+E Transcription factors KO #

  Transcription Factors - Erwinia pyrifoliae DSM 12163

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D EPYR_01599 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D EPYR_03257 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C TCP C DMRT C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D EPYR_02004 araC; Arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D EPYR_03535 soxS; HTH-type transcriptional regulator soxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D EPYR_01939 rob; Regulatory protein pocR K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D EPYR_00722 rob; Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator C LysR family D EPYR_03089 gcvA; Carbapenem-hydrolyzing beta-lactamase transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D EPYR_02801 trpI; Carbapenem-hydrolyzing beta-lactamase transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D EPYR_00184 ilvY; LysR-family transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D EPYR_00227 metR; HTH-type transcriptional regulator metR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D EPYR_00170 oxyR; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D EPYR_03193 iciA; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D EPYR_01810 cysB; HTH-type transcriptional regulator cysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D EPYR_01568 cbl; HTH-type transcriptional regulator cysB K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D EPYR_03353 ampR; HTH-type transcriptional activator ampR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D EPYR_02718 yhcS; Uncharacterized HTH-type transcriptional regulator yhjC K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D EPYR_01567 nac; probable RuBisCO transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D EPYR_00176 yifA; probable RuBisCO transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D EPYR_03702 glpR; repressor of the glp operon K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D EPYR_00607 srlR; repressor of srl operon K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor C LacI family D EPYR_00018 rbsR; HTH-type ribose operon repressor rbsR K02529 lacI; LacI family transcriptional regulator D EPYR_00631 rbsR; HTH-type transcriptional repressor purR K02529 lacI; LacI family transcriptional regulator D EPYR_03158 galR; HTH-type transcriptional repressor purR K02529 lacI; LacI family transcriptional regulator D EPYR_03936 ptxS; HTH-type transcriptional repressor purR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D EPYR_00145 cytR; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D EPYR_00775 fruR; HTH-type transcriptional repressor fruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D EPYR_02119 scrR; HTH-type transcriptional repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D EPYR_03365 ascG; HTH-type transcriptional repressor purR K03487 ascG; LacI family transcriptional regulator, asc operon repressor D EPYR_02042 purR; HTH-type transcriptional repressor purR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D EPYR_03723 gntR; HTH-type transcriptional repressor gntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D EPYR_02545 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D EPYR_01742 fadR; fatty acid metabolism regulatory protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D EPYR_00833 pdhR; Glc operon transcriptional activator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D EPYR_01294 probable rhizopine catabolism regulatory protein mocR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D EPYR_01326 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D EPYR_02020 betI; HTH-type transcriptional regulator betI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D EPYR_02814 acrR; HTH-type transcriptional regulator acrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D EPYR_00078 ttk; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator D EPYR_02389 ycdC; HTH-type transcriptional regulator rutR K09017 rutR; TetR/AcrR family transcriptional regulator D EPYR_02036 ydhM; Uncharacterized HTH-type transcriptional regulator ydhM K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D EPYR_00172 yijC; HTH-type transcriptional repressor fabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D EPYR_00002 asnC; Regulatory protein asnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D EPYR_02469 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D EPYR_03362 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D EPYR_01537 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D EPYR_02829 ybaO; Leucine-responsive regulatory protein K05800 ybaO; Lrp/AsnC family transcriptional regulator C LuxR family D EPYR_02386 sdiA; DNA-binding transcriptional activator SdiA K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D EPYR_02283 rcsA; Colanic acid capsular biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor C MarR family D EPYR_02030 slyA; Transcriptional regulator slyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D EPYR_02365 marR; Transcriptional regulator slyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D EPYR_00961 emrR; Transcriptional repressor mprA (Protein emrR) K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D EPYR_03889 ohrR; HTH-type transcriptional regulator sarZ K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D EPYR_02781 ybbI; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D EPYR_03607 zntR; HTH-type transcriptional regulator hmrR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D EPYR_03534 soxR; Redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D EPYR_02553 yehV; HTH-type transcriptional regulator mlrA K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes C Fur family D EPYR_02663 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D EPYR_03576 yjbK; Peroxide operon regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D EPYR_03659 crp; Catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D EPYR_01923 fnr; Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D EPYR_01090 iscR; HTH-type transcriptional regulator iscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D EPYR_00528 yjeB; putative negative regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D EPYR_01940 HTH-type transcriptional regulator iscR K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB C ArsR family C XRE family D EPYR_02254 ydcN; Uncharacterized HTH-type transcriptional regulator ydcN K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C Other families D EPYR_02522 mntR; Transcriptional regulator mntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D EPYR_00249 birA; biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D EPYR_00287 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D EPYR_00716 trpR; trpR K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D EPYR_00356 nlp; Sugar fermentation stimulation protein B K07724 ner; Ner family transcriptional regulator D EPYR_00431 nlp; Sugar fermentation stimulation protein B K07724 ner; Ner family transcriptional regulator D EPYR_00766 yabN; Uncharacterized protein yabN K11925 sgrR; SgrR family transcriptional regulator D EPYR_00703 nadR; probable nadAB transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D EPYR_01879 dicA; HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D EPYR_03997 ygjM; Uncharacterized HTH-type transcriptional regulator ygjM K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D EPYR_01539 acoR; Signal-transduction and transcriptional-control protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D EPYR_02609 modE; Transcriptional regulator modE K02019 modE; molybdate transport system regulatory protein D EPYR_03909 yiaG; Uncharacterized HTH-type transcriptional regulator yiaG K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D EPYR_00158 metJ; Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D EPYR_01617 putA; proline dehydrogenase, P5C dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D EPYR_03420 relB; Antitoxin RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB D EPYR_03435 relB; Antitoxin RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D EPYR_02844 bolA; Protein bolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D EPYR_00239 rfaH; Transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D EPYR_00316 argR; argR K03402 argR; transcriptional regulator of arginine metabolism D EPYR_02670 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D EPYR_01991 mlc; Xylose repressor K15545 mlc; transcriptional regulator of PTS gene D EPYR_03916 mtlR; Mannitol operon repressor K02562 mtlR; mannitol operon repressor D EPYR_01840 tyrR; Transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D EPYR_01163 gcvR; Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D EPYR_01833 pspF; psp operon transcriptional activator PspF K03974 pspF; psp operon transcriptional activator D EPYR_01836 pspC; Phage shock protein C K03973 pspC; phage shock protein C D EPYR_03221 yqgE; UPF0301 protein ECA3925 K07735 algH; putative transcriptional regulator D EPYR_00894 dksA; RNA polymerase-binding protein DksA K06204 dksA; DnaK suppressor protein D EPYR_02873 ybaD; Transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR D EPYR_02954 crl; Sigma factor-binding protein crl K11926 crl; sigma factor-binding protein Crl D EPYR_01880 Repressor protein of division inhibition gene dicB K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D EPYR_00777 yabB; Protein mraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: January 19, 2023 #
Classification taken and modified from TRANSFAC 7.0