt4h1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103190273 supt5h; transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        103180602 smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        103189565 bromodomain adjacent to zinc finger domain protein 2A isoform X1	K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A 
D      CTDK-I complex
D      Transcription termination factors
E        103184624 transcription termination factor 1	K15225 TTF1; transcription termination factor 1 
E        103189174 cavin1; caveolae-associated protein 1	K19387 CAVIN1; caveolae-associated protein 1 
D      Others
E        103181592 nolc1; nucleolar and coiled-body phosphoprotein 1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        103174678 gtf2b; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        103178231 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        103188654 gtf2e1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
#[ <a href="/kegg/brite.html">BRITE</a> | <a href="/kegg/kegg2.html">KEGG2</a> | <a href="/kegg/">KEGG</a> ]<br>
#Last updated: April 9, 2024