+C RNA KO
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Non-coding RNAs - Escherichia coli O9 HS (commensal)
%
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ATransfer RNA
B EcHS_A4679 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B EcHS_A4680 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B EcHS_A4642 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B EcHS_A4715 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B EcHS_A4703 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
B EcHS_A4647 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B EcHS_A4710 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B EcHS_A4678 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B EcHS_A4688 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B EcHS_A4689 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B EcHS_A4691 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B EcHS_A4690 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
B EcHS_A4673 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B EcHS_A4675 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B EcHS_A4674 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B EcHS_A4676 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
B EcHS_A4643 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
B EcHS_A4708 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
B EcHS_A4644 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
B EcHS_A4670 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
B EcHS_A4648 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
B EcHS_A4649 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
B EcHS_A4651 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
B EcHS_A4652 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
B EcHS_A4686 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B EcHS_A4716 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B EcHS_A4707 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B EcHS_A4721 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
B EcHS_A4719 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B EcHS_A4697 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B EcHS_A4671 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B EcHS_A4724 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B EcHS_A4725 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B EcHS_A4723 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
B EcHS_A4711 tRNA-His K14226 tRNA-His; tRNA His
B EcHS_A4641 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
B EcHS_A4704 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
B EcHS_A4714 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
B EcHS_A4701 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4726 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4653 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4712 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4727 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4729 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4728 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4669 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
B EcHS_A4655 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B EcHS_A4660 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B EcHS_A4684 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B EcHS_A4657 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B EcHS_A4661 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B EcHS_A4659 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
B EcHS_A4650 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4654 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4693 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4694 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4695 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4696 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4700 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4699 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4687 tRNA-Met K14230 tRNA-Met; tRNA Met
B EcHS_A4698 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
B EcHS_A4722 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
B EcHS_A4705 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
B EcHS_A4677 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
B EcHS_A4713 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
B EcHS_A4692 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B EcHS_A4672 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B EcHS_A4663 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B EcHS_A4662 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B EcHS_A4664 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
B EcHS_A4720 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B EcHS_A4702 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B EcHS_A4717 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B EcHS_A4645 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
B EcHS_A4709 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
B EcHS_A4665 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
B EcHS_A4666 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
B EcHS_A4718 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
B EcHS_A4656 tRNA-Val K14237 tRNA-Val; tRNA Val
B EcHS_A4683 tRNA-Val K14237 tRNA-Val; tRNA Val
B EcHS_A4682 tRNA-Val K14237 tRNA-Val; tRNA Val
B EcHS_A4658 tRNA-Val K14237 tRNA-Val; tRNA Val
B EcHS_A4681 tRNA-Val K14237 tRNA-Val; tRNA Val
B EcHS_A4667 tRNA-Val K14237 tRNA-Val; tRNA Val
B EcHS_A4668 tRNA-Val K14237 tRNA-Val; tRNA Val
B EcHS_A4706 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
#
ARibosomal RNA
B Prokaryotic rRNA
C EcHS_A4763 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C EcHS_A4789 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C EcHS_A4793 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C EcHS_A4732 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C EcHS_A4785 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C EcHS_A4805 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C EcHS_A4800 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C EcHS_A4794 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C EcHS_A4790 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C EcHS_A4801 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C EcHS_A4762 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C EcHS_A4806 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C EcHS_A4784 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C EcHS_A4733 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C EcHS_A4783 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C EcHS_A4791 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C EcHS_A4807 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C EcHS_A4734 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C EcHS_A4802 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C EcHS_A4761 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C EcHS_A4795 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C EcHS_A4782 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
B Eukaryotic rRNA
#
ASmall non-coding RNA
B Micro RNA
B Small nuclear RNA
B Small nucleolar RNA
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ALong-non-coding RNA
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AOther RNA
B Signal recognition particle
C EcHS_A4735 srpB; bacterial signal recognition particle RNA K01983 ffs; SRP RNA
B Ribonuclease P
C EcHS_A4778 RNase P K01978 rnpB; M1 RNA
B Antisense regulators
C EcHS_A4752 QUAD RNA K18864 sibA; sRNA antisense regulator of IbsA protein
C EcHS_A4753 QUAD RNA K18865 sibB; sRNA antisense regulator of IbsB protein
C EcHS_A4772 QUAD RNA K18867 sibC; sRNA antisense regulator of IbsC protein
C EcHS_A4775 QUAD RNA K18868 sibD; sRNA antisense regulator of IbsD protein
C EcHS_A4776 QUAD RNA K18869 sibE; sRNA antisense regulator of IbsE protein
B Unclassified
C EcHS_A4764 ssrA; ssrA K15035 ssrA; transfer-messenger RNA
C EcHS_A4751 DsrA RNA K18502 dsrA; small regulatory RNA DsrA
C EcHS_A4736 sroB; sroB RNA K18503 chiX; small regulatory RNA ChiX
C EcHS_A4781 SraH RNA K18504 arcZ; small regulatory RNA ArcZ
C EcHS_A4760 tke1 RNA K15841 glmY; small regulatory RNA GlmY
C EcHS_A4792 SraJ RNA K18505 glmZ; small regulatory RNA GlmZ
C EcHS_A4787 RyhB RNA K18507 ryhB; small regulatory RNA RyhB
C EcHS_A4738 rybB; rybB RNA K18508 rybB; small regulatory RNA RybB
C EcHS_A4766 sraD; sraD RNA K18511 micA; small regulatory RNA MicA
C EcHS_A4744 IS063 RNA K18512 micC; small regulatory RNA MicC
C EcHS_A4756 micF; micF RNA K18513 micF; small regulatory RNA MicF
C EcHS_A4767 CsrB/RsmB RNA family K18515 csrB; small regulatory RNA CsrB
C EcHS_A4797 CsrC RNA family K18516 csrC; small regulatory RNA CsrC
C EcHS_A4746 rprA; rprA RNA K18518 rprA; small regulatory RNA RprA
C EcHS_A4754 RyeE RNA K18520 cyaR; small regulatory RNA CyaR
C EcHS_A4768 gcvB; gcvB RNA K18521 gcvB; small regulatory RNA GcvB
C EcHS_A4769 sraE/rygA/rygB family RNA K18522 omrA; small regulatory RNA OmrA
C EcHS_A4770 sraE/rygA/rygB family RNA K18523 omrB; small regulatory RNA OmrB
C EcHS_A4788 IS183 RNA K18525 gadY; small regulatory RNA GadY
C EcHS_A4796 spf; Spot 42 RNA K18527 spf; small regulatory RNA Spot 42
C EcHS_A4798 oxyS; oxyS RNA K18528 oxyS; small regulatory RNA OxyS
C EcHS_A4742 IS061 RNA K21091 mcaS; small regulatory RNA McaS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: December 2, 2022