+F Repair protein KO
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DNA Repair and Recombination Proteins - Oryctolagus cuniculus (rabbit)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 100344525 methylated-DNA--protein-cysteine methyltransferase isoform X2 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D 100338111 DNA oxidative demethylase ALKBH2 isoform X2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 100342939 alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 K10860 ALKBH3; mRNA N1-methyladenine demethylase [EC:1.14.11.54]
D 100339241 activating signal cointegrator 1 complex subunit 3 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
C BER (base exicision repair)
D DNA glycosylases
E 100338366 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 100346974 cyclin-O K10861 UDG2; uracil-DNA glycosylase 2 [EC:3.2.2.-]
E 100355930 G/T mismatch-specific thymine DNA glycosylase K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E 100357369 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 100352573 single-strand selective monofunctional uracil DNA glycosylase isoform X1 K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E 100344165 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 100339392 methyl-CpG-binding domain protein 4 isoform X2 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 103345505 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 127487221 N-glycosylase/DNA lyase isoform X1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 127487816 endonuclease 8-like 1 isoform X1 K10567 NEIL1; endonuclease VIII-like 1 [EC:3.2.2.- 4.2.99.18]
E 100358670 endonuclease 8-like 2 K10568 NEIL2; endonuclease VIII-like 2 [EC:3.2.2.- 4.2.99.18]
E 100338717 endonuclease 8-like 3 isoform X1 K10569 NEIL3; endonuclease VIII-like 3 [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 100348924 DNA-(apurinic or apyrimidinic site) endonuclease K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E 100350593 DNA-(apurinic or apyrimidinic site) endonuclease 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 100358263 DNA polymerase delta subunit 2 K02328 POLD2; DNA polymerase delta subunit 2
F 100357626 DNA polymerase delta subunit 3 isoform X2 K03504 POLD3; DNA polymerase delta subunit 3
F 100356010 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 100338950 DNA polymerase epsilon catalytic subunit A isoform X1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 100345613 DNA polymerase epsilon subunit 2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 100355895 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F 100358589 DNA polymerase epsilon subunit 4 K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E 100339381 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 100352966 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 100340979 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 100348691 DNA polymerase beta isoform X1 K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
E 100350130 DNA repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
E 100344941 DNA ligase 3 isoform X1 K10776 LIG3; DNA ligase 3 [EC:6.5.1.1]
D Other BER factors
E 100349532 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 103348750 LOW QUALITY PROTEIN: aprataxin-like K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 100351115 aprataxin isoform X2 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 100342776 aprataxin and PNK-like factor isoform X1 K13295 APLF; aprataxin and PNK-like factor [EC:3.1.-.-]
E 127489856 LOW QUALITY PROTEIN: bifunctional polynucleotide phosphatase/kinase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 100328641 HMGB1; high mobility group protein B1 K10802 HMGB1; high mobility group protein B1
E 100358889 high mobility group protein B1 K10802 HMGB1; high mobility group protein B1
E 100359149 high mobility group protein B1 K10802 HMGB1; high mobility group protein B1
E 100342308 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100343946 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100353094 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100356237 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100351030 DNA polymerase lambda isoform X3 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 100347336 poly [ADP-ribose] polymerase 1 isoform X1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 100351185 poly [ADP-ribose] polymerase 2 isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 100346107 protein mono-ADP-ribosyltransferase PARP4 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 100344824 protein mono-ADP-ribosyltransferase PARP3 isoform X2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 100346279 DNA repair protein complementing XP-C cells isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 100353489 UV excision repair protein RAD23 homolog B K10839 RAD23; UV excision repair protein RAD23
F 108178685 UV excision repair protein RAD23 homolog B K10839 RAD23; UV excision repair protein RAD23
F 100350600 centrin-2 K10840 CETN2; centrin-2
F 100358272 LOW QUALITY PROTEIN: centrin-2-like K10840 CETN2; centrin-2
E Cul4-DDB2 complex
F 103352470 E3 ubiquitin-protein ligase RBX1 isoform X1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 100354247 cullin-4A K10609 CUL4; cullin 4
F 100351102 cullin-4B isoform X3 K10609 CUL4; cullin 4
F 100354475 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 100352386 DNA damage-binding protein 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 100344349 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 100348087 DNA-directed RNA polymerase II subunit RPB2 isoform X1 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 100346702 DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 100358254 DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 100343199 DNA-directed RNA polymerase II subunit RPB4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 100354248 DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 100347609 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 100347834 DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 100349199 DNA-directed RNA polymerase II subunit RPB9 isoform X2 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 100345985 DNA-directed RNA polymerase II subunit RPB9-like K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 127486107 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 100358757 DNA-directed RNA polymerase II subunit RPB11-a K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 108176524 DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 108176876 DNA-directed RNA polymerases I, II, and III subunit RPABC4-like K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 103352470 E3 ubiquitin-protein ligase RBX1 isoform X1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 100354247 cullin-4A K10609 CUL4; cullin 4
F 100351102 cullin-4B isoform X3 K10609 CUL4; cullin 4
F 100354475 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 100352258 DNA excision repair protein ERCC-8 isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 100345784 DNA excision repair protein ERCC-6 isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 127489048 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 100348395 general transcription and DNA repair factor IIH helicase subunit XPB K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 100342919 general transcription factor IIH subunit 1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 100338745 general transcription factor IIH subunit 2-like protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 100347110 general transcription factor IIH subunit 3 isoform X2 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 127493056 general transcription factor IIH subunit 4 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 103349943 general transcription factor IIH subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 100358882 cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 100358948 cyclin-H K06634 CCNH; cyclin H
E 100349698 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 100341460 replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E 100347550 replication protein A 32 kDa subunit isoform X1 K10739 RFA2; replication factor A2
E 100358262 replication protein A 14 kDa subunit isoform X2 K10740 RPA3; replication factor A3
E 103351965 LOW QUALITY PROTEIN: replication protein A 30 kDa subunit K10741 RPA4; replication factor A4
D Other NER factors
E 108178030 DNA repair protein complementing XP-A cells K10847 XPA; DNA-repair protein complementing XP-A cells
E 100350642 DNA repair endonuclease XPF K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 108175387 DNA excision repair protein ERCC-5 K10846 ERCC5; DNA excision repair protein ERCC-5
E 100340979 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 100347339 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 100338738 cullin-3 isoform X1 K03869 CUL3; cullin 3
E 100009207 CUL5; cullin-5 K10612 CUL5; cullin 5
E 100341083 ELOC; elongin-C K03872 ELOC; elongin-C
E 100355441 elongin-C-like K03872 ELOC; elongin-C
E 100337922 elongin-C-like K03872 ELOC; elongin-C
E 100340879 ELOB; elongin-B K03873 ELOB; elongin-B
E 100357661 ELOA; elongin-A isoform X1 K15076 ELOA; elongin-A
E 100339926 elongin-A K15076 ELOA; elongin-A
E 127489451 elongin-A-like K15076 ELOA; elongin-A
E 100344449 ubiquitin-associated protein 2 isoform X1 K26545 UBAP2; ubiquitin-associated protein 2
E 100348242 ubiquitin-associated protein 2-like isoform X1 K26545 UBAP2; ubiquitin-associated protein 2
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 103347805 DNA mismatch repair protein Msh2 K08735 MSH2; DNA mismatch repair protein MSH2
E 100337807 DNA mismatch repair protein Msh3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 100351645 DNA mismatch repair protein Msh6 isoform X1 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 100342037 PMS1 protein homolog 1 isoform X1 K10864 PMS1; DNA mismatch repair protein PMS1
E 100337912 DNA mismatch repair protein Mlh1 isoform X2 K08734 MLH1; DNA mismatch repair protein MLH1
E 100355997 mismatch repair endonuclease PMS2 isoform X3 K10858 PMS2; DNA mismatch repair protein PMS2
E 100339094 DNA mismatch repair protein Mlh3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 100358263 DNA polymerase delta subunit 2 K02328 POLD2; DNA polymerase delta subunit 2
E 100357626 DNA polymerase delta subunit 3 isoform X2 K03504 POLD3; DNA polymerase delta subunit 3
E 100356010 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 100341460 replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E 100347550 replication protein A 32 kDa subunit isoform X1 K10739 RFA2; replication factor A2
E 100358262 replication protein A 14 kDa subunit isoform X2 K10740 RPA3; replication factor A3
E 103351965 LOW QUALITY PROTEIN: replication protein A 30 kDa subunit K10741 RPA4; replication factor A4
D RFC (replication factor C)
E 100352565 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 100343517 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 100342140 replication factor C subunit 4 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
E 100339186 replication factor C subunit 3 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
E 100345366 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 100339381 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 100338764 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 100328641 HMGB1; high mobility group protein B1 K10802 HMGB1; high mobility group protein B1
E 100358889 high mobility group protein B1 K10802 HMGB1; high mobility group protein B1
E 100359149 high mobility group protein B1 K10802 HMGB1; high mobility group protein B1
E 100342308 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100343946 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100353094 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100356237 high mobility group protein B1-like K10802 HMGB1; high mobility group protein B1
E 100340979 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 100328690 WDR76; WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 100356946 MRE11; double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 100328725 RAD50; DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 100352398 nibrin isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 100347269 breast cancer type 1 susceptibility protein isoform X2 K10605 BRCA1; breast cancer type 1 susceptibility protein [EC:2.3.2.27]
E 100340914 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 100347269 breast cancer type 1 susceptibility protein isoform X2 K10605 BRCA1; breast cancer type 1 susceptibility protein [EC:2.3.2.27]
E 100350582 ABRAXAS1; BRCA1-A complex subunit Abraxas 1 isoform X2 K20774 FAM175A; BRCA1-A complex subunit Abraxas
E 100354766 BRCA1-A complex subunit RAP80 isoform X2 K20775 UIMC1; BRCA1-A complex subunit RAP80
E 100347469 BABAM2; BRISC and BRCA1-A complex member 2 isoform X2 K12173 BRE; BRCA1-A complex subunit BRE
E 100339276 lys-63-specific deubiquitinase BRCC36 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 100347269 breast cancer type 1 susceptibility protein isoform X2 K10605 BRCA1; breast cancer type 1 susceptibility protein [EC:2.3.2.27]
E 100359326 LOW QUALITY PROTEIN: Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 100349197 DNA topoisomerase 2-binding protein 1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 100347269 breast cancer type 1 susceptibility protein isoform X2 K10605 BRCA1; breast cancer type 1 susceptibility protein [EC:2.3.2.27]
E 100353053 LOW QUALITY PROTEIN: DNA endonuclease RBBP8-like K20773 RBBP8; DNA endonuclease RBBP8 [EC:3.1.-.-]
E 100354690 DNA endonuclease RBBP8 isoform X4 K20773 RBBP8; DNA endonuclease RBBP8 [EC:3.1.-.-]
E 100356946 MRE11; double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 100328725 RAD50; DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 100352398 nibrin isoform X1 K10867 NBN; nibrin
D BRCA complex
E 100347269 breast cancer type 1 susceptibility protein isoform X2 K10605 BRCA1; breast cancer type 1 susceptibility protein [EC:2.3.2.27]
E 100355331 breast cancer type 2 susceptibility protein isoform X2 K08775 BRCA2; breast cancer 2 susceptibility protein
E 100356031 partner and localizer of BRCA2 isoform X1 K10897 PALB2; partner and localizer of BRCA2
E 100008661 RAD51; DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 100008661 RAD51; DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
E 100351948 DNA repair protein RAD51 homolog 2 isoform X8 K10869 RAD51L1; RAD51-like protein 1
E 100339674 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 100357424 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 100342809 DNA repair protein XRCC2 K10879 XRCC2; DNA-repair protein XRCC2
E 100354479 DNA repair protein XRCC3 K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 100350648 DNA repair protein RAD52 homolog isoform X1 K10873 RAD52; DNA repair and recombination protein RAD52
E 100342481 RAD52 motif-containing protein 1 isoform X4 K10874 RDM1; RAD52 motif-containing protein 1
D Rad54 family proteins
E 100340671 DNA repair and recombination protein RAD54-like isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 100343308 helicase ARIP4 isoform X1 K10876 RAD54L2; RAD54-like protein 2 [EC:5.6.2.-]
E 100354266 DNA repair and recombination protein RAD54B isoform X1 K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E 100341857 ATP-dependent DNA helicase Q1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 100341925 bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN isoform X4 K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 100345123 recQ-like DNA helicase BLM isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100341996 ATP-dependent DNA helicase Q5 isoform X1 K10902 RECQL5; ATP-dependent DNA helicase Q5 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 100345123 recQ-like DNA helicase BLM isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100345272 DNA topoisomerase 3-beta-1 isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 100352297 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 100348643 recQ-mediated genome instability protein 2 isoform X1 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 100341460 replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E 100347550 replication protein A 32 kDa subunit isoform X1 K10739 RFA2; replication factor A2
E 100358262 replication protein A 14 kDa subunit isoform X2 K10740 RPA3; replication factor A3
E 103351965 LOW QUALITY PROTEIN: replication protein A 30 kDa subunit K10741 RPA4; replication factor A4
D Protein phosphatase 4
E 100009163 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 100354033 serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X2 K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E 100352584 serine/threonine-protein phosphatase 4 regulatory subunit 2 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 103348624 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 4 regulatory subunit 2-like K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 100345999 serine/threonine-protein phosphatase 4 regulatory subunit 3B isoform X3 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 100347843 serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform X2 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 100357964 serine/threonine-protein phosphatase 4 regulatory subunit 4 K15426 PPP4R4; serine/threonine-protein phosphatase 4 regulatory subunit 4
D AP-5 complex
E 100341073 AP-5 complex subunit beta-1 K19022 AP5B1; AP-5 complex subunit beta-1
E 100358901 AP-5 complex subunit mu-1 isoform X3 K19023 AP5M1; AP-5 complex subunit mu-1
E 100347137 AP-5 complex subunit sigma-1 isoform X2 K19024 AP5S1; AP-5 complex subunit sigma-1
E 100353386 AP-5 complex subunit zeta-1 isoform X1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 100358575 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 100354764 structural maintenance of chromosomes protein 6 isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 100340991 LRATD1; protein LRATD1 K22805 FAM84A; protein FAM84A
E 100359125 non-structural maintenance of chromosomes element 1 homolog isoform X2 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 100356538 E3 SUMO-protein ligase NSE2 isoform X2 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 100345871 non-structural maintenance of chromosomes element 3 homolog K22823 NSMCE3; non-structural maintenance of chromosomes element 3
E 100356831 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 100342888 SMC5-SMC6 complex localization factor protein 1 isoform X1 K26126 SLF1; SMC5-SMC6 complex localization factor protein 1
E 100348341 SMC5-SMC6 complex localization factor protein 2 isoform X1 K26127 SLF2; SMC5-SMC6 complex localization factor protein 2
D Other HR factors
E 100341377 crossover junction endonuclease EME1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 100348519 exonuclease 3'-5' domain-containing protein 2 isoform X1 K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E 100341582 LOW QUALITY PROTEIN: crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 127482699 crossover junction endonuclease MUS81 isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 108178368 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 108176933 26S proteasome complex subunit SEM1-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 100352466 DNA repair protein SWI5 homolog K10991 SWI5; DNA repair protein Swi5/Sae3
E 100339586 swi5-dependent recombination DNA repair protein 1 homolog isoform X1 K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E 103348603 structure-specific endonuclease subunit SLX1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 100347540 structure-specific endonuclease subunit SLX4 isoform X1 K10484 BTBD12; structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
E 100355273 flap endonuclease GEN homolog 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 100357157 spatacsin K19026 SPG11; spatacsin
E 100353465 zinc finger FYVE domain-containing protein 26 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 100343305 RAD51-associated protein 1 isoform X1 K20778 RAD51AP1; RAD51-associated protein 1
E 100340614 MORF4L1; mortality factor 4-like protein 1 K11339 MORF4L1; mortality factor 4-like protein 1
E 100353160 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 100356925 fidgetin-like protein 1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 100348975 DNA repair-scaffolding protein isoform X1 K22806 SPIDR; DNA repair-scaffolding protein
E 100357048 LRATD2; protein LRATD2 K22810 FAM84B; protein FAM84B
E 103346583 BRCA1-associated ATM activator 1 isoform X1 K23112 BRAT1; BRCA1-associated ATM activator 1
E 100353805 zinc finger SWIM domain-containing protein 7 isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 100355600 ATPase SWSAP1 K25771 SWSAP1; ATPase SWSAP1
E 100353325 BRCA2-interacting transcriptional repressor EMSY isoform X6 K25790 EMSY; BRCA2-interacting transcriptional repressor EMSY
E 100343275 heat shock factor 2-binding protein isoform X1 K25791 HSF2BP; heat shock factor 2-binding protein
E 100347157 protein MMS22-like isoform X1 K26125 MMS22L; protein MMS22-like
E 100351134 tonsoku-like protein isoform X1 K09257 NFKBIL2; NF-kappa-B inhibitor-like protein 2
E 100350317 biorientation of chromosomes in cell division protein 1-like 1 isoform X1 K27262 BOD1L1; biorientation of chromosomes in cell division protein 1-like 1
E 100341340 PCNA-interacting partner isoform X3 K27412 PARPBP; PCNA-interacting partner
E 100348265 HROB; homologous recombination OB-fold protein isoform X1 K27803 HROB; homologous recombination OB-fold protein
E 100337967 DNA helicase MCM8 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 100340330 DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 100351956 X-ray repair cross-complementing protein 6 isoform X1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 100347656 X-ray repair cross-complementing protein 5 isoform X2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E 100125348 PRKDC; DNA-dependent protein kinase catalytic subunit K06642 PRKDC; DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1]
D MRX complex
E 100356946 MRE11; double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 100328725 RAD50; DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 100340318 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 100355796 DNA repair protein XRCC4 isoform X1 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 100351030 DNA polymerase lambda isoform X3 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 100358003 DNA-directed DNA/RNA polymerase mu isoform X1 K03513 POLM; DNA polymerase mu [EC:2.7.7.7]
E 100353958 DNA nucleotidylexotransferase K00977 DNTT; DNA nucleotidylexotransferase [EC:2.7.7.31]
E 100348691 DNA polymerase beta isoform X1 K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 103348750 LOW QUALITY PROTEIN: aprataxin-like K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 100351115 aprataxin isoform X2 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 100342776 aprataxin and PNK-like factor isoform X1 K13295 APLF; aprataxin and PNK-like factor [EC:3.1.-.-]
E 100349686 protein artemis isoform X1 K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E 100351584 tyrosyl-DNA phosphodiesterase 2 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 100348571 structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X6 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
E 100340790 PWWP3B; PWWP domain-containing DNA repair factor 3B K23386 PWWP3; PWWP domain-containing DNA repair factor 3
E 100342285 CYREN; cell cycle regulator of non-homologous end joining isoform X2 K26155 CYREN; cell cycle regulator of non-homologous end joining
E 127490083 jmjC domain-containing protein 8 isoform X1 K25792 JMJD8; jumonji domain-containing protein 8
E 100337713 SHLD1; shieldin complex subunit 1 isoform X1 K26128 SHLD1; shieldin complex subunit 1
E 100351279 SHLD2; shieldin complex subunit 2 isoform X1 K26129 SHLD2; shieldin complex subunit 2
E 127492811 shieldin complex subunit 3 K26130 SHLD3; shieldin complex subunit 3
E 108178974 BEN domain-containing protein 4 isoform X1 K27845 BEND4; BEN domain-containing protein 4
C FA (Fanconi anemia) pathway
D FA core complex
E 100340806 Fanconi anemia group A protein isoform X1 K10888 FANCA; fanconi anemia group A protein
E 100355151 Fanconi anemia group B protein K10889 FANCB; fanconi anemia group B protein
E 100344788 Fanconi anemia group C protein isoform X2 K10890 FANCC; fanconi anemia group C protein
E 100359053 Fanconi anemia group E protein isoform X1 K10892 FANCE; fanconi anemia group E protein
E 100340638 Fanconi anemia group F protein K10893 FANCF; fanconi anemia group F protein
E 100346331 Fanconi anemia group G protein K10894 FANCG; fanconi anemia group G protein
E 100344973 E3 ubiquitin-protein ligase FANCL isoform X9 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 100354209 LOW QUALITY PROTEIN: Fanconi anemia group M protein K10896 FANCM; fanconi anemia group M protein
E 100357310 Fanconi anemia core complex-associated protein 24 isoform X1 K10898 FAAP24; fanconi anemia-associated protein
E 108176186 LOW QUALITY PROTEIN: Fanconi anemia core complex-associated protein 100 K10993 FAAP100; fanconi anemia core complex 100 kDa subunit
D FA core complex binding factors
E 100358704 transcription factor HES-1 K06054 HES1; hairy and enhancer of split 1
E 100534620 CENPS; centromere protein S K11511 APITD1; centromere protein S
E 100354742 centromere protein X K15360 STRA13; centromere protein X
E 100357338 ubiquitin-conjugating enzyme E2 T K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 100345123 recQ-like DNA helicase BLM isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100345272 DNA topoisomerase 3-beta-1 isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 100352297 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 100348643 recQ-mediated genome instability protein 2 isoform X1 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 100346581 Fanconi anemia group D2 protein isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 100347941 Fanconi anemia group I protein isoform X2 K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 100347269 breast cancer type 1 susceptibility protein isoform X2 K10605 BRCA1; breast cancer type 1 susceptibility protein [EC:2.3.2.27]
E 100355331 breast cancer type 2 susceptibility protein isoform X2 K08775 BRCA2; breast cancer 2 susceptibility protein
E 100359326 LOW QUALITY PROTEIN: Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 100356031 partner and localizer of BRCA2 isoform X1 K10897 PALB2; partner and localizer of BRCA2
D Other FA pathway factors
E 100345357 fanconi-associated nuclease 1 isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 100008661 RAD51; DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
E 100339674 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 100356602 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 100358366 ubiquitin carboxyl-terminal hydrolase 1 K11832 USP1; ubiquitin carboxyl-terminal hydrolase 1 [EC:3.4.19.12]
E 100354945 WD repeat-containing protein 48 isoform X2 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 100341981 serine/threonine-protein phosphatase 6 catalytic subunit isoform X1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 100354502 serine/threonine-protein phosphatase 6 regulatory subunit 1 isoform X1 K15499 PPP6R1; serine/threonine-protein phosphatase 6 regulatory subunit 1
E 100352630 serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X1 K15500 PPP6R2; serine/threonine-protein phosphatase 6 regulatory subunit 2
E 100338706 serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X18 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 100343070 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1 K15502 ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
E 100340911 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X1 K15503 ANKRD44; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B
E 100350556 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C K15504 ANKRD52; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C
E 127491149 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C K15504 ANKRD52; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C
D Ubiquitin ligases
E 100343659 E3 ubiquitin-protein ligase RNF8 isoform X1 K10667 RNF8; E3 ubiquitin-protein ligase RNF8 [EC:2.3.2.27]
E 100348840 E3 ubiquitin-protein ligase RNF168 K20779 RNF168; E3 ubiquitin-protein ligase RNF168 [EC:2.3.2.31]
E 100356853 E3 ubiquitin-protein ligase RNF169 isoform X1 K20805 RNF169; E3 ubiquitin-protein ligase RNF169 [EC:2.3.2.31]
E 100340267 E3 ubiquitin-protein ligase HERC2 K10595 HERC2; E3 ubiquitin-protein ligase HERC2 [EC:2.3.2.26]
D Others
E 100343593 telomerase Cajal body protein 1 isoform X2 K23314 WRAP53; telomerase Cajal body protein 1
E 100339809 zinc finger CW-type PWWP domain protein 1 isoform X3 K24688 ZCWPW1; zinc finger CW-type PWWP domain protein 1
E 100348233 WD repeat-containing protein 70 isoform X1 K24752 WDR70; WD repeat-containing protein 70
E 100328690 WDR76; WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 100357494 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 100342545 DNA polymerase iota isoform X1 K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D 100354961 DNA polymerase iota-like K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D 100352218 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 100345920 DNA repair protein REV1 isoform X5 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 100359215 DNA polymerase zeta catalytic subunit isoform X2 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
D 100349293 DNA polymerase nu isoform X4 K16618 POLN; DNA polymerase nu [EC:2.7.7.7]
C Rad6 epistasis group
D 100339096 ubiquitin-conjugating enzyme E2 A K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 100345720 ubiquitin-conjugating enzyme E2 A-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 100009132 UBE2B; ubiquitin-conjugating enzyme E2 B K10574 UBE2B; ubiquitin-conjugating enzyme E2 B [EC:2.3.2.23]
D 100345274 E3 ubiquitin-protein ligase RAD18 isoform X1 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D 100009232 HLTF; helicase-like transcription factor isoform alpha K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 108177259 ubiquitin-conjugating enzyme E2 variant 1-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100352653 ubiquitin-conjugating enzyme E2 variant 2 isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100350804 ubiquitin-conjugating enzyme E2 variant 1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100344152 ubiquitin-conjugating enzyme E2 variant 2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100339144 ubiquitin-conjugating enzyme E2 variant 2-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100341418 ubiquitin-conjugating enzyme E2 variant 2-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100344250 ubiquitin-conjugating enzyme E2 variant 2-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100359268 ubiquitin-conjugating enzyme E2 variant 2-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 127485605 ubiquitin-conjugating enzyme E2 variant 2-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100339349 ubiquitin-conjugating enzyme E2 N-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 100343655 ubiquitin-conjugating enzyme E2 N K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 100353764 ubiquitin-conjugating enzyme E2 N K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 100341684 ubiquitin-conjugating enzyme E2 N-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 100339381 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 100341340 PCNA-interacting partner isoform X3 K27412 PARPBP; PCNA-interacting partner
D 100351432 DNA-dependent metalloprotease SPRTN K24051 SPRTN; SprT-like domain-contaning protein Spartan
D 103351865 GCNA; germ cell nuclear acidic protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D 100356526 cell cycle checkpoint control protein RAD9A isoform X5 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 100358383 cell cycle checkpoint control protein RAD9B isoform X1 K10995 RAD9B; cell cycle checkpoint control protein RAD9B
D 100357438 checkpoint protein HUS1 isoform X1 K10903 HUS1; HUS1 checkpoint protein
D 100354386 LOW QUALITY PROTEIN: checkpoint protein HUS1B K10996 HUS1B; checkpoint protein HUS1B
D 100351835 cell cycle checkpoint protein RAD1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 100339735 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 100344167 LOW QUALITY PROTEIN: cell cycle checkpoint protein RAD17-like K06662 HRAD17; cell cycle checkpoint protein
D 100343517 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 100342140 replication factor C subunit 4 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
D 100339186 replication factor C subunit 3 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D 100345366 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 100351835 cell cycle checkpoint protein RAD1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 100345229 protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 127487407 protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 100348340 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D 100347850 claspin K25773 CLSPN; claspin
C Triple T complex
D 100356602 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 100352399 TELO2-interacting protein 1 homolog isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 100358152 TELO2-interacting protein 2 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 100350337 large proline-rich protein BAG6 isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 100328764 UBL4A; ubiquitin-like protein 4A K23388 UBL4; ubiquitin-like protein 4
D 100338070 ubiquitin-like protein 4B K23388 UBL4; ubiquitin-like protein 4
D 127488011 Golgi to ER traffic protein 4 homolog isoform X1 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 100359062 serine/threonine-protein kinase ATR isoform X2 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 100355293 ATR-interacting protein isoform X1 K10905 ATRIP; ATR interacting protein
D 100349299 serine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 100009292 TP53; cellular tumor antigen p53 K04451 TP53; tumor protein p53
D 100345729 serine/threonine-protein kinase Chk1 K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D 100339430 serine/threonine-protein kinase Chk2 isoform X1 K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D 100354280 M-phase inducer phosphatase 1 isoform X1 K06645 CDC25A; M-phase inducer phosphatase 1 [EC:3.1.3.48]
D 103348219 M-phase inducer phosphatase 2 isoform X1 K05866 CDC25B; M-phase inducer phosphatase 2 [EC:3.1.3.48]
D 100343637 M-phase inducer phosphatase 3 isoform X1 K05867 CDC25C; M-phase inducer phosphatase 3 [EC:3.1.3.48]
D 100358299 14-3-3 protein beta/alpha K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
D 100008930 YWHAQ; 14-3-3 protein theta K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
D 100342694 14-3-3 protein zeta/delta K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
D 100328734 YWHAH; 14-3-3 protein eta K16198 YWHAG_H; 14-3-3 protein gamma/eta
D 100354276 14-3-3 protein gamma K16198 YWHAG_H; 14-3-3 protein gamma/eta
D 127488492 14-3-3 protein gamma K16198 YWHAG_H; 14-3-3 protein gamma/eta
D 100358813 14-3-3 protein epsilon isoform X4 K06630 YWHAE; 14-3-3 protein epsilon
D 100352991 neuron navigator 2 isoform X4 K19483 NAV2; neuron navigator 2 [EC:5.6.2.4]
D 100356408 wee1-like protein kinase 2 K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 100345730 wee1-like protein kinase isoform X1 K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 100342071 LOW QUALITY PROTEIN: period circadian protein homolog 1 K21944 PER1; period circadian protein 1
D 100349720 period circadian protein homolog 2 K02633 PER2; period circadian protein 2
D 100351506 mediator of DNA damage checkpoint protein 1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 100345115 plastin-3 isoform X2 K17336 PLS3; plastin-3
D 103347192 apoptosis-enhancing nuclease isoform X1 K18340 AEN; apoptosis-enhancing nuclease [EC:3.1.-.-]
D 100349159 serine/threonine-protein kinase PLK3 K08862 PLK3; polo-like kinase 3 [EC:2.7.11.21]
D 100349662 serine/threonine-protein kinase Nek4 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100346687 serine/threonine-protein kinase Nek1 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100345120 LOW QUALITY PROTEIN: serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100340252 serine/threonine-protein kinase Nek10 isoform X1 K20879 NEK10; serine/threonine-protein kinase Nek10 [EC:2.7.11.1]
D 100339160 serine/threonine-protein kinase Nek11 isoform X1 K20880 NEK11; serine/threonine-protein kinase Nek11 [EC:2.7.11.1]
D 100357779 protein downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son
D 100358626 KN motif and ankyrin repeat domain-containing protein 4 K22808 KANK; KN motif and ankyrin repeat domain-containing protein
D 100358825 KN motif and ankyrin repeat domain-containing protein 3 K22808 KANK; KN motif and ankyrin repeat domain-containing protein
D 103348186 KN motif and ankyrin repeat domain-containing protein 1 isoform X1 K22808 KANK; KN motif and ankyrin repeat domain-containing protein
D 100357938 schlafen family member 13 K24458 SLFN11; schlafen family member 11 [EC:3.6.-.-]
D 100347474 charged multivesicular body protein 4c isoform X1 K24782 CHMP4C; charged multivesicular body protein 4C
D 100338152 vacuolar protein sorting-associated protein 4B K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 100340140 vacuolar protein sorting-associated protein 4A isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 100343960 LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 4A-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 127489134 vacuolar protein sorting-associated protein 4A isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 100345353 abscission/NoCut checkpoint regulator isoform X2 K24778 ZFYVE19; abscission/NoCut checkpoint regulator
D 100346302 replication stress response regulator SDE2 K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D 100341958 DNA polymerase theta isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 100349437 myb-binding protein 1A isoform X2 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 100342519 DNA-directed primase/polymerase protein isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
D 103347617 DNA-directed primase/polymerase protein-like isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
D 127487426 DNA-directed primase/polymerase protein isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
D 103347387 DNA-directed primase/polymerase protein isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 100355546 three-prime repair exonuclease 1 isoform X2 K10790 TREX1; three prime repair exonuclease 1 [EC:3.1.11.2]
D 100357277 three prime repair exonuclease 2 K10791 TREX2; three prime repair exonuclease 2 [EC:3.1.11.2]
D 100359072 DNA cross-link repair 1A protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D 100354044 5' exonuclease Apollo isoform X1 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 100338162 exonuclease V isoform X1 K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 100357722 endonuclease V isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 127486842 endonuclease V-like K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 100350819 DNA annealing helicase and endonuclease ZRANB3 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
C Helicases
D 100349596 helicase POLQ-like isoform X1 K19178 HELQ; POLQ-like helicase [EC:5.6.2.4]
D 100345815 DNA excision repair protein ERCC-6-like 2 isoform X1 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 100358501 pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 100340843 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 100345435 pre-mRNA-splicing factor SPF27 K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 100350581 pleiotropic regulator 1 isoform X1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 100356660 nucleotide triphosphate diphosphatase NUDT15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 100348373 oxidized purine nucleoside triphosphate hydrolase K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D 100357274 8-oxo-dGDP phosphatase NUDT18 K17817 NUDT18; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D 100346219 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 100341806 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform X1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 100345823 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 100346325 ribonucleoside-diphosphate reductase subunit M2 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 100337711 ribonucleoside-diphosphate reductase subunit M2 B isoform X2 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 100344525 methylated-DNA--protein-cysteine methyltransferase isoform X2 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E 100338366 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 100352573 single-strand selective monofunctional uracil DNA glycosylase isoform X1 K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E 100357369 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 100344165 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 100008866 SSBP1; single-stranded DNA-binding protein, mitochondrial precursor K03111 ssb; single-strand DNA-binding protein
E 100342744 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
E 100357130 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
E 127490310 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 100008866 SSBP1; single-stranded DNA-binding protein, mitochondrial precursor K03111 ssb; single-strand DNA-binding protein
D 100342744 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
D 100357130 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
D 127490310 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 100356660 nucleotide triphosphate diphosphatase NUDT15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 100346219 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 100341806 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform X1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024