+F Repair protein KO
#
DNA Repair and Recombination Proteins - Oryza sativa japonica (Japanese rice)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 9272524 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 4332045 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 9272017 OsCPDII; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 4337373 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 4330890 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 4351781 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 9269803 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 4346365 uncharacterized protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 4340610 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 9268162 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 4347697 DNA-(apurinic or apyrimidinic site) endonuclease 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 4349968 OspolD1; DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 4331489 OJ1528D07.1; DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 4327080 uncharacterized protein K03504 POLD3; DNA polymerase delta subunit 3
F 4347604 P0669G04.6; uncharacterized LOC4347604 K03505 POLD4; DNA polymerase delta subunit 4
F 4344737 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
F 112936215 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 4329458 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 4337886 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 4347894 DNA polymerase II subunit B4 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 4331062 Cyclin; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 4339464 FEN1A; flap endonuclease 1-A K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 4334691 FEN1B; flap endonuclease 1-B K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 4348965 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 4340098 xrcc1; DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 4343446 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 4332518 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 4327876 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 4340604 OsPolL; dNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 4343013 ADPRT-1; poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 4326479 ADPRT-2-A; poly [ADP-ribose] polymerase 2-A K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 4329546 ADPRT-3; protein ADP-ribosyltransferase PARP3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 4326478 poly [ADP-ribose] polymerase 2-B isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 4345619 DNA repair protein RAD4 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 4328500 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 4345632 probable ubiquitin receptor RAD23 isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 4347014 OsJ_29306; probable ubiquitin receptor RAD23 isoform 1 K10839 RAD23; UV excision repair protein RAD23
F 4340699 ubiquitin receptor RAD23d K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 4326152 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 4330476 uncharacterized protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 4334354 cullin-4 K10609 CUL4; cullin 4
F 4339794 DBB1; DNA damage-binding protein 1 isoform 1 K10610 DDB1; DNA damage-binding protein 1
F 4325482 DNA damage-binding protein 2-like K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 4345759 uncharacterized protein K15082 RAD7; DNA repair protein RAD7
F 4343361 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 4337831 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 9267835 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 136351388 DNA-directed RNA polymerase II subunit RPB1-like K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 4333571 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 4346392 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 4328083 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 4330570 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 4327549 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 9270850 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 4349748 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 4351463 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 4343168 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 4333343 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 4338726 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 4334766 DNA-directed RNA polymerases II, IV and V subunit 8B K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 4341946 DNA-directed RNA polymerases II, IV and V subunit 8B K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 4352511 DNA-directed RNA polymerases II, IV and V subunit 9B K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 4331295 DNA-directed RNA polymerases II, IV and V subunit 9B K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 4343902 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X1 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 4349985 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 4351671 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 4342517 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 9272152 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 9269422 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 136357350 DNA-directed RNA polymerases II, IV and V subunit 12-like K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 4326152 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 4330476 uncharacterized protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 4334354 cullin-4 K10609 CUL4; cullin 4
F 4339794 DBB1; DNA damage-binding protein 1 isoform 1 K10610 DDB1; DNA damage-binding protein 1
F 4329118 WD repeat-containing protein ATCSA-1 isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
F 4324761 WD repeat-containing protein ATCSA-1 isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 4326441 CSB; DNA excision repair protein CSB K10841 ERCC6; DNA excision repair protein ERCC-6
F 4326574 SNF2 domain-containing protein ENL1-like isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 4329068 UV-stimulated scaffold protein A homolog isoform X1 K23720 UVSSA; UV-stimulated scaffold protein A
F 4328219 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 4343996 OsJ_25233; transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 107281212 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 4325640 general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 4337788 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 4345313 general transcription and DNA repair factor IIH subunit TFB1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 4336358 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 4328152 general transcription and DNA repair factor IIH subunit TFB4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 4337426 general transcription and DNA repair factor IIH subunit TFB2 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 4343686 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 4338052 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 4338689 CAK-R2; cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 4334040 CYCH-1; cyclin-H1-1 K06634 CCNH; cyclin H
E 4340268 uncharacterized LOC4340268 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 4350497 uncharacterized protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 4337594 OsJ_16860; replication protein A 70 kDa DNA-binding subunit C K07466 RFA1; replication factor A1
E 4330902 OsJ_08582; replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 4332052 OsJ_09906; replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 4331236 OsJ_08977; replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 4330068 OsRPA32-2; replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 4327706 OsJ_01130; replication protein A 14 kDa subunit isoform X2 K10740 RPA3; replication factor A3
D Other NER factors
E 4349131 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 4331279 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 4331991 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 4348965 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 4342544 MMS19 nucleotide excision repair protein homolog K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 4330720 cullin-3A K03869 CUL3; cullin 3
E 4337175 cullin-3B K03869 CUL3; cullin 3
E 4344771 cullin-3A K03869 CUL3; cullin 3
E 4351227 uncharacterized protein K03872 ELOC; elongin-C
E 4344764 uncharacterized protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 4338271 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 4337442 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 4347016 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 4325353 DNA mismatch repair protein MSH7 isoform X1 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 4325393 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 4329835 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E 4349968 OspolD1; DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 4331489 OJ1528D07.1; DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 4327080 uncharacterized protein K03504 POLD3; DNA polymerase delta subunit 3
E 4347604 P0669G04.6; uncharacterized LOC4347604 K03505 POLD4; DNA polymerase delta subunit 4
E 4344737 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
E 112936215 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 4337594 OsJ_16860; replication protein A 70 kDa DNA-binding subunit C K07466 RFA1; replication factor A1
E 4330902 OsJ_08582; replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 4332052 OsJ_09906; replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 4331236 OsJ_08977; replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 4330068 OsRPA32-2; replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 4327706 OsJ_01130; replication protein A 14 kDa subunit isoform X2 K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 4350754 OsRFC1; replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 4351654 OsJ_35406; replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 4336704 OsRFC4; replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E 4330895 OsRFC3; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 4334389 OsJ_12910; replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
E 4349480 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 4331062 Cyclin; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 4327899 EXO-1; exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 4348965 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 4345168 uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
E 4345171 uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 4337137 MRE11; double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 4329409 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 4348951 NBS1; nibrin homolog K10867 NBN; nibrin
D BRCA1-core complex
E 4339293 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 4336384 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 107276010 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 4340143 uncharacterized protein K20776 BABAM; BRISC and BRCA1-A complex member 1
E 4342073 uncharacterized protein K12173 BRE; BRCA1-A complex subunit BRE
E 4339481 uncharacterized protein K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 136351125 uncharacterized protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 4332589 BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 4344363 LOW QUALITY PROTEIN: BRCT domain-containing protein At4g02110-like K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 4349978 uncharacterized protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 4337137 MRE11; double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 4329409 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 4348951 NBS1; nibrin homolog K10867 NBN; nibrin
D BRCA complex
E 4324417 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 4350923 DNA repair protein RAD51 homolog A K04482 RAD51; DNA repair protein RAD51
E 4352257 DNA repair protein RAD51 homolog B K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 4350923 DNA repair protein RAD51 homolog A K04482 RAD51; DNA repair protein RAD51
E 4352257 DNA repair protein RAD51 homolog B K04482 RAD51; DNA repair protein RAD51
E 4337655 DNA repair protein RAD51 homolog 2 K10869 RAD51L1; RAD51-like protein 1
E 4323853 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 4346376 DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 4329686 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 4325084 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 4347552 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
E 4334803 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 4330819 OsJ_08484; dNA repair and recombination protein RAD54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 4338690 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 4343066 protein CHROMATIN REMODELING 35 isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 4340671 protein CHROMATIN REMODELING 35 isoform X2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 4344376 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 107277180 protein CHROMATIN REMODELING 35 isoform X2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 9267584 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 107277028 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 4351234 ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 4351098 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 4337828 ATP-dependent DNA helicase Q-like SIM isoform X1 K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 4330923 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 4335888 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 4336217 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 4330923 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 4335888 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 4347482 TOP3B; DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 9269718 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 4335680 BLAP75; RecQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 9270058 uncharacterized LOC9270058 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 4337594 OsJ_16860; replication protein A 70 kDa DNA-binding subunit C K07466 RFA1; replication factor A1
E 4330902 OsJ_08582; replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 4332052 OsJ_09906; replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 4331236 OsJ_08977; replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 4330068 OsRPA32-2; replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 4327706 OsJ_01130; replication protein A 14 kDa subunit isoform X2 K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 4346619 serine/threonine-protein phosphatase PP-X isozyme 2 isoform X1 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 4340824 uncharacterized protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 4326847 uncharacterized protein isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 4337863 uncharacterized protein isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 4331238 uncharacterized protein K19022 AP5B1; AP-5 complex subunit beta-1
E 4352391 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 4337073 uncharacterized protein K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 4339821 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 9267891 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 4351390 uncharacterized protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 4349672 uncharacterized protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 4339616 E3 SUMO-protein ligase MMS21 isoform X1 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 4328600 non-structural maintenance of chromosomes element 4 homolog A isoform 1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 4341536 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 4346005 non-structural maintenance of chromosomes element 4 homolog B K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 4337213 EME1; crossover junction endonuclease EME1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 4325837 ERCC4; crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 4325173 protein DELETION OF SUV3 SUPPRESSOR 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E 4327264 protein DELETION OF SUV3 SUPPRESSOR 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E 4342773 uncharacterized protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 9267637 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 4351480 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 4344420 GEN2; single-strand DNA endonuclease 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 4347617 GEN1; flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 4325331 uncharacterized protein isoform X1 K19026 SPG11; spatacsin
E 4326379 uncharacterized protein isoform X2 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 4350689 protein MRG1 isoform X2 K11339 MORF4L1; mortality factor 4-like protein 1
E 4334885 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 9272141 uncharacterized protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 9271031 ATPase family AAA domain-containing protein FIGL1 isoform X1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 4343787 uncharacterized protein K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 9272173 uncharacterized protein isoform X1 K27803 HROB; homologous recombination OB-fold protein
E 4339038 MCM8; probable DNA helicase MCM8 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 4340503 MCM9; probable DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 4340366 DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 4340109 single-stranded DNA-binding protein WHY1, chloroplastic K26559 WHY1; single-stranded DNA-binding protein WHY1
E 4328365 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 4342584 KU70; aTP-dependent DNA helicase 2 subunit KU70 isoform 1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 9267125 KU80; ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 4337137 MRE11; double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 4329409 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 9269006 putative DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 4334058 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 4340604 OsPolL; dNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 4332518 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 4343351 uncharacterized protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 4352068 uncharacterized protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
E 9272231 DEAD-box ATP-dependent RNA helicase FANCM K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 4335705 protein MHF1 homolog K11511 APITD1; centromere protein S
E 4336187 protein MHF2 homolog K15360 STRA13; centromere protein X
E 4324209 uncharacterized protein K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 4330923 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 4335888 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 4347482 TOP3B; DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 9269718 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 4335680 BLAP75; RecQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 9270058 uncharacterized LOC9270058 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 4342426 uncharacterized protein K10891 FANCD2; fanconi anemia group D2 protein
E 4332794 uncharacterized protein K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 4324417 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 136351125 uncharacterized protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 4340269 OsJ_20287; phosphodiesterase I K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 4350923 DNA repair protein RAD51 homolog A K04482 RAD51; DNA repair protein RAD51
E 4352257 DNA repair protein RAD51 homolog B K04482 RAD51; DNA repair protein RAD51
E 4323853 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 9271042 uncharacterized protein K11137 TELO2; telomere length regulation protein
E 4351590 uncharacterized protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 4325641 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 4339795 uncharacterized protein isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 4337029 uncharacterized protein isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 4327657 uncharacterized protein isoform X2 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 4334044 uncharacterized protein K23314 WRAP53; telomerase Cajal body protein 1
E 4348832 uncharacterized protein K24752 WDR70; WD repeat-containing protein 70
E 4345168 uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
E 4345171 uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 4325305 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 4341904 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 4344230 DNA polymerase zeta catalytic subunit isoform X1 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 4342488 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 4334386 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 4337993 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 4329524 DNA repair protein RAD5A isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 4335086 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 4344076 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 4346652 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 4333892 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 4352739 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 4337456 ubiquitin-conjugating enzyme E2 variant 1C isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 4325904 ubiquitin-conjugating enzyme E2 36 isoform X2 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 4331062 Cyclin; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 4332812 uncharacterized protein isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 4336469 uncharacterized protein K10903 HUS1; HUS1 checkpoint protein
D 4340017 uncharacterized protein isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 4332216 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 4351654 OsJ_35406; replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 4336704 OsRFC4; replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D 4330895 OsRFC3; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 4334389 OsJ_12910; replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D 4349480 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 4340017 uncharacterized protein isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 4338095 uncharacterized protein isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 4330814 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 9271042 uncharacterized protein K11137 TELO2; telomere length regulation protein
D 4349490 uncharacterized protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D 4324415 protein GET4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 4342103 P0548E04.6; serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 4326151 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 4333880 GF14F; 14-3-3-like protein GF14-F K06630 YWHAE; 14-3-3 protein epsilon
D 4329775 GF14E; 14-3-3-like protein GF14-E K06630 YWHAE; 14-3-3 protein epsilon
D 4336066 B0812A04.1; 14-3-3-like protein GF14-B isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 4345850 GF14A; 14-3-3-like protein GF14-A K06630 YWHAE; 14-3-3 protein epsilon
D 4350697 GF14D; 14-3-3-like protein GF14-D K06630 YWHAE; 14-3-3 protein epsilon
D 4345634 GF14C; 14-3-3-like protein GF14-C K06630 YWHAE; 14-3-3 protein epsilon
D 4325534 GF14G; 14-3-3-like protein GF14-G K06630 YWHAE; 14-3-3 protein epsilon
D 4328224 WEE1; wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 4333522 NEK1; serine/threonine-protein kinase Nek1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 4352734 NEK2; serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 4324792 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 4338922 B1110B01.5; serine/threonine-protein kinase Nek4 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 4329828 NEK6; serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 4342542 NEK3; serine/threonine-protein kinase Nek3 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 4352823 uncharacterized protein isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 4325480 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 4328374 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 107275709 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X2 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 4324395 uncharacterized protein K25059 SDE2; replication stress response regulator SDE2
D 4340007 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 9271500 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 4328227 rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 9272191 uncharacterized protein isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 4335730 DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 4344459 uncharacterized protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D 4324849 uncharacterized protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D 4347162 uncharacterized protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D 4327056 uncharacterized protein isoform X1 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 107275835 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 4341765 uncharacterized protein isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 4343803 uncharacterized protein isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 9269929 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 4325993 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 4325994 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 4337238 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 4338212 switch 2 isoform X1 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 4348844 OsJ_31829; pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 4335542 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 9272163 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 4332781 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 4333679 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 4340258 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 4331059 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 4339981 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 9266846 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 9272017 OsCPDII; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 4337373 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 4339711 alkylbase DNA glycosidase-like protein mag2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 136351165 alkylbase DNA glycosidase-like protein mag2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 4330890 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 4351781 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 9269803 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 4347081 uncharacterized protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 4341682 uncharacterized protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 4327631 uncharacterized protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 9272626 uncharacterized protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 4336309 uncharacterized protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 4345225 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 4341640 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 4340610 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 9268162 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 4327961 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E 4327960 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 4337150 DNA polymerase I A, chloroplastic-like isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 4344789 OsJ_26226; DNA polymerase I A, chloroplastic K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 4344791 DNA polymerase I B, mitochondrial isoform 1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 4337150 DNA polymerase I A, chloroplastic-like isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 4344789 OsJ_26226; DNA polymerase I A, chloroplastic K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 4344791 DNA polymerase I B, mitochondrial isoform 1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 3131432 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 3131433 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 3131434 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 3131431 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 4337429 uncharacterized protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 4326564 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 4325041 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 4333537 DNA repair protein RecA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 4350329 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 4325041 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 4333537 DNA repair protein RecA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 4350329 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 4340150 uncharacterized protein K04485 radA; DNA repair protein RadA/Sms
E 4330491 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 4334546 GYRA; probable DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 4326261 GYRB; dNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 4344306 uncharacterized protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 4325041 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 4333537 DNA repair protein RecA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
D 4350329 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 4326564 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 4333679 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024