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Transcription Machinery - Pseudomonas sp. ATCC 13867
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E H681_12825 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E H681_02900 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E H681_02740 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E H681_02745 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E H681_24240 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E H681_02415 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E H681_07725 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E H681_06105 ECF subfamily RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E H681_06700 algU; RNA polymerase sigma factor AlgU K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E H681_10665 RNA polymerase sigma factor SigX K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E H681_18165 putative sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E H681_02205 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E H681_01700 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
E H681_05380 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E H681_09070 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E H681_18275 ATP-dependent helicase HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E H681_21065 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
E H681_03195 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
E H681_02715 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E H681_05550 glutathione S-transferase domain-containing protein K03599 sspA; stringent starvation protein A
E H681_05555 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
E H681_15455 putative two-component response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E H681_06705 anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA
E H681_06710 sigma E regulatory protein MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
E H681_06715 positive regulator for alginate biosynthesis MucC K03803 rseC; sigma-E factor negative regulatory protein RseC
D Transcription elongation factors
E H681_20940 TraR/DksA family transcriptional regulator K06204 dksA; DnaK suppressor protein
E H681_01135 RNA polymerase-binding protein DksA K06204 dksA; DnaK suppressor protein
E H681_21115 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E H681_15750 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E H681_01380 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
E H681_07930 transcriptional antiterminator Rof K19000 rof; Rho-binding antiterminator
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 30, 2022