+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Plasmodium gaboni

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E PGSY75_0021000 protein kinase 5 K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] E PGSY75_1014400 MO15-related protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E PGSY75_1414600 RNA guanylyltransferase K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] D Cap binding complex E PGSY75_0415500 putative nuclear cap-binding protein K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E PGSY75_0109200 putative mRNA cleavage factor-like protein K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 D Pre-mRNA cleavage factor IIm (CFIIm) E PGSY75_0821600 putative clp1-related protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] D Cleavage and polyadenylation specificity factor (CPSF) complex E PGSY75_1438500 putative cleavage and polyadenylation specificity factor K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E PGSY75_1243800 putative microtubule associated katanin K14962 WDR82; COMPASS component SWD2 E PGSY75_1414400 serine/threonine protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E PGSY75_0620500 putative cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1 D U7-dependent histone pre-mRNA processing factors E PGSY75_1414800 putative small nuclear ribonucleoprotein-associated protein B K11086 SNRPB; small nuclear ribonucleoprotein B and B' E PGSY75_0909800 putative small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3 E PGSY75_1350200 putative small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E E PGSY75_0822300 putative small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G E PGSY75_1438500 putative cleavage and polyadenylation specificity factor K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E PGSY75_0519000 hypothetical protein K18710 SLBP; histone RNA hairpin-binding protein D DRB sensitivity inducing factor (DSIF) complex E PGSY75_1030000 putative transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4 E PGSY75_0610900 putative transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E PGSY75_0729500 putative mRNA (N6-adenosine)-methyltransferase K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] E PGSY75_1235500 putative mRNA methyltransferase K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E PGSY75_1230800 hypothetical protein K22824 WTAP; pre-mRNA-splicing regulator WTAP D Poly(A) addition factors E PGSY75_0625600 putative poly(A) polymerase PAP K14376 PAP; poly(A) polymerase [EC:2.7.7.19] D Negative regulators of mRNA 3' end processing C Other processing factors D PGSY75_1467500 putative DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17 D PGSY75_0623100 putative coronin binding protein K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 B mRNA surveillance and transport factors C Transport factors D EJC complex E PGSY75_1406000 putative RNA-binding protein K12876 RBM8A; RNA-binding protein 8A E PGSY75_0725200 mago nashi protein-like protein K12877 MAGOH; protein mago nashi E PGSY75_0615700 putative RNA and export factor binding protein K12881 THOC4; THO complex subunit 4 E PGSY75_0209800 ATP-dependent RNA helicase UAP56 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] E PGSY75_0422700 putative eukaryotic initiation factor K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] D TREX complex E PGSY75_0615700 putative RNA and export factor binding protein K12881 THOC4; THO complex subunit 4 D TREX-2 complex E PGSY75_0721800 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1 E PGSY75_1027700 centrin-3 K16466 CETN3; centrin-3 D Nuclear pore complex E PGSY75_1230700 protein transport protein SEC13 K14004 SEC13; protein transport protein SEC13 E PGSY75_1027700 centrin-3 K16466 CETN3; centrin-3 D Ran-mediated transport factors E PGSY75_1117700 GTP-binding nuclear protein RAN/TC4 K07936 RAN; GTP-binding nuclear protein Ran E PGSY75_1427900 conserved protein, unknown function K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B E PGSY75_0934700 putative UBX domain K18726 FAF2; FAS-associated factor 2 E PGSY75_0619400 cell division cycle protein 48-like protein K13525 VCP; transitional endoplasmic reticulum ATPase E PGSY75_0302900 putative exportin-1 K14290 XPO1; exportin-1 E PGSY75_0910100 putative Ran-binding protein K18460 XPO7; exportin-7 D eIF4F and regulatory proteins E PGSY75_0315100 translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E PGSY75_1468700 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E PGSY75_0810600 putative RNA helicase K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PGSY75_1031500 putative DEAD/DEAH box helicase K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PGSY75_1224300 putative polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein E PGSY75_0529500 putative cell cycle regulator protein K07575 MCTS; malignant T-cell-amplified sequence E PGSY75_0813600 putative translation initiation factor SUI1 K24272 DENR; density-regulated protein D APOBEC1-ACF complex D Other transport factors E PGSY75_1209000 hypothetical protein K14294 WIBG; partner of Y14 and mago E PGSY75_0414500 putative RNA-binding protein K14411 MSI; RNA-binding protein Musashi E PGSY75_0722100 PelOta protein-like protein K06965 PELO; protein pelota E PGSY75_1459000 ATP-dependent RNA helicase DBP5 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E PGSY75_1235900 putative pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1 E PGSY75_0912500 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein E PGSY75_0711500 putative regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation C Surveillance factors D Surveillance complex E PGSY75_0212300 putative peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1 E PGSY75_1123400 putative translation elongation factor EF-1, subunit alpha K03267 ERF3; peptide chain release factor subunit 3 E PGSY75_1005500 putative regulator of nonsense transcripts K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E PGSY75_0925800 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2 D Protein phosphatase 2A E PGSY75_0925400 protein phosphatase-beta K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E PGSY75_1356400 putative phosphatase 2A regulatory subunit-related protein K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' D Other surveillance factors E PGSY75_0309700 putative SECIS-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 C Factors involved in mRNA localization D Cargo complex E PGSY75_0621300 putative mRNA binding PUM-HD domain protein-like protein K14844 PUF6; pumilio homology domain family member 6 E PGSY75_0204800 putative 3'-5' exonuclease K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 D Factors that have mRNA localization signals D Trans-acting binding proteins E PGSY75_0021200 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha E PGSY75_1338300 putative elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule E PGSY75_0315100 translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E PGSY75_1005500 putative regulator of nonsense transcripts K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E PGSY75_0810600 putative RNA helicase K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PGSY75_1031500 putative DEAD/DEAH box helicase K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PGSY75_0320800 ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E PGSY75_1474900 trailer hitch-like protein K18749 LSM14; protein LSM14 E PGSY75_0627700 transportin K18752 TNPO1; transportin-1 E PGSY75_0934800 cAMP-dependent protein kinase catalytic subunit K04345 PKA; protein kinase A [EC:2.7.11.11] D P-body specific factors E PGSY75_1308900 putative mRNA-decapping enzyme 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E PGSY75_1124400 putative U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E PGSY75_0520300 putative U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E PGSY75_0819900 putative U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E PGSY75_1107000 putative U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E PGSY75_1443300 putative U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E PGSY75_1325000 putative U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E PGSY75_1209200 putative U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E PGSY75_0829300 putative U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E PGSY75_0422300 alpha tubulin 2 K07374 TUBA; tubulin alpha E PGSY75_1103800 putative CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E PGSY75_1128600 putative CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E PGSY75_0519500 putative carbon catabolite repressor protein 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E PGSY75_0811300 CCR4-associated factor 1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E PGSY75_0925800 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2 E PGSY75_1027400 putative DNA-directed RNA polymerase II K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 D Stress granule specific factors E PGSY75_1224300 putative polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein E PGSY75_0024100B putative eukaryotic translation initiation factor eIF2A K15026 EIF2A; translation initiation factor 2A E PGSY75_0517700 putative eukaryotic translation initiation factor K03253 EIF3B; translation initiation factor 3 subunit B E PGSY75_1468700 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E PGSY75_0422700 putative eukaryotic initiation factor K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E PGSY75_0826700 receptor for activated c kinase K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein B mRNA degradation factors C 5'-3' decay D Decapping complex E PGSY75_1308900 putative mRNA-decapping enzyme 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E PGSY75_0320800 ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] D Lsm complex E PGSY75_1124400 putative U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E PGSY75_0520300 putative U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E PGSY75_0819900 putative U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E PGSY75_1107000 putative U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E PGSY75_1443300 putative U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E PGSY75_1325000 putative U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E PGSY75_1209200 putative U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E PGSY75_0829300 putative U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases E PGSY75_0909400 putative exoribonuclease K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors E PGSY75_0720000 putative exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 E PGSY75_0410400 putative exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E PGSY75_1307000 putative exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40 E PGSY75_1427800 putative exosome complex exonuclease RRP41 K11600 RRP41; exosome complex component RRP41 E PGSY75_1364500 putative exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E PGSY75_1359300 exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] E PGSY75_1445500 hypothetical protein K12592 C1D; exosome complex protein LRP1 E PGSY75_0903400 putative DEAD/DEAH box helicase K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] D TRAMP complex E PGSY75_1332400 putative nucleotidyltransferase K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E PGSY75_0602100 putative ATP-dependent RNA helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex D Ccr4-NOT complex E PGSY75_0519500 putative carbon catabolite repressor protein 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E PGSY75_1103800 putative CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E PGSY75_1128600 putative CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E PGSY75_0811300 CCR4-associated factor 1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E PGSY75_0507600 putative cell differentiation protein K12606 RCD1; CCR4-NOT transcription complex subunit 9 E PGSY75_1434000 putative CCR4-associated factor 16 K12608 CAF16; CCR4-NOT complex subunit CAF16 D Pan complex D Other 3'-5' decay factors E PGSY75_1443500 putative poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E PGSY75_0821300 putative ATP-dependent RNA helicase prh1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases D Helicases D Other RNA degradosome components E PGSY75_1015900 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C Other RNA degradation factors D Chaperones E PGSY75_1134000 heat shock protein 70 K04043 dnaK; molecular chaperone DnaK E PGSY75_1015600 heat shock protein 60 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E PGSY75_1232100 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E PGSY75_0410400 putative exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E PGSY75_0720000 putative exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 D Cofactors E PGSY75_1427800 putative exosome complex exonuclease RRP41 K11600 RRP41; exosome complex component RRP41 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024