+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Mannheimia haemolytica USMARC_2286

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D N220_08850 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D N220_09980 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C N220_08845 GTPase Era K03595 era; GTPase C N220_12825 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C N220_10655 dksA; transcriptional regulator K06204 dksA; DnaK suppressor protein C N220_06410 nusA; peptidase M54 K02600 nusA; transcription termination/antitermination protein NusA C N220_10470 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C N220_13200 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D N220_04135 16S rRNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D N220_04450 ksgA; 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D N220_00340 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D N220_11940 MFS transporter K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D N220_10885 16S rRNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D N220_09460 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D N220_00015 gidB; 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D N220_11635 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D N220_11535 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D N220_01305 methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D N220_02260 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D N220_08000 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D N220_13680 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D N220_04185 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D N220_02390 rlmL; 23S rRNA methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D N220_06770 23S rRNA methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D N220_02705 50S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D N220_04145 23S rRNA (uracil-5-)methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D N220_03920 rumB; 23S rRNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D N220_04175 23S rRNA/tRNA pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D N220_09295 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D N220_03420 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D N220_12550 23S rRNA pseudouridylate synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D N220_04060 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D N220_02530 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D N220_11030 rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C N220_11950 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C N220_01235 rimM; 16S rRNA-processing protein M K02860 rimM; 16S rRNA processing protein RimM C N220_13090 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C N220_08700 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C N220_13490 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C N220_04570 50S ribosomal protein L30 K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C N220_01265 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C N220_08850 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C N220_11590 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C N220_05465 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C N220_09470 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C N220_06445 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13] C N220_01945 RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:3.6.4.13] B GTPases C N220_08845 GTPase Era K03595 era; GTPase C N220_11425 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C N220_04470 GTP-binding protein Der K03977 engA; GTPase C N220_12825 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] C N220_12475 GTPase HflX K03665 hflX; GTPase B Other maturation factors C N220_11160 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C N220_02065 guanosine-3' K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C N220_06420 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C N220_06405 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP C N220_13685 hypothetical protein K09710 ybeB; ribosome-associated protein C N220_06675 metal-binding heat shock protein K07042 ybeY; probable rRNA maturation factor C N220_08510 RNA-binding protein K07574 yhbY; RNA-binding protein C N220_07740 hypothetical protein K09889 yjgA; ribosome-associated protein C N220_04070 ribosome-associated inhibitor A K05809 raiA; ribosome-associated inhibitor A C N220_02300 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C N220_01915 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 4, 2022