+D GENES KO #

  KEGG Orthology (KO) - Shewanella sp. ANA-3

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:shn00010] D Shewana3_3148 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shewana3_0648 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shewana3_3350 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shewana3_1026 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shewana3_2122 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shewana3_2124 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shewana3_3351 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shewana3_0051 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shewana3_1116 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shewana3_2153 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shewana3_1736 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shewana3_0426 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shewana3_0427 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_1837 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shewana3_1788 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shewana3_2938 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shewana3_1694 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Shewana3_0250 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Shewana3_2523 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shewana3_3579 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shewana3_2072 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shewana3_2134 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shewana3_2553 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D Shewana3_0147 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shewana3_2258 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shewana3_2822 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:shn00020] D Shewana3_1705 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Shewana3_0433 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shewana3_1750 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Shewana3_2890 isocitrate/isopropylmalate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D Shewana3_1710 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Shewana3_1711 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_1713 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shewana3_1712 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shewana3_1708 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shewana3_1709 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shewana3_1706 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shewana3_1707 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shewana3_0403 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0404 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0401 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_3318 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shewana3_2302 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Shewana3_3509 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shewana3_0147 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shewana3_0426 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shewana3_0427 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:shn00030] D Shewana3_3148 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shewana3_2151 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shewana3_2150 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Shewana3_1677 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Shewana3_3888 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Shewana3_3353 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Shewana3_3147 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Shewana3_0978 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Shewana3_3145 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D Shewana3_1041 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Shewana3_3477 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Shewana3_1043 Phosphopentomutase N-terminal domain protein K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Shewana3_2134 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shewana3_0765 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shewana3_2149 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D Shewana3_2148 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Shewana3_3350 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shewana3_0648 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:shn00040] D Shewana3_1387 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_4088 Phosphoglycerate mutase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_2782 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shewana3_2065 class II aldolase/adducin family protein K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D Shewana3_3888 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Shewana3_2066 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D Shewana3_2064 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D Shewana3_2071 short-chain dehydrogenase/reductase SDR K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] C 00051 Fructose and mannose metabolism [PATH:shn00051] D Shewana3_0069 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shewana3_2790 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shewana3_2707 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shewana3_0648 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shewana3_3350 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shewana3_1026 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shewana3_0432 HAD-superfamily hydrolase, subfamily IA, variant 3 K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:shn00052] D Shewana3_3579 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shewana3_2072 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shewana3_3578 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shewana3_2783 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shewana3_2782 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shewana3_2134 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shewana3_2700 tagatose-bisphosphate aldolase noncatalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ D Shewana3_2311 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shewana3_1931 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shewana3_2699 sugar isomerase (SIS) K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:shn00053] D Shewana3_1387 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_4088 Phosphoglycerate mutase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_4089 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Shewana3_2065 class II aldolase/adducin family protein K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D Shewana3_2070 L-arabinonate dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25] C 00500 Starch and sucrose metabolism [PATH:shn00500] D Shewana3_2311 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shewana3_1931 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shewana3_0066 alpha amylase, catalytic region K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7] D Shewana3_2782 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shewana3_2931 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Shewana3_2930 Starch synthase catalytic domain protein K00703 glgA; starch synthase [EC:2.4.1.21] D Shewana3_2934 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Shewana3_2932 glycogen/starch/alpha-glucan phosphorylases K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Shewana3_1924 glucan 1,4-alpha-glucosidase K01178 SGA1; glucoamylase [EC:3.2.1.3] D Shewana3_2935 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Shewana3_2258 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shewana3_2933 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D Shewana3_2134 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shewana3_3148 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shewana3_0069 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shewana3_2790 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:shn00520] D Shewana3_2984 chitinase. Glycosyl Hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D Shewana3_2293 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Shewana3_3115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Shewana3_2258 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shewana3_2698 N-acetylglucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59] D Shewana3_3112 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Shewana3_2697 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Shewana3_3114 ATPase, BadF/BadG/BcrA/BcrD type K18676 gspK; glucosamine kinase [EC:2.7.1.8] D Shewana3_0069 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shewana3_2790 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shewana3_3113 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shewana3_4125 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shewana3_1025 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Shewana3_4128 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Shewana3_3060 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Shewana3_1970 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D Shewana3_3205 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Shewana3_3204 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Shewana3_0684 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shewana3_0182 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shewana3_1302 polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Shewana3_1308 GCN5-related N-acetyltransferase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57] D Shewana3_1309 acylneuraminate cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] D Shewana3_2822 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D Shewana3_2134 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shewana3_2782 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shewana3_1387 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_4088 Phosphoglycerate mutase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_3578 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shewana3_2783 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shewana3_4089 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Shewana3_3148 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shewana3_2707 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shewana3_2931 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:shn00620] D Shewana3_2523 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shewana3_0426 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shewana3_0427 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_1555 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shewana3_1788 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shewana3_2938 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shewana3_1837 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shewana3_1694 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Shewana3_1552 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shewana3_1551 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shewana3_2153 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shewana3_0510 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shewana3_2291 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Shewana3_0250 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D Shewana3_2905 FAD linked oxidase domain protein K18930 dld; D-lactate dehydrogenase D Shewana3_2232 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Shewana3_2369 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Shewana3_1493 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Shewana3_0750 malic enzyme, NAD-binding K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Shewana3_3669 malic enzyme, NAD-binding K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Shewana3_3165 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Shewana3_3164 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shewana3_3166 sodium pump decarboxylases, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Shewana3_3509 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shewana3_2302 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Shewana3_0403 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0404 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0401 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_3318 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shewana3_3906 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Shewana3_0147 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shewana3_1736 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shewana3_2943 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_3761 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:shn00630] D Shewana3_2942 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D Shewana3_2523 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shewana3_2943 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Shewana3_3509 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shewana3_1705 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Shewana3_0433 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_0908 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6] D Shewana3_2683 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6] D Shewana3_3201 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shewana3_2565 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shewana3_3887 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shewana3_0360 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shewana3_0300 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_3098 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shewana3_3499 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shewana3_3501 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_3500 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shewana3_2554 6-phosphogluconate dehydrogenase, NAD-binding K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D Shewana3_2685 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shewana3_2148 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Shewana3_3298 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shewana3_3916 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shewana3_3920 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shewana3_3917 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shewana3_3921 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shewana3_0709 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_3918 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_3922 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_2091 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_2821 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:shn00640] D Shewana3_2523 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shewana3_1675 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Shewana3_1552 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shewana3_1551 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shewana3_2131 dehydrogenase, E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shewana3_2130 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shewana3_2129 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_1555 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_0510 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shewana3_3091 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shewana3_3106 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shewana3_1712 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shewana3_1713 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shewana3_3107 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shewana3_2770 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shewana3_3826 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Shewana3_3827 aconitase K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D Shewana3_3828 methylitaconate delta2-delta3-isomerase K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D Shewana3_0433 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shewana3_3825 2,3-dimethylmalate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Shewana3_0261 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:shn00650] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_2655 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shewana3_1788 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shewana3_3164 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shewana3_1708 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shewana3_1709 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shewana3_1706 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shewana3_1707 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shewana3_0403 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0404 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0401 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_3318 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shewana3_3091 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shewana3_3092 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Shewana3_1555 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shewana3_1668 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shewana3_3467 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shewana3_1667 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shewana3_3468 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shewana3_1666 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shewana3_3466 short-chain dehydrogenase/reductase SDR K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D Shewana3_2269 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_0356 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_2270 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shewana3_0357 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:shn00660] D Shewana3_2269 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_0356 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_2270 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shewana3_0357 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shewana3_1712 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shewana3_1713 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shewana3_3759 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Shewana3_3758 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Shewana3_3760 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:shn00562] D Shewana3_2284 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shewana3_2208 phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8] D Shewana3_3107 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shewana3_2770 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shewana3_1026 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:shn00190] D Shewana3_3123 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Shewana3_1708 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shewana3_1709 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shewana3_1706 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shewana3_1707 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shewana3_0403 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0404 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shewana3_0401 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shewana3_0601 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Shewana3_0602 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shewana3_0603 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Shewana3_3998 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shewana3_4035 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shewana3_4034 cytochrome C oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D Shewana3_3994 cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Shewana3_3992 cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Shewana3_3991 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Shewana3_3993 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Shewana3_3997 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shewana3_2107 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Shewana3_2108 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Shewana3_2109 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Shewana3_2110 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Shewana3_4033 cytochrome c oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D Shewana3_4032 cytochrome c oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D Shewana3_4031 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D Shewana3_0928 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shewana3_1241 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shewana3_0927 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shewana3_1242 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shewana3_1243 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D Shewana3_4132 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Shewana3_4130 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Shewana3_4131 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Shewana3_4133 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Shewana3_4129 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Shewana3_4136 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shewana3_4134 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Shewana3_4135 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Shewana3_3717 DHHA2 domain protein K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D Shewana3_2417 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:shn00680] D Shewana3_1837 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shewana3_1838 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D Shewana3_3298 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shewana3_3916 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shewana3_3920 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shewana3_3917 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shewana3_3921 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shewana3_0709 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_3918 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_3922 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_2091 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shewana3_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shewana3_0360 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shewana3_3201 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shewana3_1116 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shewana3_3906 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Shewana3_3509 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shewana3_3350 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shewana3_0648 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shewana3_1055 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shewana3_1056 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shewana3_1054 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shewana3_1552 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shewana3_1551 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shewana3_2523 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shewana3_1736 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shewana3_0051 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shewana3_3416 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shewana3_1973 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shewana3_1046 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Shewana3_2405 alpha-L-glutamate ligases, RimK family K14940 cofF; gamma-F420-2:alpha-L-glutamate ligase [EC:6.3.2.32] C 00910 Nitrogen metabolism [PATH:shn00910] D Shewana3_3430 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Shewana3_1900 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Shewana3_3433 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Shewana3_1901 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Shewana3_0658 respiratory nitrite reductase (cytochrome; ammonia-forming) precursor K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shewana3_2363 cytochrome c552 K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shewana3_0846 putative nitric oxide reductase (subunit B) transmembrane protein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D Shewana3_3011 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Shewana3_0474 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Shewana3_1785 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shewana3_0300 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_3098 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_3050 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shewana3_3051 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shewana3_1909 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:shn00920] D Shewana3_3189 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Shewana3_3190 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Shewana3_3191 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Shewana3_3192 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Shewana3_0864 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shewana3_0863 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shewana3_0866 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shewana3_2791 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shewana3_0170 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shewana3_0857 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Shewana3_0855 sulfite reductase (NADPH) alpha subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D Shewana3_0856 sulfite reductase (NADPH) beta subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D Shewana3_0633 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A D Shewana3_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B D Shewana3_0634 Polysulphide reductase, NrfD K08359 ttrC; tetrathionate reductase subunit C D Shewana3_3619 molybdopterin oxidoreductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shewana3_3103 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Shewana3_4106 Rhodanese domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D Shewana3_2282 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Shewana3_1561 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shewana3_2772 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Shewana3_3614 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shewana3_2552 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Shewana3_1984 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:shn00061] D Shewana3_0510 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shewana3_0343 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Shewana3_0344 acyl carrier protein, putative K02078 acpP; acyl carrier protein D Shewana3_2559 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shewana3_2560 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shewana3_1581 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shewana3_0329 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shewana3_1475 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shewana3_2557 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shewana3_0326 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shewana3_2558 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_2765 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_0327 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_1606 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Shewana3_2804 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shewana3_2655 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shewana3_3231 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_0080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_2386 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_3814 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:shn00071] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_1460 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_0023 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_2323 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shewana3_2154 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shewana3_3231 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_0080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_2386 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_3814 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_1837 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shewana3_1788 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shewana3_2938 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:shn00561] D Shewana3_2685 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shewana3_1694 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Shewana3_3756 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Shewana3_3988 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shewana3_2561 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Shewana3_3082 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shewana3_0568 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Shewana3_2402 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:shn00564] D Shewana3_0054 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Shewana3_3310 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Shewana3_3988 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shewana3_3082 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shewana3_0568 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Shewana3_2003 Glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] D Shewana3_2402 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Shewana3_0861 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shewana3_4119 alpha/beta hydrolase fold K01048 pldB; lysophospholipase [EC:3.1.1.5] D Shewana3_3480 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shewana3_0585 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shewana3_2810 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Shewana3_1988 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shewana3_3167 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shewana3_0588 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Shewana3_1610 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Shewana3_1102 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Shewana3_0364 phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D Shewana3_1424 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:shn00565] D Shewana3_0861 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:shn00600] D Shewana3_3115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism [PATH:shn00590] D Shewana3_0861 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shewana3_2457 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D Shewana3_2876 response regulator receiver protein K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] C 00591 Linoleic acid metabolism D Shewana3_0861 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:shn00592] D Shewana3_0861 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shewana3_1460 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_0023 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:shn01040] D Shewana3_0177 Delta-9 acyl-phospholipid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Shewana3_1537 lipolytic enzyme, G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shewana3_1688 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:shn00230] D Shewana3_0726 Nucleoside diphosphate pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shewana3_0169 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D Shewana3_1043 Phosphopentomutase N-terminal domain protein K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Shewana3_2134 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shewana3_0765 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shewana3_1483 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Shewana3_0440 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Shewana3_2546 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Shewana3_3197 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D Shewana3_1240 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Shewana3_2545 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Shewana3_3156 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Shewana3_3155 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Shewana3_3622 SAICAR synthetase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Shewana3_1745 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shewana3_0441 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shewana3_2447 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shewana3_1224 metallophosphoesterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shewana3_2454 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shewana3_1121 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shewana3_2547 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shewana3_0162 methyl-accepting chemotaxis sensory transducer K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D Shewana3_2439 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D Shewana3_2503 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shewana3_1044 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shewana3_0263 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Shewana3_3170 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Shewana3_0793 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Shewana3_1235 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Shewana3_2272 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shewana3_3367 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D Shewana3_1189 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Shewana3_1236 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shewana3_0890 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shewana3_3810 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Shewana3_1969 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shewana3_1968 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Shewana3_2603 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shewana3_2147 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Shewana3_2146 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D Shewana3_3812 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Shewana3_0411 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Shewana3_2418 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Shewana3_1111 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D Shewana3_3045 adenylate cyclase-related protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Shewana3_0387 adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D Shewana3_0814 putative adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D Shewana3_1072 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shewana3_0695 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shewana3_4117 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D Shewana3_2885 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Shewana3_1585 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Shewana3_2441 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shewana3_1114 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shewana3_0728 Calcineurin phosphoesterase C-terminal domain protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Shewana3_3211 Bis(5'nucleosyl)-tetraphosphatase, ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D Shewana3_0866 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shewana3_0864 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shewana3_0863 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:shn00240] D Shewana3_0968 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Shewana3_0967 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Shewana3_3070 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shewana3_3263 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Shewana3_1786 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D Shewana3_3776 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Shewana3_1981 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Shewana3_2813 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Shewana3_2272 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shewana3_1114 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shewana3_3645 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Shewana3_2608 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D Shewana3_1115 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Shewana3_1976 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Shewana3_1762 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Shewana3_1224 metallophosphoesterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shewana3_2454 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shewana3_1121 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shewana3_2547 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shewana3_3797 HAD-superfamily hydrolase, subfamily IA, variant 1 K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D Shewana3_3680 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D Shewana3_0263 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Shewana3_2544 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Shewana3_1585 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Shewana3_3476 Inosine/uridine-preferring nucleoside hydrolase K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-] D Shewana3_2885 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Shewana3_2573 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Shewana3_2977 CMP/dCMP deaminase, zinc-binding K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Shewana3_2603 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shewana3_1763 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Shewana3_1969 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shewana3_1968 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Shewana3_2146 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D Shewana3_1766 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Shewana3_3772 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Shewana3_1042 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D Shewana3_1410 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D Shewana3_3039 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:shn00250] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_3033 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Shewana3_1963 L-asparaginases, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Shewana3_1895 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shewana3_2549 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shewana3_2145 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shewana3_0360 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shewana3_2048 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shewana3_3902 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shewana3_3901 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shewana3_1072 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shewana3_0695 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shewana3_1745 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shewana3_3070 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shewana3_3091 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shewana3_3092 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Shewana3_3050 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shewana3_3051 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shewana3_1785 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shewana3_0819 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shewana3_0300 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_3098 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_0968 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Shewana3_0967 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Shewana3_1184 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shewana3_3113 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shewana3_4125 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shewana3_1483 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:shn00260] D Shewana3_1129 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_0652 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_1139 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shewana3_3613 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shewana3_1477 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shewana3_1140 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Shewana3_1141 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Shewana3_1208 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Shewana3_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shewana3_0360 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shewana3_3201 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shewana3_2685 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shewana3_0051 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shewana3_3416 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shewana3_1973 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shewana3_1046 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Shewana3_4104 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Shewana3_4105 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D Shewana3_3499 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shewana3_3501 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_3500 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shewana3_1988 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shewana3_3167 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shewana3_2295 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shewana3_0359 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Shewana3_1515 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Shewana3_1516 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:shn00270] D Shewana3_2282 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Shewana3_1561 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shewana3_2414 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Shewana3_3282 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shewana3_3469 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Shewana3_3354 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shewana3_1625 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shewana3_0829 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shewana3_3052 methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Shewana3_3170 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Shewana3_0089 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D Shewana3_2121 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shewana3_2643 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Shewana3_1776 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Shewana3_4194 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shewana3_0936 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Shewana3_2469 conserved hypothetical protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D Shewana3_1129 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_0652 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_1139 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shewana3_3613 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shewana3_1477 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shewana3_2772 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Shewana3_3614 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shewana3_0930 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Shewana3_3830 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shewana3_3160 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Shewana3_3445 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shewana3_2339 glutathione synthase K21456 GSS; glutathione synthase [EC:6.3.2.3] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_3103 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Shewana3_3509 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shewana3_2295 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shewana3_3188 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D Shewana3_3416 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shewana3_1973 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:shn00280] D Shewana3_3830 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shewana3_1742 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Shewana3_2131 dehydrogenase, E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shewana3_2130 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shewana3_2129 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_1672 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_1460 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_0023 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_2766 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Shewana3_3107 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shewana3_2770 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shewana3_3106 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shewana3_3091 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shewana3_1669 3-methylcrotonoyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D Shewana3_1671 carboxyl transferase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D Shewana3_1670 methylglutaconyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D Shewana3_1668 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shewana3_3467 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shewana3_1667 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shewana3_3468 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shewana3_1666 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:shn00290] D Shewana3_0359 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Shewana3_3759 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Shewana3_3758 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Shewana3_3760 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Shewana3_2269 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_0356 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_2270 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shewana3_0357 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shewana3_0355 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Shewana3_0358 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Shewana3_3830 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shewana3_1742 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Shewana3_2145 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shewana3_3761 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:shn00300] D Shewana3_1129 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_0652 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_1139 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shewana3_3613 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shewana3_1477 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shewana3_1656 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Shewana3_0966 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Shewana3_2818 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Shewana3_0610 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shewana3_1912 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shewana3_0391 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Shewana3_0390 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Shewana3_3748 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shewana3_3747 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:shn00310] D Shewana3_1711 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_3091 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shewana3_3092 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:shn00220] D Shewana3_3903 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Shewana3_3902 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shewana3_3901 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shewana3_1184 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shewana3_0300 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_3098 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_1785 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_2145 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shewana3_3767 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D Shewana3_2724 GCN5-related N-acetyltransferase K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1] D Shewana3_3904 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Shewana3_3905 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Shewana3_0610 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:shn00330] D Shewana3_2977 CMP/dCMP deaminase, zinc-binding K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Shewana3_1624 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Shewana3_3465 Porphyromonas-type peptidyl-arginine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D Shewana3_3871 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shewana3_3682 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shewana3_0829 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shewana3_1625 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shewana3_3464 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Shewana3_0611 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D Shewana3_1728 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D Shewana3_0612 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D Shewana3_2132 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D Shewana3_3093 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shewana3_1835 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shewana3_3101 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shewana3_3105 aldehyde dehydrogenase (acceptor) K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D Shewana3_1193 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Shewana3_0819 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shewana3_0954 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shewana3_4056 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shewana3_0955 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Shewana3_4057 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Shewana3_0312 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Shewana3_0266 2OG-Fe(II) oxygenase K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:shn00340] D Shewana3_1854 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Shewana3_1847 phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Shewana3_1849 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Shewana3_1850 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Shewana3_1848 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Shewana3_1851 histidinol-phosphate phosphatase / imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D Shewana3_1852 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shewana3_1853 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Shewana3_0101 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shewana3_1490 phenylalanine/histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shewana3_0335 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shewana3_0100 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Shewana3_0098 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Shewana3_3724 Arginase/agmatinase/formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D Shewana3_4004 flavocytochrome c K17363 urdA; urocanate reductase [EC:1.3.99.33] C 00350 Tyrosine metabolism [PATH:shn00350] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_1852 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shewana3_2121 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shewana3_2481 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Shewana3_2777 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Shewana3_2778 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Shewana3_1837 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shewana3_1788 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shewana3_2938 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shewana3_3092 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:shn00360] D Shewana3_2781 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_1852 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shewana3_2121 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shewana3_3549 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Shewana3_0306 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Shewana3_3464 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:shn00380] D Shewana3_0295 aminotransferase, class V K01556 KYNU; kynureninase [EC:3.7.1.3] D Shewana3_1711 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_3464 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Shewana3_0908 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6] D Shewana3_2683 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6] D Shewana3_3549 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Shewana3_0306 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:shn00400] D Shewana3_1734 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shewana3_3013 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shewana3_3528 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shewana3_3893 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Shewana3_0511 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Shewana3_0043 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Shewana3_3894 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Shewana3_1469 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Shewana3_1520 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shewana3_1519 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Shewana3_1518 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Shewana3_1517 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D Shewana3_1515 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Shewana3_1516 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Shewana3_3012 prephenate dehydrogenase / chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Shewana3_3007 chorismate mutase / prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_1852 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shewana3_2121 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shewana3_2781 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:shn00410] D Shewana3_3091 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shewana3_3409 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Shewana3_3106 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_3107 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shewana3_2770 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:shn00430] D Shewana3_3514 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_2487 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_2048 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shewana3_1785 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shewana3_1551 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shewana3_1552 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:shn00450] D Shewana3_3614 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shewana3_2414 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Shewana3_3282 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shewana3_3469 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Shewana3_2643 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Shewana3_0808 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Shewana3_2047 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Shewana3_0864 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shewana3_0863 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shewana3_0176 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Shewana3_0106 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Shewana3_1760 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:shn00460] D Shewana3_3514 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_2487 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_1963 L-asparaginases, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Shewana3_1895 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shewana3_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:shn00470] D Shewana3_0714 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shewana3_2307 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shewana3_1184 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shewana3_0180 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Shewana3_3745 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shewana3_0391 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Shewana3_0390 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:shn00480] D Shewana3_3514 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_2487 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_3160 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Shewana3_3445 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shewana3_2339 glutathione synthase K21456 GSS; glutathione synthase [EC:6.3.2.3] D Shewana3_3006 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shewana3_3324 peptidase M17, leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shewana3_0951 Dihydrofolate reductase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shewana3_3402 PepB aminopeptidase. Metallo peptidase. MEROPS family M17 K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D Shewana3_0897 aminopeptidase N. Metallo peptidase. MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shewana3_1779 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shewana3_2491 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shewana3_0950 Xaa-His dipeptidase. Metallo peptidase. MEROPS family M20C K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shewana3_0755 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_4049 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_3519 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_0013 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_2262 Glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_4054 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Shewana3_1750 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Shewana3_1677 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Shewana3_2151 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shewana3_1197 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Shewana3_2875 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Shewana3_4020 Redoxin domain protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D Shewana3_3871 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shewana3_3682 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shewana3_0829 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:shn00511] D Shewana3_3115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00540 Lipopolysaccharide biosynthesis [PATH:shn00540] D Shewana3_2803 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Shewana3_3738 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Shewana3_2805 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Shewana3_2666 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Shewana3_2802 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Shewana3_2583 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Shewana3_0677 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Shewana3_0775 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Shewana3_0676 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Shewana3_1906 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Shewana3_4102 Coproporphyrinogen oxidase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Shewana3_0848 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shewana3_1866 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D Shewana3_2228 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shewana3_4101 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D Shewana3_0849 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Shewana3_1583 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:shn00541] D Shewana3_2782 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shewana3_2783 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shewana3_1387 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_4088 Phosphoglycerate mutase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shewana3_4089 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Shewana3_1380 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1391 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1379 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shewana3_1392 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shewana3_1382 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shewana3_1381 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shewana3_2793 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shewana3_3709 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shewana3_2707 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shewana3_4128 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Shewana3_1302 polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Shewana3_1308 GCN5-related N-acetyltransferase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57] D Shewana3_1309 acylneuraminate cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] C 00550 Peptidoglycan biosynthesis [PATH:shn00550] D Shewana3_0684 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shewana3_0182 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shewana3_3742 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Shewana3_3745 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shewana3_3748 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shewana3_2307 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shewana3_3747 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Shewana3_2811 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Shewana3_3079 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shewana3_3721 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shewana3_3746 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shewana3_3743 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Shewana3_0858 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Shewana3_3900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shewana3_0623 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shewana3_0995 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shewana3_3749 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shewana3_0991 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shewana3_1985 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:shn00552] D Shewana3_3079 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shewana3_3721 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:shn00543] D Shewana3_2282 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:shn00730] D Shewana3_1936 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Shewana3_1937 thiamine-phosphate pyrophosphorylase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D Shewana3_1938 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D Shewana3_2280 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shewana3_2896 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shewana3_0708 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Shewana3_1941 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Shewana3_2901 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shewana3_1940 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D Shewana3_1101 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Shewana3_0589 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shewana3_3446 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3540 Peptidoglycan glycosyltransferase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3539 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_2441 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:shn00740] D Shewana3_2600 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shewana3_1098 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Shewana3_1096 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shewana3_0394 HAD-superfamily hydrolase, subfamily IA, variant 1 K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D Shewana3_0134 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Shewana3_1099 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Shewana3_1097 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Shewana3_2040 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Shewana3_3137 riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Shewana3_0505 oxidoreductase FAD/NAD(P)-binding domain protein K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D Shewana3_0726 Nucleoside diphosphate pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shewana3_1748 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D Shewana3_0792 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:shn00750] D Shewana3_1626 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Shewana3_3352 D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D Shewana3_1476 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D Shewana3_1973 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shewana3_3208 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Shewana3_3023 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Shewana3_1141 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:shn00760] D Shewana3_3033 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Shewana3_2128 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Shewana3_0422 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Shewana3_2503 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shewana3_1044 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shewana3_1224 metallophosphoesterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shewana3_2454 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shewana3_1121 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shewana3_2547 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shewana3_0998 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Shewana3_1114 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shewana3_2438 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Shewana3_3908 competence/damage-inducible protein cinA K03742 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Shewana3_1717 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Shewana3_2903 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Shewana3_0854 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Shewana3_0853 NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D Shewana3_3092 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:shn00770] D Shewana3_2269 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_0356 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shewana3_2270 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shewana3_0357 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shewana3_0355 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Shewana3_0358 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Shewana3_3408 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Shewana3_0780 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Shewana3_3409 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Shewana3_0184 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D Shewana3_3771 Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Shewana3_1114 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shewana3_4091 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Shewana3_0416 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Shewana3_3022 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Shewana3_2838 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Shewana3_1432 conserved hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D Shewana3_3830 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shewana3_2686 Pyridoxal-dependent decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:shn00780] D Shewana3_2517 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D Shewana3_0329 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shewana3_1475 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shewana3_2557 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shewana3_0326 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shewana3_2558 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_2765 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_0327 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_2804 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shewana3_4010 bioH protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D Shewana3_2518 aminotransferase, class I and II K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Shewana3_2520 aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Shewana3_2516 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Shewana3_0706 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D Shewana3_2519 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Shewana3_0183 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:shn00785] D Shewana3_0989 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Shewana3_0988 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_0426 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shewana3_0427 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shewana3_1710 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Shewana3_1711 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shewana3_2131 dehydrogenase, E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shewana3_2130 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shewana3_2129 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shewana3_3499 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shewana3_3501 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shewana3_3500 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:shn00790] D Shewana3_3775 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Shewana3_3446 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3540 Peptidoglycan glycosyltransferase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3539 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3482 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Shewana3_3081 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Shewana3_3080 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Shewana3_3407 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Shewana3_1024 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Shewana3_3214 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Shewana3_1480 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Shewana3_2600 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shewana3_1098 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Shewana3_0606 aminodeoxychorismate synthase, glutamine amidotransferase subunit K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D Shewana3_2303 aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D Shewana3_1764 aminodeoxychorismate lyase apoprotein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D Shewana3_1543 dihydroneopterin aldolase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7] D Shewana3_3507 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Shewana3_2780 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Shewana3_2781 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Shewana3_2163 radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Shewana3_2164 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Shewana3_2835 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Shewana3_4082 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shewana3_0274 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shewana3_0275 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shewana3_0277 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shewana3_0070 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shewana3_0131 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shewana3_4081 molybdopterin-guanine dinucleotide biosynthesis protein B K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shewana3_1495 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Shewana3_4080 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:shn00670] D Shewana3_3214 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Shewana3_3507 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Shewana3_0560 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Shewana3_2663 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Shewana3_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shewana3_2546 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Shewana3_0441 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shewana3_0034 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Shewana3_3501 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shewana3_3282 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shewana3_3039 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Shewana3_2821 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Shewana3_3612 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:shn00860] D Shewana3_1418 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shewana3_0768 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Shewana3_3071 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shewana3_2392 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shewana3_3734 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shewana3_0386 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Shewana3_0385 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Shewana3_0435 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Shewana3_0041 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Shewana3_4116 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Shewana3_0871 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shewana3_0028 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shewana3_0030 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shewana3_1198 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Shewana3_2440 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Shewana3_0384 protein of unknown function DUF513, hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Shewana3_0862 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Shewana3_1441 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Shewana3_3998 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shewana3_4035 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shewana3_3997 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shewana3_4201 ATPase associated with various cellular activities, AAA_5 K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D Shewana3_3274 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Shewana3_3275 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Shewana3_3053 cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Shewana3_3276 adenosylcobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Shewana3_3277 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Shewana3_3278 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Shewana3_3281 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D Shewana3_3233 pyridoxamine 5'-phosphate oxidase-related, FMN-binding K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D Shewana3_0946 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D Shewana3_0947 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:shn00130] D Shewana3_0125 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D Shewana3_0470 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Shewana3_0506 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Shewana3_0792 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shewana3_3502 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D Shewana3_1971 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Shewana3_3503 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Shewana3_3725 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Shewana3_1010 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D Shewana3_4071 isochorismate synthases K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D Shewana3_3965 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D Shewana3_3966 alpha/beta hydrolase fold K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D Shewana3_3967 O-succinylbenzoate-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D Shewana3_3968 O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D Shewana3_4123 1,4-Dihydroxy-2-naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D Shewana3_0906 uncharacterized domain 1 K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D Shewana3_1686 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Shewana3_0087 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:shn00900] D Shewana3_2901 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shewana3_2809 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Shewana3_1118 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Shewana3_0766 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Shewana3_1119 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Shewana3_1229 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Shewana3_3133 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_0792 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shewana3_2900 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Shewana3_3220 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Shewana3_2811 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:shn00903] D Shewana3_0609 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:shn00907] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_1668 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shewana3_1460 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_0023 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Shewana3_3353 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:shn00523] D Shewana3_1380 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1391 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1379 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shewana3_1392 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shewana3_1382 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shewana3_1381 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shewana3_2793 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shewana3_3709 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D Shewana3_4071 isochorismate synthases K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D Shewana3_1379 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:shn00332] D Shewana3_0954 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shewana3_4056 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shewana3_0955 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Shewana3_4057 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:shn00261] D Shewana3_0864 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shewana3_0863 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shewana3_1129 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_0652 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shewana3_1139 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shewana3_3613 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shewana3_1477 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shewana3_1656 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Shewana3_0966 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:shn00521] D Shewana3_2134 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shewana3_2284 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shewana3_1380 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1391 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1379 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shewana3_1392 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shewana3_1382 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shewana3_1381 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shewana3_2793 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shewana3_3709 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:shn00525] D Shewana3_1380 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1391 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shewana3_1379 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:shn00401] D Shewana3_3012 prephenate dehydrogenase / chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_1852 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shewana3_2121 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis D Shewana3_3120 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] C 00405 Phenazine biosynthesis D Shewana3_1520 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shewana3_1519 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Shewana3_2559 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shewana3_2558 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_2765 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_0327 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Shewana3_0343 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Shewana3_0344 acyl carrier protein, putative K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:shn00999] D Shewana3_3354 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shewana3_0043 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites D Shewana3_1510 siderophore biosynthesis protein K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:shn00362] D Shewana3_1460 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_0023 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_3552 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_3164 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:shn00627] D Shewana3_3464 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Shewana3_2291 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Shewana3_0792 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:shn00364] D Shewana3_3320 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Shewana3_3286 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:shn00625] D Shewana3_2938 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shewana3_1837 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shewana3_1788 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:shn00361] D Shewana3_3320 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Shewana3_3286 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:shn00623] D Shewana3_3320 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Shewana3_3286 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:shn00633] D Shewana3_0876 dihydropteridine reductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34] D Shewana3_1159 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D Shewana3_1460 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shewana3_0023 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:shn00643] D Shewana3_2481 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Shewana3_2777 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Shewana3_2778 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Shewana3_3464 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:shn00930] D Shewana3_0609 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D Shewana3_0024 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shewana3_1461 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation D Shewana3_0304 conserved hypothetical protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41] C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:shn00626] D Shewana3_2938 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shewana3_1837 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shewana3_1788 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:shn03020] D Shewana3_0192 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shewana3_0193 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shewana3_0224 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shewana3_3811 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:shn03010] D Shewana3_1977 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Shewana3_2815 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Shewana3_0205 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Shewana3_0223 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Shewana3_0216 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Shewana3_0701 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Shewana3_0195 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Shewana3_0213 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Shewana3_0693 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Shewana3_0198 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Shewana3_0222 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Shewana3_0194 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Shewana3_0221 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Shewana3_0212 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Shewana3_1033 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Shewana3_3017 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Shewana3_0208 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Shewana3_0703 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Shewana3_0203 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Shewana3_3140 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Shewana3_3084 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Shewana3_0189 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Shewana3_0202 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Shewana3_0199 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Shewana3_0200 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Shewana3_0211 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Shewana3_0214 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Shewana3_0191 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Shewana3_0704 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Shewana3_0190 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Shewana3_0188 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Shewana3_0692 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Shewana3_0209 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Shewana3_0218 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Shewana3_0206 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Shewana3_0225 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Shewana3_0215 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Shewana3_3014 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Shewana3_2046 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Shewana3_3219 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Shewana3_0204 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Shewana3_0201 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Shewana3_0210 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Shewana3_1892 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Shewana3_3218 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Shewana3_3769 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Shewana3_0207 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Shewana3_0217 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Shewana3_3670 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Shewana3_2562 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Shewana3_3768 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Shewana3_2045 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Shewana3_0220 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Shewana3_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0069 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0143 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0072 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0119 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0142 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0133 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0129 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0073 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0118 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0132 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0141 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0128 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:shn00970] D Shewana3_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0134 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0053 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0113 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0048 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0095 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0098 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0099 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0096 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0097 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0101 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0100 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0019 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0080 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shewana3_R0090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shewana3_R0033 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shewana3_R0037 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shewana3_R0034 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shewana3_R0061 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0067 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0066 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0024 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0025 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0027 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0079 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0026 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0091 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0014 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0021 tRNA-His K14226 tRNA-His; tRNA His D Shewana3_R0112 tRNA-His K14226 tRNA-His; tRNA His D Shewana3_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shewana3_R0135 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shewana3_R0070 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shewana3_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0032 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0028 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0122 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0123 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0081 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0089 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0082 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0104 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0108 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0105 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0110 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0106 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0109 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0107 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0031 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0035 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0117 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0039 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0074 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0075 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0076 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0050 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shewana3_R0052 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shewana3_R0121 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shewana3_R0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0114 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0023 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0102 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0077 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0078 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0088 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0041 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0047 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0083 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0131 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0049 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0051 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0030 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shewana3_R0013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0092 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0094 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0093 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0054 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0058 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0056 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0055 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0059 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0085 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0086 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0087 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0005 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Shewana3_1418 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shewana3_2669 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shewana3_1128 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shewana3_1953 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shewana3_2306 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shewana3_0017 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shewana3_0016 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shewana3_2043 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shewana3_2054 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shewana3_0106 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Shewana3_2664 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shewana3_1760 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shewana3_0034 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Shewana3_1131 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shewana3_1001 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shewana3_3136 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shewana3_3296 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shewana3_3673 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shewana3_1398 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shewana3_1230 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shewana3_1863 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shewana3_1864 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shewana3_3058 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shewana3_3886 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:shn03060] D Shewana3_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shewana3_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shewana3_1027 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shewana3_1019 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shewana3_1437 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shewana3_1438 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Shewana3_1020 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shewana3_1436 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shewana3_0006 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shewana3_3735 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shewana3_0053 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shewana3_3018 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shewana3_R0111 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Shewana3_3972 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shewana3_2343 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Shewana3_3728 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shewana3_3729 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shewana3_3730 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D Shewana3_3027 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shewana3_1540 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shewana3_3135 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] D Shewana3_4320 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] D Shewana3_4152 Lipoprotein signal peptidase-like protein K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:shn04122] D Shewana3_2280 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shewana3_3103 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Shewana3_0021 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shewana3_1650 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shewana3_2057 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Shewana3_2058 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Shewana3_2059 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Shewana3_2056 Formate dehydrogenase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Shewana3_1747 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Shewana3_0277 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shewana3_4082 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shewana3_0274 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shewana3_0276 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein D Shewana3_0130 [molybdopterin synthase] sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Shewana3_0275 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shewana3_0070 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shewana3_2896 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shewana3_1939 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D Shewana3_1938 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:shn03018] D Shewana3_3043 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Shewana3_2567 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Shewana3_0410 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:3.6.4.13] D Shewana3_1116 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shewana3_1035 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Shewana3_0810 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_1422 4a-hydroxytetrahydrobiopterin dehydratase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_0962 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_1162 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_2988 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_2928 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_2376 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_0697 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shewana3_3595 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13] D Shewana3_1999 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shewana3_3763 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shewana3_0408 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shewana3_0959 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shewana3_3567 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shewana3_0597 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shewana3_2417 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Shewana3_3406 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:shn03030] D Shewana3_2251 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2365 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_1577 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2800 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shewana3_2446 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shewana3_1767 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shewana3_0999 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shewana3_1132 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shewana3_0010 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shewana3_0713 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Shewana3_3086 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Shewana3_4229 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_3590 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_2366 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shewana3_2801 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shewana3_4109 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shewana3_1569 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:shn03410] D Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shewana3_3221 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Shewana3_1181 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Shewana3_4084 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Shewana3_1420 Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shewana3_0018 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Shewana3_1503 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Shewana3_4109 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shewana3_1569 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:shn03420] D Shewana3_2289 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Shewana3_3592 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Shewana3_2166 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Shewana3_1609 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Shewana3_0469 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shewana3_4204 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shewana3_4109 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shewana3_1569 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:shn03430] D Shewana3_1125 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Shewana3_0595 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Shewana3_3044 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D Shewana3_0469 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shewana3_4204 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shewana3_2572 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Shewana3_1234 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Shewana3_2899 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shewana3_4229 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_3590 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_2800 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shewana3_0010 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shewana3_2446 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shewana3_0999 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shewana3_1767 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shewana3_2251 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2365 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_1577 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_1132 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shewana3_1569 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shewana3_3891 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:shn03440] D Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shewana3_4229 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_3590 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_0011 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Shewana3_3024 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Shewana3_2444 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D Shewana3_1126 recA protein K03553 recA; recombination protein RecA D Shewana3_4109 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shewana3_1956 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Shewana3_1957 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Shewana3_1955 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Shewana3_0348 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shewana3_4215 helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shewana3_2246 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Shewana3_2245 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Shewana3_2247 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shewana3_2919 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shewana3_2800 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shewana3_0010 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shewana3_2446 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shewana3_0999 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shewana3_1767 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shewana3_2251 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2365 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_1577 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_1132 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shewana3_3672 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Shewana3_0702 single-strand binding protein/Primosomal replication protein n K02686 priB; primosomal replication protein N D Shewana3_2632 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:shn03250] D Shewana3_0785 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shewana3_2936 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:shn02010] D Shewana3_3189 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Shewana3_3190 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Shewana3_3191 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Shewana3_3192 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Shewana3_4077 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein D Shewana3_4078 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Shewana3_4079 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Shewana3_0278 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shewana3_0743 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shewana3_0666 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shewana3_0742 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shewana3_0279 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shewana3_0741 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shewana3_0280 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shewana3_3547 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein D Shewana3_3517 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shewana3_3516 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shewana3_3515 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shewana3_3097 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Shewana3_3094 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein D Shewana3_3095 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Shewana3_3096 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Shewana3_0681 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Shewana3_0680 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Shewana3_0679 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Shewana3_0682 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein D Shewana3_0678 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Shewana3_0877 sugar-binding protein, putative K10439 rbsB; ribose transport system substrate-binding protein D Shewana3_2073 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein D Shewana3_2076 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein D Shewana3_2075 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein D Shewana3_2074 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D Shewana3_2877 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shewana3_2734 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Shewana3_2733 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shewana3_2732 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shewana3_0882 extracellular solute-binding protein, family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Shewana3_0881 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Shewana3_0880 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Shewana3_2650 Acetate kinase K19226 sapA; cationic peptide transport system substrate-binding protein D Shewana3_2651 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shewana3_2652 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shewana3_2653 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shewana3_2654 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein D Shewana3_3272 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Shewana3_0074 transport protein, putative K09696 natB; sodium transport system permease protein D Shewana3_0075 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shewana3_2287 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shewana3_2285 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shewana3_2286 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Shewana3_0228 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Shewana3_0229 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Shewana3_0230 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Shewana3_0231 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Shewana3_3005 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Shewana3_3004 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Shewana3_0673 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Shewana3_0498 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein D Shewana3_0497 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Shewana3_3970 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Shewana3_3971 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shewana3_2584 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Shewana3_3526 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Shewana3_1419 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Shewana3_0381 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shewana3_0813 ABC transporter related K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Shewana3_0812 ABC transporter related K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D Shewana3_3455 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:shn02060] D Shewana3_2257 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Shewana3_2256 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D Shewana3_2258 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shewana3_2822 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D Shewana3_3042 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Shewana3_0668 phosphocarrier, HPr family K08485 ptsO; phosphocarrier protein NPr D Shewana3_0670 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:shn03070] D Shewana3_0725 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shewana3_0151 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Shewana3_0150 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D Shewana3_0153 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Shewana3_0154 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Shewana3_0155 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Shewana3_0156 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Shewana3_0157 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Shewana3_0158 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Shewana3_0159 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Shewana3_0160 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Shewana3_0152 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Shewana3_1019 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shewana3_1437 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shewana3_1438 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Shewana3_1020 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shewana3_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shewana3_1027 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shewana3_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shewana3_1436 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shewana3_0006 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shewana3_3735 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shewana3_3972 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shewana3_0053 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shewana3_3018 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shewana3_3728 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shewana3_3729 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shewana3_3730 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D Shewana3_1280 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:shn02020] D Shewana3_2878 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shewana3_2879 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Shewana3_3446 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3540 Peptidoglycan glycosyltransferase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3539 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3482 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Shewana3_2877 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shewana3_4026 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1723 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1724 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_4025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_4018 ATP-binding region, ATPase domain protein domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shewana3_4017 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Shewana3_2628 porin, Gram-negative type K09476 ompF; outer membrane pore protein F D Shewana3_0252 ATP-binding region, ATPase domain protein domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shewana3_0253 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shewana3_3307 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Shewana3_3337 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Shewana3_4295 multi-sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shewana3_4296 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Shewana3_4297 RND efflux system, outer membrane lipoprotein, NodT family K07796 cusC; outer membrane protein, copper/silver efflux system D Shewana3_4298 periplasmic copper-binding protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF D Shewana3_4299 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shewana3_3982 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shewana3_4300 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shewana3_3983 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shewana3_1886 ATP-binding region, ATPase domain protein domain protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Shewana3_1885 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB D Shewana3_1332 flagellin domain protein K02406 fliC; flagellin D Shewana3_1333 flagellin domain protein K02406 fliC; flagellin D Shewana3_1359 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA D Shewana3_2898 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shewana3_0059 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Shewana3_1053 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shewana3_1051 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Shewana3_1056 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shewana3_1055 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shewana3_1054 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shewana3_0650 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D Shewana3_3997 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shewana3_0009 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shewana3_1534 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D Shewana3_0293 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D Shewana3_0750 malic enzyme, NAD-binding K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Shewana3_0075 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shewana3_0074 transport protein, putative K09696 natB; sodium transport system permease protein D Shewana3_0657 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shewana3_0656 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D Shewana3_2089 formate dehydrogenase alpha subunit K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D Shewana3_0103 formate dehydrogenase beta subunit K08349 fdnH; formate dehydrogenase-N, beta subunit D Shewana3_1401 lipoprotein, putative K06080 rcsF; RcsF protein D Shewana3_1109 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shewana3_1608 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Shewana3_1130 carbon storage regulator, CsrA / carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Shewana3_1990 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Shewana3_3817 putative signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D Shewana3_3818 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR D Shewana3_2817 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Shewana3_3124 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Shewana3_4153 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Shewana3_0259 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shewana3_0258 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Shewana3_0300 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_3098 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_2982 short chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_1413 ATP-binding region, ATPase domain protein domain protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Shewana3_1412 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Shewana3_0672 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shewana3_0421 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA D Shewana3_1878 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit D Shewana3_2215 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shewana3_1320 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shewana3_1293 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0272 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0809 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1156 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0632 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0923 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0764 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0895 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1499 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1862 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2017 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2216 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2222 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2254 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3491 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3116 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3088 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3173 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3212 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3299 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3611 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2521 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3950 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3924 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3985 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0264 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2250 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0582 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_2987 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_1150 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_2217 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_1366 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_1367 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_2218 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_1362 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_2219 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_1360 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_2213 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_1363 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_2462 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1319 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1416 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Shewana3_1415 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Shewana3_1414 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Shewana3_0636 ATP-binding region, ATPase domain protein domain protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shewana3_3696 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shewana3_0637 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shewana3_3697 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shewana3_0633 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A D Shewana3_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B D Shewana3_0634 Polysulphide reductase, NrfD K08359 ttrC; tetrathionate reductase subunit C D Shewana3_1338 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shewana3_1339 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shewana3_1340 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shewana3_0617 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shewana3_1184 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shewana3_3708 ATP-binding region, ATPase domain protein domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shewana3_3707 response regulator receiver protein K15012 regA; two-component system, response regulator RegA D Shewana3_0601 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Shewana3_0602 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shewana3_0603 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Shewana3_2107 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Shewana3_2108 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Shewana3_2109 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Shewana3_2110 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Shewana3_0928 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shewana3_1241 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shewana3_0927 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shewana3_1242 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shewana3_1243 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D Shewana3_0725 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shewana3_1375 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shewana3_2010 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shewana3_2399 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Shewana3_2220 response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D Shewana3_2221 anti-sigma-factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D Shewana3_1317 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:shn04148] D Shewana3_3871 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shewana3_3682 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shewana3_0601 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:shn02024] D Shewana3_0936 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Shewana3_0597 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shewana3_1520 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shewana3_1519 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Shewana3_1734 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shewana3_3013 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shewana3_3528 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shewana3_1886 ATP-binding region, ATPase domain protein domain protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Shewana3_1885 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB D Shewana3_0059 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Shewana3_1282 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Shewana3_1283 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Shewana3_1284 putative conjugal transfer trbD transmembrane protein K20529 trbD; type IV secretion system protein TrbD D Shewana3_1285 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Shewana3_1286 putative conjugal transfer TrbJ signal peptide protein K20266 trbJ; type IV secretion system protein TrbJ D Shewana3_1288 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Shewana3_1289 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Shewana3_1290 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Shewana3_1291 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Shewana3_0382 putative outer membrane adhesin like proteiin K20276 bapA; large repetitive protein D Shewana3_0168 Ig family protein K20276 bapA; large repetitive protein D Shewana3_3231 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_0080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_2386 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_3814 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_0617 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shewana3_2600 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shewana3_1096 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shewana3_3799 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shewana3_3798 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shewana3_1994 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system D Shewana3_0006 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shewana3_1443 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shewana3_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shewana3_1027 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shewana3_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shewana3_1436 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shewana3_3735 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shewana3_3972 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shewana3_0053 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shewana3_3018 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:shn02030] D Shewana3_1293 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0272 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0809 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1156 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0632 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0923 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0764 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0895 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1499 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1862 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2017 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2216 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2222 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2254 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3491 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3116 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3088 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3173 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3212 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3299 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3611 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2521 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3950 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3924 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3985 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0264 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2250 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0582 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_2987 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_1150 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_0877 sugar-binding protein, putative K10439 rbsB; ribose transport system substrate-binding protein D Shewana3_2218 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_1362 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_2217 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_1366 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_1367 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_2219 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_1360 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_1361 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Shewana3_0715 putative chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D Shewana3_2213 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_1363 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_2462 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1319 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_2214 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Shewana3_2215 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shewana3_1320 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shewana3_1343 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shewana3_1349 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shewana3_1350 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shewana3_2898 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shewana3_2897 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:shn02040] D Shewana3_1341 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shewana3_1342 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shewana3_1343 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shewana3_1344 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shewana3_1345 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shewana3_1346 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Shewana3_1347 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shewana3_0126 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shewana3_1348 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shewana3_1349 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shewana3_1350 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shewana3_1351 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Shewana3_1352 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shewana3_1353 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shewana3_1354 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shewana3_1356 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shewana3_1355 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shewana3_1318 flagellar basal-body P-ring formation protein FlgA, putative K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shewana3_1321 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shewana3_1322 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shewana3_1323 basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D Shewana3_1324 GCN5-related N-acetyltransferase K02390 flgE; flagellar hook protein FlgE D Shewana3_1325 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shewana3_1326 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shewana3_1327 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D Shewana3_1328 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shewana3_1329 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Shewana3_1330 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shewana3_1331 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shewana3_1315 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP D Shewana3_0696 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shewana3_2539 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shewana3_1332 flagellin domain protein K02406 fliC; flagellin D Shewana3_1333 flagellin domain protein K02406 fliC; flagellin D Shewana3_1335 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shewana3_1337 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shewana3_2898 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shewana3_2897 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shewana3_1317 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Shewana3_1316 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Shewana3_3087 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Shewana3_1338 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shewana3_0672 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shewana3_1340 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shewana3_1359 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Shewana3_1116 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Shewana3_3282 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:shn01501] D Shewana3_2628 porin, Gram-negative type K09476 ompF; outer membrane pore protein F D Shewana3_0783 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Shewana3_2293 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Shewana3_1990 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Shewana3_0373 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D Shewana3_4046 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1992 secretion protein HlyD family protein K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1658 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_0372 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1704 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_2347 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_4045 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shewana3_1659 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_0371 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_1993 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_1994 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system D Shewana3_0725 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shewana3_3900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shewana3_0995 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shewana3_3749 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shewana3_3440 penicillin-binding protein, transpeptidase K18976 blaOXA-48; beta-lactamase class D OXA-48 [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:shn01502] D Shewana3_2307 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shewana3_0714 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shewana3_3747 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Shewana3_3746 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shewana3_3743 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:shn01503] D Shewana3_4026 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1723 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1724 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_4025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_2228 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shewana3_2650 Acetate kinase K19226 sapA; cationic peptide transport system substrate-binding protein D Shewana3_2651 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shewana3_2652 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shewana3_2653 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shewana3_2654 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein D Shewana3_0252 ATP-binding region, ATPase domain protein domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shewana3_0253 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shewana3_0594 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shewana3_3838 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shewana3_1573 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shewana3_0785 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shewana3_2936 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shewana3_4046 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1992 secretion protein HlyD family protein K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1658 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_0372 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1704 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_2347 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_4045 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shewana3_1659 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_0371 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_1993 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_0725 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shewana3_2803 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Shewana3_1534 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:shn01000] C 01001 Protein kinases [BR:shn01001] D Shewana3_0663 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Shewana3_1619 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Shewana3_2012 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Shewana3_2878 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shewana3_4026 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1723 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_4018 ATP-binding region, ATPase domain protein domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shewana3_0252 ATP-binding region, ATPase domain protein domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shewana3_4295 multi-sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shewana3_1886 ATP-binding region, ATPase domain protein domain protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Shewana3_1053 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shewana3_3185 ATP-binding region, ATPase domain protein domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shewana3_3308 ATP-binding region, ATPase domain protein domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shewana3_0657 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shewana3_1109 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shewana3_3817 putative signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D Shewana3_2593 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Shewana3_0259 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shewana3_1413 ATP-binding region, ATPase domain protein domain protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Shewana3_4075 ATP-binding region, ATPase domain protein domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Shewana3_2218 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_1362 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_0636 ATP-binding region, ATPase domain protein domain protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shewana3_3696 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shewana3_1339 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shewana3_3708 ATP-binding region, ATPase domain protein domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shewana3_0481 response regulator receiver protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D Shewana3_2015 putative PAS/PAC sensor protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:shn01009] D Shewana3_2443 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shewana3_1046 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:shn01002] D Shewana3_3135 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] D Shewana3_4320 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] D Shewana3_4152 Lipoprotein signal peptidase-like protein K03101 lspA; signal peptidase II [EC:3.4.23.36] D Shewana3_0417 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shewana3_1877 hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Shewana3_1236 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shewana3_0890 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shewana3_3099 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Shewana3_0063 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D Shewana3_1483 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Shewana3_3050 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shewana3_3113 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shewana3_4125 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shewana3_2549 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shewana3_2995 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Shewana3_2409 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS D Shewana3_1674 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shewana3_1889 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shewana3_2457 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D Shewana3_2876 response regulator receiver protein K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D Shewana3_0897 aminopeptidase N. Metallo peptidase. MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shewana3_1779 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shewana3_2156 peptidase M2, peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D Shewana3_4051 oligopeptidase A. Metallo peptidase. MEROPS family M03A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D Shewana3_2492 peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shewana3_1586 peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shewana3_1408 peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shewana3_2681 vibriolysin. Metallo peptidase. MEROPS family M04 K08604 hap; vibriolysin [EC:3.4.24.25] D Shewana3_0124 peptidase M6, immune inhibitor A K09607 ina; immune inhibitor A [EC:3.4.24.-] D Shewana3_0500 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Shewana3_0759 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Shewana3_0431 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Shewana3_3161 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shewana3_3588 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shewana3_0841 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shewana3_3940 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shewana3_3006 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shewana3_3324 peptidase M17, leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shewana3_0951 Dihydrofolate reductase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shewana3_3402 PepB aminopeptidase. Metallo peptidase. MEROPS family M17 K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D Shewana3_1912 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shewana3_2491 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shewana3_0950 Xaa-His dipeptidase. Metallo peptidase. MEROPS family M20C K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shewana3_0288 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D Shewana3_2610 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Shewana3_3230 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Shewana3_2816 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Shewana3_0025 Xaa-Pro dipeptidase. Metallo peptidase. MEROPS family M24B K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Shewana3_2986 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Shewana3_2999 peptidase M32, carboxypeptidase Taq metallopeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D Shewana3_1023 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Shewana3_2512 HtpX peptidase. Metallo peptidase. MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Shewana3_1649 peptidase M48, Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D Shewana3_2808 RseP peptidase. Metallo peptidase. MEROPS family M50B K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Shewana3_0439 conserved hypothetical protein K21429 impA; immunomodulating metalloprotease D Shewana3_1211 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase D Shewana3_0689 DegS. Serine peptidase. MEROPS family S01B K04691 hhoB; serine protease DegS [EC:3.4.21.-] D Shewana3_1443 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shewana3_2229 peptidase S9, prolyl oligopeptidase active site domain protein K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D Shewana3_2536 prolyl oligopeptidase. Serine peptidase. MEROPS family S09A K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D Shewana3_0649 dipeptidyl-peptidase IV. Serine peptidase. MEROPS family S09B K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shewana3_0135 oligopeptidase B. Serine peptidase. MEROPS family S09A K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D Shewana3_0991 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shewana3_3292 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D Shewana3_1985 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Shewana3_2661 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Shewana3_2659 Lon-A peptidase. Serine peptidase. MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Shewana3_1607 conserved hypothetical ATP-dependent protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D Shewana3_3989 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Shewana3_1833 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shewana3_4173 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shewana3_3027 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shewana3_1540 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shewana3_0312 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Shewana3_0049 C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Shewana3_1778 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Shewana3_1144 peptidase S41 K08676 tri; tricorn protease [EC:3.4.21.-] D Shewana3_1964 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D Shewana3_1530 sohB peptidase. Serine peptidase. MEROPS family S49 K04774 sohB; serine protease SohB [EC:3.4.21.-] D Shewana3_2513 alpha-aspartyl dipeptidase. Serine peptidase. MEROPS family S51 K05995 pepE; dipeptidase E [EC:3.4.13.21] D Shewana3_4107 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D Shewana3_3699 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Shewana3_1895 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shewana3_3514 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_2487 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shewana3_1068 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Shewana3_0800 peptidase U32 K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase D Shewana3_1064 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D Shewana3_1065 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D Shewana3_3631 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 K03592 pmbA; PmbA protein D Shewana3_3641 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 K03568 tldD; TldD protein D Shewana3_2000 proteinase inhibitor I11, ecotin K08276 eco; ecotin D Shewana3_0600 HflC protein K04087 hflC; modulator of FtsH protease HflC D Shewana3_0599 HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:shn01003] D Shewana3_2930 Starch synthase catalytic domain protein K00703 glgA; starch synthase [EC:2.4.1.21] D Shewana3_0858 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Shewana3_0623 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shewana3_3900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shewana3_1888 glycosyl transferase, family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:shn01005] D Shewana3_2803 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Shewana3_2802 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Shewana3_3738 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Shewana3_2805 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Shewana3_2666 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Shewana3_2583 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Shewana3_0848 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shewana3_1866 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D Shewana3_4102 Coproporphyrinogen oxidase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Shewana3_2228 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shewana3_4101 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D Shewana3_1908 DegT/DnrJ/EryC1/StrS aminotransferase K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109] D Shewana3_1907 iron-containing alcohol dehydrogenase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48] D Shewana3_0775 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Shewana3_1906 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Shewana3_0676 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Shewana3_0677 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Shewana3_4100 glycosyl transferase, family 9 K12982 opsX; heptosyltransferase I [EC:2.4.-.-] D Shewana3_1583 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Shewana3_0849 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:shn01011] D Shewana3_0684 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shewana3_0182 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shewana3_3742 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Shewana3_3745 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shewana3_3748 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shewana3_2307 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shewana3_0714 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shewana3_0180 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Shewana3_3746 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shewana3_3743 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Shewana3_3079 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shewana3_3721 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shewana3_3138 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Shewana3_3900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shewana3_0623 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shewana3_0995 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shewana3_3749 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shewana3_0991 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shewana3_1985 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Shewana3_3292 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D Shewana3_0858 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS D Shewana3_1674 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shewana3_1889 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shewana3_0063 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D Shewana3_2610 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Shewana3_0288 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D Shewana3_2409 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D Shewana3_2236 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Shewana3_0993 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shewana3_2459 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shewana3_2380 putative transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shewana3_2370 MLTD_N domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Shewana3_3584 MLTD_N domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Shewana3_1239 Lytic transglycosylase, catalytic K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D Shewana3_1765 Aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Shewana3_3104 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Shewana3_0992 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Shewana3_0594 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shewana3_0423 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] D Shewana3_3077 major outer membrane lipoprotein, putative K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:shn01004] D Shewana3_2559 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shewana3_2560 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shewana3_1581 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shewana3_0329 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shewana3_1475 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shewana3_2557 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shewana3_0326 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shewana3_2558 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_2765 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_0327 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shewana3_1606 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Shewana3_2804 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shewana3_2655 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shewana3_1537 lipolytic enzyme, G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shewana3_1688 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D Shewana3_0177 Delta-9 acyl-phospholipid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Shewana3_2523 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shewana3_1675 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Shewana3_3231 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_0080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_2386 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_3814 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_2475 succinate dehydrogenase, cytochrome b subunit K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Shewana3_3988 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shewana3_2561 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Shewana3_3082 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shewana3_0568 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:shn01008] C 01006 Prenyltransferases [BR:shn01006] D Shewana3_2900 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Shewana3_3220 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Shewana3_2811 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Shewana3_0596 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Shewana3_1686 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Shewana3_0470 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Shewana3_3998 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shewana3_4035 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:shn01007] D Shewana3_1418 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shewana3_2669 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shewana3_3405 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Shewana3_3058 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shewana3_3886 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shewana3_2664 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shewana3_3673 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shewana3_1760 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shewana3_3136 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shewana3_1131 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shewana3_1001 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shewana3_3296 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shewana3_1953 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shewana3_2306 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shewana3_1230 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shewana3_0017 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shewana3_0016 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shewana3_2054 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shewana3_1398 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shewana3_2043 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shewana3_1128 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shewana3_1863 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shewana3_1864 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shewana3_1974 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shewana3_2145 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shewana3_2121 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shewana3_1852 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shewana3_4104 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Shewana3_2518 aminotransferase, class I and II K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Shewana3_3106 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shewana3_0610 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shewana3_3091 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shewana3_2520 aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Shewana3_3071 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shewana3_3830 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shewana3_0360 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shewana3_1973 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:shn00194] D Shewana3_4129 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Shewana3_4130 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Shewana3_4131 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Shewana3_4132 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Shewana3_4133 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Shewana3_4134 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Shewana3_4135 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Shewana3_4136 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shewana3_4137 ATP synthase I chain K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:shn03000] D Shewana3_4194 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shewana3_4336 transcriptional regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D Shewana3_2691 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Shewana3_1420 Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shewana3_2894 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shewana3_0530 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shewana3_2614 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shewana3_0354 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D Shewana3_3470 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Shewana3_3036 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Shewana3_3046 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Shewana3_1652 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Shewana3_1731 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Shewana3_1106 transcriptional regulator, LysR family K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator D Shewana3_3930 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D Shewana3_0835 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Shewana3_2430 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D Shewana3_2403 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D Shewana3_2702 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D Shewana3_1896 putative signal transduction protein with CBS domains K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D Shewana3_3122 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Shewana3_0099 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Shewana3_1635 transcriptional regulator, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D Shewana3_0425 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Shewana3_4146 regulatory protein GntR, HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Shewana3_0373 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D Shewana3_3773 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D Shewana3_0292 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D Shewana3_0262 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Shewana3_2864 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Shewana3_1297 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shewana3_0178 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D Shewana3_0798 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Shewana3_2049 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shewana3_3959 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shewana3_3610 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Shewana3_3311 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Shewana3_1578 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Shewana3_4315 transcriptional regulator, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Shewana3_4341 transcriptional regulator, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Shewana3_4346 transcriptional regulator, MerR family K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Shewana3_4309 transcriptional regulator, MerR family K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Shewana3_2762 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Shewana3_0086 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Shewana3_0442 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D Shewana3_1716 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Shewana3_0617 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shewana3_2115 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Shewana3_2281 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Shewana3_0047 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Shewana3_0532 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Shewana3_2335 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Shewana3_2336 protein tyrosine phosphatase K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D Shewana3_3141 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D Shewana3_0029 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D Shewana3_0319 transcriptional regulator, XRE family K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D Shewana3_4356 transcriptional regulator, XRE family K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D Shewana3_2152 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D Shewana3_0183 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Shewana3_0398 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shewana3_1136 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D Shewana3_1338 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shewana3_0251 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Shewana3_1488 sigma54 specific transcriptional regulator, Fis family K12146 hyfR; hydrogenase-4 transcriptional activator D Shewana3_3227 DNA-binding protein Fis / transcriptional regulator, Fis family K12146 hyfR; hydrogenase-4 transcriptional activator D Shewana3_0845 transcriptional regulator, NifA subfamily, Fis family K12266 norR; anaerobic nitric oxide reductase transcription regulator D Shewana3_2682 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D Shewana3_0744 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Shewana3_4237 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Shewana3_1246 transcriptional regulator-like protein K07726 K07726; putative transcriptional regulator D Shewana3_0484 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Shewana3_2358 hypothetical protein K07727 K07727; putative transcriptional regulator D Shewana3_3615 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D Shewana3_0819 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shewana3_0934 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Shewana3_4138 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shewana3_4225 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shewana3_1374 transcription antitermination protein nusG K05785 rfaH; transcriptional antiterminator RfaH D Shewana3_3510 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D Shewana3_2779 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Shewana3_1655 glycine cleavage system transcriptional repressor, putative K03567 gcvR; glycine cleavage system transcriptional repressor D Shewana3_2649 transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator D Shewana3_2646 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shewana3_1714 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Shewana3_3781 hypothetical protein K07733 alpA; prophage regulatory protein D Shewana3_1661 negative transcriptional regulator K07734 paiB; transcriptional regulator D Shewana3_1200 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Shewana3_3404 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shewana3_1095 Ribonucleotide reductase regulator NrdR-like protein K07738 nrdR; transcriptional repressor NrdR D Shewana3_3752 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:shn03021] D Shewana3_0224 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shewana3_0192 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shewana3_0193 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shewana3_3811 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Shewana3_3087 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Shewana3_1124 RNA polymerase, sigma 38 subunit, RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D Shewana3_3032 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shewana3_0763 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shewana3_1453 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shewana3_2465 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shewana3_3152 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shewana3_3969 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor D Shewana3_0672 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shewana3_1359 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA D Shewana3_0574 SNF2-related protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D Shewana3_1029 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Shewana3_1100 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Shewana3_0187 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Shewana3_0604 Glutathione S-transferase, N-terminal domain protein K03599 sspA; stringent starvation protein A D Shewana3_0605 Stringent starvation protein B K03600 sspB; stringent starvation protein B D Shewana3_2013 response regulator receiver modulated serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Shewana3_2011 anti-sigma-factor antagonist K04749 rsbV; anti-sigma B factor antagonist D Shewana3_2012 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Shewana3_3031 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA D Shewana3_3030 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB D Shewana3_3029 positive regulator of sigma(E), RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D Shewana3_3404 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shewana3_1017 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Shewana3_4014 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D Shewana3_0408 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shewana3_3832 transcriptional antiterminator, Rof K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:shn03019] D Shewana3_2567 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Shewana3_3644 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Shewana3_3026 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shewana3_0697 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shewana3_0590 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Shewana3_0410 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:3.6.4.13] D Shewana3_0810 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_1422 4a-hydroxytetrahydrobiopterin dehydratase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_0962 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_1162 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_2988 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_2928 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_2376 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13] D Shewana3_3595 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13] D Shewana3_1999 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shewana3_3763 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shewana3_1116 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shewana3_1035 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Shewana3_0408 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shewana3_0959 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shewana3_3567 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shewana3_0597 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shewana3_2417 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Shewana3_3406 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Shewana3_3043 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Shewana3_1130 carbon storage regulator, CsrA / carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Shewana3_3668 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD D Shewana3_2373 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D Shewana3_3723 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D Shewana3_0569 protein of unknown function DUF1260 K09893 rraB; regulator of ribonuclease activity B D Shewana3_0669 Uncharacterized P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:shn03011] D Shewana3_1977 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Shewana3_2815 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Shewana3_0205 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Shewana3_0223 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Shewana3_0216 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Shewana3_0701 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Shewana3_0195 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Shewana3_0213 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Shewana3_0693 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Shewana3_0198 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Shewana3_0222 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Shewana3_0194 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Shewana3_0221 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Shewana3_0212 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Shewana3_1033 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Shewana3_3017 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Shewana3_0208 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Shewana3_0703 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Shewana3_0203 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Shewana3_3140 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Shewana3_3084 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Shewana3_0189 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Shewana3_0202 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Shewana3_0199 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Shewana3_0200 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Shewana3_0211 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Shewana3_0214 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Shewana3_0704 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Shewana3_0190 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Shewana3_0188 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Shewana3_0191 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Shewana3_0692 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Shewana3_0209 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Shewana3_0218 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Shewana3_0206 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Shewana3_0225 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Shewana3_0215 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Shewana3_3014 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Shewana3_2046 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Shewana3_3219 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Shewana3_0204 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Shewana3_0201 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Shewana3_0210 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Shewana3_3218 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Shewana3_3769 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Shewana3_0207 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Shewana3_0217 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Shewana3_3670 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Shewana3_2562 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Shewana3_3768 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Shewana3_2045 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Shewana3_0220 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Shewana3_1892 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Shewana3_R0073 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0118 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0132 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0141 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0128 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0069 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0143 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0072 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0119 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0142 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0133 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0129 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:shn03009] D Shewana3_3026 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shewana3_0663 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Shewana3_0590 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Shewana3_3025 GTP-binding protein Era K03595 era; GTPase D Shewana3_3217 DNA-directed DNA polymerase K03979 obgE; GTPase [EC:3.6.5.-] D Shewana3_3404 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shewana3_1029 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Shewana3_1100 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Shewana3_0187 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Shewana3_3175 Pseudouridine synthase, Rsu K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shewana3_0760 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shewana3_0916 Pseudouridine synthase, Rsu K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shewana3_3209 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Shewana3_0033 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shewana3_2867 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shewana3_2309 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Shewana3_3973 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Shewana3_3444 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Shewana3_1770 putative RNA methylase, NOL1/NOP2/sun family K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D Shewana3_0001 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Shewana3_3751 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Shewana3_3879 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Shewana3_4037 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D Shewana3_2570 Methyltransferase type 11 K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Shewana3_3078 ribosomal RNA large subunit methyltransferase A, putative K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Shewana3_0698 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Shewana3_1022 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Shewana3_0127 protein of unknown function DUF890 K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D Shewana3_0932 methyltransferase small K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D Shewana3_0996 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Shewana3_1545 conserved hypothetical protein 95 K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Shewana3_0977 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Shewana3_4038 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Shewana3_1601 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D Shewana3_2891 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D Shewana3_1226 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Shewana3_1110 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Shewana3_3309 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D Shewana3_0799 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_1430 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_0284 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_3712 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_1525 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Shewana3_2566 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Shewana3_3171 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Shewana3_1749 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Shewana3_0987 SSU ribosomal protein S18P alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Shewana3_0545 alpha-L-glutamate ligases, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Shewana3_2274 SSU ribosomal protein S6P modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Shewana3_3016 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Shewana3_3627 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Shewana3_3489 uncharacterized domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Shewana3_0400 LSU ribosomal protein L11P methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Shewana3_1468 modification methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D Shewana3_1744 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D Shewana3_2567 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Shewana3_3644 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Shewana3_1199 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Shewana3_3595 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13] D Shewana3_3384 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:3.6.4.13] D Shewana3_3336 DEAD/DEAH box helicase domain protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:3.6.4.13] D Shewana3_0589 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shewana3_1233 small GTP-binding protein K03977 engA; GTPase D Shewana3_2395 GTP-binding K14540 rbgA; ribosome biogenesis GTPase A D Shewana3_0598 GTP-binding protein, HSR1-related K03665 hflX; GTPase D Shewana3_0040 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shewana3_3812 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Shewana3_1031 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Shewana3_1028 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Shewana3_2616 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein D Shewana3_0997 iojap-like protein K09710 ybeB; ribosome-associated protein D Shewana3_1006 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Shewana3_1021 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein D Shewana3_2601 conserved hypothetical protein K14762 yibL; ribosome-associated protein D Shewana3_3632 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein D Shewana3_1605 ribosome modulation factor K03812 rmf; ribosome modulation factor D Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor D Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein K05809 raiA; ribosome-associated inhibitor A D Shewana3_1151 sigma 54 modulation protein / SSU ribosomal protein S30P K05809 raiA; ribosome-associated inhibitor A D Shewana3_1012 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Shewana3_2563 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:shn03016] D Shewana3_3984 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] D Shewana3_3076 metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Shewana3_1418 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shewana3_1398 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shewana3_3136 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shewana3_1001 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shewana3_1760 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shewana3_2669 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shewana3_3673 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shewana3_3296 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shewana3_1953 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shewana3_1128 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shewana3_2306 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shewana3_2043 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shewana3_2054 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shewana3_2664 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shewana3_1131 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shewana3_1230 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shewana3_1863 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shewana3_1864 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shewana3_3058 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shewana3_3886 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shewana3_0314 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Shewana3_2507 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Shewana3_1182 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Shewana3_1400 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Shewana3_1479 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Shewana3_1032 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Shewana3_1120 tRNA pseudouridine synthase D, TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Shewana3_2280 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shewana3_0040 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shewana3_0596 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Shewana3_0005 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Shewana3_0002 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Shewana3_0176 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Shewana3_2791 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shewana3_0170 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shewana3_0008 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Shewana3_R0137 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Shewana3_2540 RNAse T K03683 rnt; ribonuclease T [EC:3.1.13.-] D Shewana3_3777 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Shewana3_2385 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Shewana3_0619 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Shewana3_1093 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA D Shewana3_0017 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shewana3_0016 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shewana3_3405 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Shewana3_0957 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D Shewana3_1238 tRNA-adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Shewana3_0718 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Shewana3_0399 putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Shewana3_2452 dihydrouridine synthase, DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Shewana3_1951 putative methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Shewana3_1950 putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D Shewana3_0557 Methyltransferase type 11 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D Shewana3_0179 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D Shewana3_3015 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Shewana3_2283 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D Shewana3_1932 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D Shewana3_3934 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Shewana3_3333 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D Shewana3_2824 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D Shewana3_0799 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_1430 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_0284 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_3712 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shewana3_1747 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Shewana3_2117 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Shewana3_0021 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shewana3_1650 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shewana3_2057 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Shewana3_2058 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Shewana3_2059 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Shewana3_2056 Formate dehydrogenase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Shewana3_2278 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D Shewana3_3417 glycine cleavage T protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ D Shewana3_2667 tRNA hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D Shewana3_1474 FAD dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D Shewana3_1434 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Shewana3_2164 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Shewana3_2163 radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Shewana3_2835 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Shewana3_0745 putative iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Shewana3_0175 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Shewana3_1435 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Shewana3_2896 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shewana3_2799 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Shewana3_2391 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Shewana3_3083 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Shewana3_0593 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Shewana3_0735 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Shewana3_0697 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shewana3_1035 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:shn03012] D Shewana3_1201 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1 D Shewana3_1030 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Shewana3_2044 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Shewana3_3393 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Shewana3_2814 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Shewana3_0185 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shewana3_0197 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shewana3_3436 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shewana3_0196 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shewana3_0107 selenocysteine-specific translation elongation factor SelB K03833 selB; selenocysteine-specific elongation factor D Shewana3_0769 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1 D Shewana3_2812 ribosome recycling factor K02838 frr; ribosome recycling factor D Shewana3_0770 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Shewana3_1011 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Shewana3_1754 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1 D Shewana3_2141 translation elongation factor P (EF-P) K02356 efp; elongation factor P D Shewana3_3297 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2 D Shewana3_1037 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3 D Shewana3_3628 protein of unknown function DUF331 K09890 arfA; alternative ribosome-rescue factor D Shewana3_0512 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:shn03110] D Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Shewana3_3169 ATPase AAA-2 domain protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Shewana3_2660 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Shewana3_3700 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Shewana3_2443 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shewana3_0959 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shewana3_2276 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D Shewana3_2416 conserved hypothetical protein K04046 yegD; hypothetical chaperone protein D Shewana3_3567 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shewana3_0960 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Shewana3_3203 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein D Shewana3_2277 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Shewana3_0148 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Shewana3_2902 GrpE protein K03687 GRPE; molecular chaperone GrpE D Shewana3_2271 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA D Shewana3_0149 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D Shewana3_3568 chaperonin Cpn10 K04078 groES; chaperonin GroES D Shewana3_1023 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Shewana3_4136 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shewana3_0053 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shewana3_0254 protein of unknown function, Spy-related K06006 cpxP; periplasmic protein CpxP/Spy D Shewana3_0722 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Shewana3_1867 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Shewana3_1871 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D Shewana3_1054 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shewana3_1443 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shewana3_3115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Shewana3_0785 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shewana3_2936 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shewana3_2377 peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Shewana3_2665 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Shewana3_2657 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Shewana3_0491 FKBP-type peptidyl-prolyl isomerase domain protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Shewana3_0903 peptidylprolyl isomerase, FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Shewana3_0965 peptidylprolyl isomerase, FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Shewana3_3134 peptidylprolyl isomerase, FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D Shewana3_2458 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Shewana3_1138 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Shewana3_2618 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Shewana3_0624 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Shewana3_3207 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Shewana3_0409 thioredoxin K03671 TXN; thioredoxin D Shewana3_3546 hypothetical protein K03671 TXN; thioredoxin D Shewana3_0452 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D Shewana3_2442 Thioredoxin domain K05838 ybbN; putative thioredoxin D Shewana3_2525 Glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1 D Shewana3_4334 glutaredoxin K03676 grxC; glutaredoxin 3 D Shewana3_1640 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Shewana3_3838 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shewana3_1573 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shewana3_1633 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D Shewana3_3330 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Shewana3_3576 cytochrome c biogenesis protein, transmembrane region K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D Shewana3_0235 periplasmic protein thiol--disulphide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D Shewana3_4214 hypothetical protein K03805 dsbG; thiol:disulfide interchange protein DsbG C 04131 Membrane trafficking [BR:shn04131] D Shewana3_2272 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shewana3_2996 band 7 protein K07192 FLOT; flotillin D Shewana3_0909 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Shewana3_2343 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Shewana3_2122 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shewana3_2124 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shewana3_2153 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shewana3_2443 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:shn04121] C 03051 Proteasome [BR:shn03051] D Shewana3_2443 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:shn03032] D Shewana3_2366 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shewana3_4194 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shewana3_1615 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D Shewana3_2658 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shewana3_0547 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shewana3_1865 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shewana3_1978 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shewana3_0009 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shewana3_0713 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Shewana3_3086 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Shewana3_4229 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_3590 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_2800 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shewana3_0010 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shewana3_1132 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shewana3_0999 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shewana3_1767 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shewana3_2251 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2365 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_1577 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2446 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shewana3_2801 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shewana3_4109 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shewana3_1569 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shewana3_4167 site-binding protein, DNA replication region K10748 tus; DNA replication terminus site-binding protein D Shewana3_3891 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shewana3_2135 seqA protein K03645 seqA; negative modulator of initiation of replication D Shewana3_1643 regulatory inactivation of DnaA Hda protein K10763 hda; DnaA-homolog protein D Shewana3_1972 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Shewana3_0012 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Shewana3_0732 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shewana3_0730 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shewana3_1729 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shewana3_1486 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:shn03036] D Shewana3_4194 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shewana3_3026 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shewana3_2996 band 7 protein K07192 FLOT; flotillin D Shewana3_1404 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Shewana3_1615 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D Shewana3_2658 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shewana3_0547 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shewana3_1865 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shewana3_1978 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shewana3_0009 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shewana3_3882 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein D Shewana3_0985 Ferritin, Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Shewana3_0398 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shewana3_0597 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shewana3_1652 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Shewana3_2049 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shewana3_3959 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shewana3_2426 37kDa nucleoid-associated protein K06899 ndpA; nucleoid-associated protein D Shewana3_2097 bacterial condensin subunit MukB K03632 mukB; chromosome partition protein MukB D Shewana3_2096 Thioredoxin-disulfide reductase K03804 mukE; chromosome partition protein MukE D Shewana3_2095 hypothetical protein K03633 mukF; chromosome partition protein MukF D Shewana3_1567 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Shewana3_1523 condensin subunit ScpA K05896 scpA; segregation and condensation protein A D Shewana3_1524 condensin subunit ScpB K06024 scpB; segregation and condensation protein B D Shewana3_3740 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Shewana3_1117 cell division protein FtsB K05589 ftsB; cell division protein FtsB D Shewana3_3971 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shewana3_3749 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shewana3_2050 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Shewana3_3496 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Shewana3_3750 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Shewana3_3741 Polypeptide-transport-associated domain protein, FtsQ-type K03589 ftsQ; cell division protein FtsQ D Shewana3_3744 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Shewana3_3970 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Shewana3_3739 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shewana3_3943 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shewana3_1568 cell division protein ZipA K03528 zipA; cell division protein ZipA D Shewana3_3505 cell division protein ZapA K09888 zapA; cell division protein ZapA D Shewana3_3836 protein of unknown function DUF904 K09892 zapB; cell division protein ZapB D Shewana3_1787 protein of unknown function DUF1379 K18657 zapC; cell division protein ZapC D Shewana3_0415 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD D Shewana3_0691 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Shewana3_0839 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Shewana3_0594 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shewana3_4046 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1992 secretion protein HlyD family protein K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1658 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_0372 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1704 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_2347 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_2382 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Shewana3_2383 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Shewana3_2384 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Shewana3_3990 conserved hypothetical protein K13053 sulA; cell division inhibitor SulA D Shewana3_3773 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D Shewana3_2135 seqA protein K03645 seqA; negative modulator of initiation of replication D Shewana3_3648 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Shewana3_1860 rod shape-determining-related protein K03569 mreB; rod shape-determining protein MreB and related proteins D Shewana3_3647 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Shewana3_3646 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Shewana3_0994 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Shewana3_1264 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Shewana3_4139 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Shewana3_1365 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Shewana3_2590 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shewana3_1215 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shewana3_4138 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shewana3_4225 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shewana3_0732 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shewana3_0730 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shewana3_0002 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Shewana3_0001 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Shewana3_0393 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D Shewana3_3331 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Shewana3_1761 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning D Shewana3_2962 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Shewana3_4110 cell division checkpoint GTPase YihA K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:shn03400] D Shewana3_1421 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Shewana3_1166 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Shewana3_3221 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Shewana3_1181 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shewana3_0413 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Shewana3_0463 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Shewana3_3772 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Shewana3_2691 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Shewana3_3704 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D Shewana3_1420 Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shewana3_0018 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Shewana3_4084 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Shewana3_1503 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shewana3_1569 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shewana3_4109 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shewana3_3592 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Shewana3_2166 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Shewana3_1609 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Shewana3_0469 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shewana3_4204 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shewana3_0192 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shewana3_0193 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shewana3_0224 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shewana3_3811 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Shewana3_2289 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Shewana3_1125 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Shewana3_0595 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Shewana3_3044 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D Shewana3_2572 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Shewana3_1234 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Shewana3_2899 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Shewana3_2800 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shewana3_0010 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shewana3_1132 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shewana3_0999 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shewana3_1767 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shewana3_2251 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2365 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_1577 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shewana3_2446 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shewana3_4229 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_3590 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_3891 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shewana3_2246 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Shewana3_2245 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Shewana3_2247 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shewana3_2919 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shewana3_1126 recA protein K03553 recA; recombination protein RecA D Shewana3_1956 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Shewana3_1957 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Shewana3_1955 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Shewana3_3672 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Shewana3_0702 single-strand binding protein/Primosomal replication protein n K02686 priB; primosomal replication protein N D Shewana3_2632 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' D Shewana3_2611 exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50 D Shewana3_2612 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D Shewana3_1049 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Shewana3_0011 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Shewana3_0348 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shewana3_4215 helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shewana3_3024 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Shewana3_2444 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D Shewana3_1104 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Shewana3_2881 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC D Shewana3_2524 type III restriction enzyme, res subunit K19789 radD; DNA repair protein RadD D Shewana3_0459 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D Shewana3_1972 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Shewana3_0012 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Shewana3_1729 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shewana3_1615 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D Shewana3_2658 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shewana3_0547 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shewana3_4181 hypothetical protein K07455 recT; recombination protein RecT D Shewana3_4180 hypothetical protein K07455 recT; recombination protein RecT D Shewana3_0398 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shewana3_1865 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shewana3_1978 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shewana3_1999 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shewana3_3763 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shewana3_1404 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Shewana3_0949 UMUC domain protein DNA-repair protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Shewana3_4349 umuC protein K03502 umuC; DNA polymerase V D Shewana3_1832 UMUC domain protein DNA-repair protein K03502 umuC; DNA polymerase V D Shewana3_4172 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Shewana3_1833 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shewana3_4173 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shewana3_3989 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Shewana3_2629 DNA damage-inducible DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D Shewana3_1127 regulatory protein RecX K03565 recX; regulatory protein D Shewana3_0374 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Shewana3_2630 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Shewana3_1859 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Shewana3_1969 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shewana3_1968 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:shn03029] D Shewana3_0602 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shewana3_1030 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Shewana3_2044 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Shewana3_2814 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Shewana3_0185 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shewana3_0197 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shewana3_3436 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shewana3_0196 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shewana3_3025 GTP-binding protein Era K03595 era; GTPase D Shewana3_3058 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shewana3_1001 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shewana3_1953 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shewana3_3673 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shewana3_4229 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_3590 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shewana3_2807 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Shewana3_0959 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shewana3_2902 GrpE protein K03687 GRPE; molecular chaperone GrpE D Shewana3_3567 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shewana3_3568 chaperonin Cpn10 K04078 groES; chaperonin GroES D Shewana3_0960 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Shewana3_2280 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shewana3_2277 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Shewana3_1640 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Shewana3_1761 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning D Shewana3_3998 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shewana3_4035 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shewana3_3993 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Shewana3_3997 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shewana3_0006 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shewana3_3999 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Shewana3_2443 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:shn02000] D Shewana3_2584 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Shewana3_3526 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Shewana3_1419 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Shewana3_3232 lipid A ABC exporter family, fused ATPase and inner membrane subunits K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Shewana3_0381 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shewana3_0813 ABC transporter related K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Shewana3_0812 ABC transporter related K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D Shewana3_3455 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D Shewana3_1603 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein D Shewana3_3189 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Shewana3_3190 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Shewana3_3191 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Shewana3_3192 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Shewana3_0278 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shewana3_0743 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shewana3_0666 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shewana3_0742 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shewana3_0279 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shewana3_0741 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shewana3_0280 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shewana3_3547 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein D Shewana3_4077 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein D Shewana3_4078 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Shewana3_4079 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Shewana3_3517 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shewana3_3516 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shewana3_3515 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shewana3_3097 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Shewana3_3094 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein D Shewana3_3095 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Shewana3_3096 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Shewana3_0877 sugar-binding protein, putative K10439 rbsB; ribose transport system substrate-binding protein D Shewana3_2073 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein D Shewana3_2076 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein D Shewana3_2075 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein D Shewana3_2074 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D Shewana3_0680 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Shewana3_0679 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Shewana3_0678 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Shewana3_0681 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Shewana3_0682 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein D Shewana3_1213 extracellular solute-binding protein, family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Shewana3_2877 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shewana3_2734 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Shewana3_2733 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shewana3_2732 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shewana3_0882 extracellular solute-binding protein, family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Shewana3_0881 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Shewana3_0880 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Shewana3_2926 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_1085 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_0746 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_1074 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_2473 Succinate dehydrogenase (ubiquinone) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_0969 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_1143 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_0352 ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_3247 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_2993 ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_4072 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shewana3_2650 Acetate kinase K19226 sapA; cationic peptide transport system substrate-binding protein D Shewana3_2651 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shewana3_2652 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shewana3_2653 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shewana3_2654 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein D Shewana3_3239 periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein D Shewana3_3240 transport system permease protein K25133 hmuU; heme transport system permease protein D Shewana3_3241 ABC transporter related K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D Shewana3_3279 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Shewana3_3280 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Shewana3_3272 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Shewana3_4070 ABC transporter related K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Shewana3_0566 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D Shewana3_0567 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D Shewana3_3005 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Shewana3_3004 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Shewana3_0673 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Shewana3_0074 transport protein, putative K09696 natB; sodium transport system permease protein D Shewana3_0075 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shewana3_0498 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein D Shewana3_0497 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Shewana3_2287 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shewana3_2285 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shewana3_2286 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Shewana3_0228 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Shewana3_0229 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Shewana3_0230 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Shewana3_0231 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Shewana3_3970 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Shewana3_3971 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shewana3_0795 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shewana3_3638 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shewana3_3637 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Shewana3_1621 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Shewana3_2748 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shewana3_0078 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shewana3_1620 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shewana3_0794 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shewana3_2749 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shewana3_3422 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shewana3_1539 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shewana3_3259 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shewana3_3258 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shewana3_1538 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shewana3_3421 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shewana3_3260 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shewana3_0451 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Shewana3_2039 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Shewana3_4001 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shewana3_3485 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shewana3_3569 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shewana3_1699 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shewana3_2923 multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump D Shewana3_2310 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D Shewana3_3110 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D Shewana3_2696 major facilitator superfamily MFS_1 K02429 fucP; MFS transporter, FHS family, L-fucose permease D Shewana3_2860 major facilitator superfamily MFS_1 K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D Shewana3_1470 major facilitator superfamily MFS_1 K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D Shewana3_2329 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D Shewana3_0535 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D Shewana3_0783 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Shewana3_2204 drug resistance transporter, Bcr/CflA subfamily K18552 cmlA; MFS transporter, DHA1 family, chloramphenicol/florfenicol resistance protein D Shewana3_2268 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Shewana3_3948 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Shewana3_1989 major facilitator superfamily MFS_1 K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD D Shewana3_3587 major facilitator superfamily MFS_1 K08163 mdtL; MFS transporter, DHA1 family, multidrug resistance protein D Shewana3_3597 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Shewana3_1277 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Shewana3_0508 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Shewana3_0523 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Shewana3_2224 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Shewana3_2502 major facilitator superfamily MFS_1 K06141 tsgA; MFS transporter, TsgA protein D Shewana3_2257 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Shewana3_3042 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Shewana3_2256 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D Shewana3_0668 phosphocarrier, HPr family K08485 ptsO; phosphocarrier protein NPr D Shewana3_2258 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shewana3_2822 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D Shewana3_0670 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Shewana3_3064 MIP family channel proteins K06188 aqpZ; aquaporin Z D Shewana3_2419 Ion transport protein K10716 kch; voltage-gated potassium channel D Shewana3_0824 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Shewana3_0778 ammonium transporter K03320 amt; ammonium transporter, Amt family D Shewana3_3531 Rh family protein/ammonium transporter K03320 amt; ammonium transporter, Amt family D Shewana3_0755 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_4049 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_3519 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_0013 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_2262 Glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shewana3_0604 Glutathione S-transferase, N-terminal domain protein K03599 sspA; stringent starvation protein A D Shewana3_3555 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Shewana3_3153 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Shewana3_3556 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Shewana3_1455 Tetratricopeptide TPR_2 repeat protein K07114 yfbK; Ca-activated chloride channel homolog D Shewana3_1456 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Shewana3_2410 Vault protein inter-alpha-trypsin domain protein K07114 yfbK; Ca-activated chloride channel homolog D Shewana3_2060 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease D Shewana3_1556 Methionine gamma-lyase K06212 focA; formate transporter D Shewana3_0520 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Shewana3_0586 MscS Mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel D Shewana3_0561 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shewana3_1206 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shewana3_3684 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shewana3_0117 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel D Shewana3_0667 magnesium transporter K06213 mgtE; magnesium transporter D Shewana3_0971 magnesium transporter K06213 mgtE; magnesium transporter D Shewana3_2874 MgtE intracellular region K06213 mgtE; magnesium transporter D Shewana3_2898 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shewana3_2897 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shewana3_0696 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shewana3_2539 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shewana3_2625 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shewana3_2624 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shewana3_3237 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shewana3_2623 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Shewana3_2534 MotA/TolQ/ExbB proton channel K03562 tolQ; biopolymer transport protein TolQ D Shewana3_2533 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR D Shewana3_1720 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Shewana3_0654 Mg2 transporter protein, CorA family protein K16074 zntB; zinc transporter D Shewana3_2053 camphor resistance protein CrcB K06199 crcB; fluoride exporter D Shewana3_2968 mercuric transport protein MerT, putative K08363 merT; mercuric ion transport protein D Shewana3_4314 Mercuric transport protein MerT K08363 merT; mercuric ion transport protein D Shewana3_4342 Mercuric transport protein MerT K08363 merT; mercuric ion transport protein D Shewana3_4313 mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein D Shewana3_4343 mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein D Shewana3_2967 Heavy metal transport/detoxification protein K08364 merP; periplasmic mercuric ion binding protein D Shewana3_4344 MerC mercury resistance protein K19058 merC; mercuric ion transport protein D Shewana3_4312 MerC mercury resistance protein K19058 merC; mercuric ion transport protein D Shewana3_4347 MerE family protein K19059 merE; mercuric ion transport protein D Shewana3_1225 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shewana3_3020 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shewana3_0353 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shewana3_2628 porin, Gram-negative type K09476 ompF; outer membrane pore protein F D Shewana3_3146 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shewana3_1207 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shewana3_3757 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Shewana3_1450 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Shewana3_1040 nucleoside-specific channel-forming protein, Tsx K05517 tsx; nucleoside-specific channel-forming protein D Shewana3_0716 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D Shewana3_0937 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein D Shewana3_0952 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D Shewana3_1507 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D Shewana3_3929 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Shewana3_1861 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Shewana3_1513 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Shewana3_3235 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Shewana3_2862 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Shewana3_3472 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_2551 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_2627 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_3630 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_0983 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_1558 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_1914 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_4127 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_3383 TonB-dependent receptor, plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_3715 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_3121 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_3458 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_0299 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_0286 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_0754 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_1958 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_2944 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_2703 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_3923 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_2500 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_2085 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_2312 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shewana3_4386 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Shewana3_4156 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Shewana3_4297 RND efflux system, outer membrane lipoprotein, NodT family K07796 cusC; outer membrane protein, copper/silver efflux system D Shewana3_0725 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shewana3_0379 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Shewana3_1918 outer membrane efflux protein K18300 oprN; outer membrane protein, multidrug efflux system D Shewana3_1994 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system D Shewana3_1375 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shewana3_2010 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shewana3_2807 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Shewana3_1232 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Shewana3_1657 NlpBDapX family lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D Shewana3_3172 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D Shewana3_2949 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE D Shewana3_1894 surface antigen (D15) K07278 tamA; translocation and assembly module TamA D Shewana3_1893 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Shewana3_0674 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA D Shewana3_0675 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC D Shewana3_3206 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Shewana3_1000 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein D Shewana3_1005 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Shewana3_0885 LrgA family protein K06518 cidA; holin-like protein D Shewana3_1925 major facilitator superfamily MFS_1 K16211 malY; maltose/moltooligosaccharide transporter D Shewana3_3872 amino acid permease-associated region K03756 potE; putrescine:ornithine antiporter D Shewana3_3958 amino acid permease-associated region K16263 yjeH; amino acid efflux transporter D Shewana3_0255 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF D Shewana3_4154 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shewana3_4384 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shewana3_0518 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shewana3_4066 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shewana3_4300 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shewana3_3983 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shewana3_1078 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Shewana3_4045 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shewana3_1659 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_0371 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_1993 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_1676 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D Shewana3_3933 protein of unknown function DUF6, transmembrane K15269 pecM; probable blue pigment (indigoidine) exporter D Shewana3_3765 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Shewana3_3799 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shewana3_3798 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shewana3_2542 Na+/H+ antiporter NhaC K07084 yuiF; putative amino acid transporter D Shewana3_2684 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Shewana3_0293 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D Shewana3_2904 L-lactate permease K03303 lutP; lactate permease D Shewana3_2719 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein D Shewana3_3290 sodium/calcium exchanger membrane region K07300 chaA; Ca2+:H+ antiporter D Shewana3_3815 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Shewana3_0892 phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter D Shewana3_1451 sodium/proline symporter K11928 putP; sodium/proline symporter D Shewana3_1575 Na+/solute symporter K14393 actP; cation/acetate symporter D Shewana3_1426 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter D Shewana3_1541 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Shewana3_3038 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D Shewana3_1634 Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family D Shewana3_1407 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shewana3_3835 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shewana3_2144 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shewana3_0847 sodium/hydrogen exchanger K11105 cvrA; potassium/hydrogen antiporter D Shewana3_3008 methyl-accepting chemotaxis sensory transducer K03316 nhaP; Na+:H+ antiporter D Shewana3_2945 potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D Shewana3_2797 potassium efflux system protein K03455 KEA1_2_3; K+:H+ antiporter D Shewana3_0057 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Shewana3_0027 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Shewana3_0031 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Shewana3_0058 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Shewana3_0032 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Shewana3_1641 uracil-xanthine permease K02824 uraA; uracil permease D Shewana3_1058 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shewana3_0953 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shewana3_1846 aromatic amino acid transporter K03834 tyrP; tyrosine-specific transport protein D Shewana3_0912 aromatic amino acid permease K03834 tyrP; tyrosine-specific transport protein D Shewana3_3987 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein D Shewana3_3365 serine transporter, putative K03837 sdaC; serine transporter D Shewana3_2970 putative HAAAP family transport protein K26604 cyuP; cysteine uptake transport protein D Shewana3_0320 benzoate transporter K05782 benE; benzoate membrane transport protein D Shewana3_3069 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Shewana3_3300 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Shewana3_4365 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Shewana3_3154 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D Shewana3_2568 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Shewana3_1416 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Shewana3_1415 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Shewana3_1414 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Shewana3_2343 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Shewana3_2344 arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein D Shewana3_0533 Bile acid:sodium symporter K03325 ACR3; arsenite transporter D Shewana3_3138 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Shewana3_1105 transporter, putative K13936 mdcF; malonate transporter and related proteins D Shewana3_1759 conserved hypothetical protein K13936 mdcF; malonate transporter and related proteins D Shewana3_1653 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO D Shewana3_2485 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Shewana3_0118 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Shewana3_3536 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shewana3_3224 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shewana3_0531 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shewana3_2694 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Shewana3_2695 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Shewana3_1651 protein of unknown function UPF0118 K03548 perM; putative permease D Shewana3_4073 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Shewana3_1789 multiple antibiotic resistance (MarC)-related proteins K05595 marC; multiple antibiotic resistance protein D Shewana3_3744 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Shewana3_0909 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Shewana3_3236 TonB family protein K03832 tonB; periplasmic protein TonB D Shewana3_3957 TonB family protein K03832 tonB; periplasmic protein TonB D Shewana3_2622 TonB family protein K03832 tonB; periplasmic protein TonB D Shewana3_2530 OmpA/MotB domain protein K03640 pal; peptidoglycan-associated lipoprotein D Shewana3_4277 OmpA/MotB domain protein K03640 pal; peptidoglycan-associated lipoprotein D Shewana3_2532 TolA family protein K03646 tolA; colicin import membrane protein D Shewana3_2531 TolB, N-terminal domain protein K03641 tolB; TolB protein D Shewana3_3164 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shewana3_3165 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Shewana3_3166 sodium pump decarboxylases, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Shewana3_2348 cytochrome c biogenesis protein, transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Shewana3_2089 formate dehydrogenase alpha subunit K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D Shewana3_0103 formate dehydrogenase beta subunit K08349 fdnH; formate dehydrogenase-N, beta subunit D Shewana3_1055 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shewana3_1056 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shewana3_1054 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shewana3_3619 molybdopterin oxidoreductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shewana3_3618 4Fe-4S ferredoxin, iron-sulfur binding domain protein K16293 psrB; polysulfide reductase chain B D Shewana3_3617 Polysulphide reductase, NrfD K16294 psrC; polysulfide reductase chain C D Shewana3_0633 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A D Shewana3_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B D Shewana3_0634 Polysulphide reductase, NrfD K08359 ttrC; tetrathionate reductase subunit C D Shewana3_0522 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Shewana3_2225 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Shewana3_4155 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Shewana3_4385 secretion protein HlyD K15727 czcB; membrane fusion protein, heavy metal efflux system D Shewana3_4299 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shewana3_3982 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shewana3_0380 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shewana3_1077 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system D Shewana3_4046 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1992 secretion protein HlyD family protein K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1658 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_0372 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1704 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_2347 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1447 efflux transporter, RND family, MFP subunit K21136 triA; membrane fusion protein, multidrug efflux system D Shewana3_1916 putative efflux protein K21137 triB; membrane fusion protein, multidrug efflux system D Shewana3_3337 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Shewana3_3456 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D Shewana3_2498 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D Shewana3_2671 FeoA family protein K04758 feoA; ferrous iron transport protein A D Shewana3_2670 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Shewana3_0488 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Shewana3_0234 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Shewana3_4290 copper resistance D domain protein K07245 pcoD; copper resistance protein D D Shewana3_4289 copper resistance protein CopC K07156 copC; copper resistance protein C D Shewana3_3182 MltA-interacting MipA family protein K07274 mipA; MipA family protein D Shewana3_3305 MltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:shn02044] D Shewana3_0725 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shewana3_0381 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shewana3_0380 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shewana3_0379 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Shewana3_3075 Peptidoglycan-binding domain 1 protein K02450 gspA; general secretion pathway protein A D Shewana3_3074 general secretion pathway protein B K02451 gspB; general secretion pathway protein B D Shewana3_0150 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D Shewana3_0151 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Shewana3_0152 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Shewana3_0153 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Shewana3_0154 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Shewana3_0155 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Shewana3_0156 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Shewana3_0157 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Shewana3_0158 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Shewana3_0159 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Shewana3_0160 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Shewana3_0161 type II secretion system protein N K02463 gspN; general secretion pathway protein N D Shewana3_0417 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shewana3_0421 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA D Shewana3_0419 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Shewana3_0418 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Shewana3_3128 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE D Shewana3_3424 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE D Shewana3_1227 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Shewana3_3899 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Shewana3_3898 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Shewana3_3897 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO D Shewana3_3896 methyl-accepting chemotaxis sensory transducer K02665 pilP; type IV pilus assembly protein PilP D Shewana3_3895 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Shewana3_1195 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT D Shewana3_1196 twitching motility protein K02670 pilU; twitching motility protein PilU D Shewana3_3132 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Shewana3_3426 Prepilin-type cleavage/methylation-like protein K02671 pilV; type IV pilus assembly protein PilV D Shewana3_3131 Prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D Shewana3_3130 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D Shewana3_3129 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shewana3_1087 Undecaprenol kinase., rRNA (guanine-N(1)-)-methyltransferase K02674 pilY1; type IV pilus assembly protein PilY1 D Shewana3_1768 type IV pilus biogenesis protein pilZ K02676 pilZ; type IV pilus assembly protein PilZ D Shewana3_3125 methylation site containing protein K08084 fimT; type IV fimbrial biogenesis protein FimT D Shewana3_3126 methylation site containing protein K08085 fimU; type IV fimbrial biogenesis protein FimU D Shewana3_1478 putative membrane protein K08086 fimV; pilus assembly protein FimV D Shewana3_3656 methylation site containing protein K10924 mshA; MSHA pilin protein MshA D Shewana3_1003 methylation site containing protein K10924 mshA; MSHA pilin protein MshA D Shewana3_3657 methylation site containing protein K10925 mshB; MSHA pilin protein MshB D Shewana3_3653 methylation site containing protein K10926 mshC; MSHA pilin protein MshC D Shewana3_3652 methylation site containing protein K10927 mshD; MSHA pilin protein MshD D Shewana3_3660 type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE D Shewana3_3659 type II secretion system protein K12278 mshG; MSHA biogenesis protein MshG D Shewana3_3667 conserved hypothetical biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI D Shewana3_3665 MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ D Shewana3_3664 MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK D Shewana3_3663 pilus (MSHA type) biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL D Shewana3_3662 MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM D Shewana3_3661 Tetratricopeptide TPR_2 repeat protein K12284 mshN; MSHA biogenesis protein MshN D Shewana3_3651 methylation site containing protein K12285 mshO; MSHA biogenesis protein MshO D Shewana3_3650 MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP D Shewana3_3649 MSHA biogenesis protein MshQ K12287 mshQ; MSHA biogenesis protein MshQ D Shewana3_1192 protein of unknown function YGGT K02221 yggT; YggT family protein D Shewana3_2642 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Shewana3_2585 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Shewana3_1356 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shewana3_1355 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shewana3_1369 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein D Shewana3_1342 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shewana3_1344 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shewana3_1345 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shewana3_1350 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shewana3_1351 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Shewana3_1352 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shewana3_1353 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shewana3_1354 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shewana3_1280 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Shewana3_4270 hypothetical protein K12057 traF; conjugal transfer pilus assembly protein TraF D Shewana3_4206 hypothetical protein K12058 traN; conjugal transfer mating pair stabilization protein TraN D Shewana3_4207 TraU family protein K12060 traU; conjugal transfer pilus assembly protein TraU D Shewana3_4209 Type IV secretory pathway protease TraF-like protein K12062 trbI; conjugal transfer pilin signal peptidase TrbI D Shewana3_4218 Type IV secretory pathway VirB4 components-like protein K12063 traC; conjugal transfer ATP-binding protein TraC D Shewana3_4219 hypothetical protein K12064 traV; conjugal transfer pilus assembly protein TraV D Shewana3_4258 TraB pilus assembly family protein K12065 traB; conjugal transfer pilus assembly protein TraB D Shewana3_4259 putative periplasmic protein K12066 traK; conjugal transfer pilus assembly protein TraK D Shewana3_4260 hypothetical protein K12067 traE; conjugal transfer pilus assembly protein TraE D Shewana3_4265 Relaxase K12070 traI; conjugal transfer pilus assembly protein TraI D Shewana3_4264 hypothetical protein K12071 traD; conjugal transfer pilus assembly protein TraD D Shewana3_3330 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Shewana3_4271 hypothetical protein K12072 traH; conjugative transfer pilus assembly protein TraH D Shewana3_1282 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Shewana3_1283 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Shewana3_1284 putative conjugal transfer trbD transmembrane protein K20529 trbD; type IV secretion system protein TrbD D Shewana3_1285 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Shewana3_1289 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Shewana3_1290 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Shewana3_1291 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Shewana3_1286 putative conjugal transfer TrbJ signal peptide protein K20266 trbJ; type IV secretion system protein TrbJ D Shewana3_1288 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Shewana3_3412 Curlin associated repeat protein K04335 csgB; minor curlin subunit D Shewana3_3255 curli production assembly/transport component CsgE, putative K04337 csgE; curli production assembly/transport component CsgE D Shewana3_3254 curli production assembly/transport component CsgF, putative K04338 csgF; curli production assembly/transport component CsgF D Shewana3_3253 Curli production assembly/transport component CsgG K06214 csgG; curli production assembly/transport component CsgG D Shewana3_3735 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shewana3_0053 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shewana3_1019 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shewana3_1437 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shewana3_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shewana3_1438 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Shewana3_1020 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shewana3_1027 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shewana3_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shewana3_3018 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shewana3_3972 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shewana3_1436 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shewana3_0006 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shewana3_3728 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shewana3_3729 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shewana3_3730 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:shn02042] D Shewana3_1559 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B D Shewana3_1225 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shewana3_3020 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shewana3_0353 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shewana3_1934 channel protein, hemolysin III family K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:shn02022] D Shewana3_2878 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shewana3_2879 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Shewana3_4026 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1723 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1724 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_4025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_4018 ATP-binding region, ATPase domain protein domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shewana3_4017 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Shewana3_3307 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Shewana3_0252 ATP-binding region, ATPase domain protein domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shewana3_0253 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shewana3_4295 multi-sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shewana3_4296 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Shewana3_1886 ATP-binding region, ATPase domain protein domain protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Shewana3_1885 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB D Shewana3_0059 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Shewana3_1053 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shewana3_1051 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Shewana3_0650 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D Shewana3_3185 ATP-binding region, ATPase domain protein domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shewana3_3308 ATP-binding region, ATPase domain protein domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shewana3_3184 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shewana3_0282 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shewana3_1959 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shewana3_2412 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shewana3_0241 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shewana3_0615 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shewana3_0657 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shewana3_0656 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D Shewana3_1109 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shewana3_1608 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Shewana3_3817 putative signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D Shewana3_3818 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR D Shewana3_2593 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Shewana3_2594 response regulator receiver protein K02477 K02477; two-component system, LytTR family, response regulator D Shewana3_0259 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shewana3_0258 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Shewana3_1413 ATP-binding region, ATPase domain protein domain protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Shewana3_1412 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Shewana3_4075 ATP-binding region, ATPase domain protein domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Shewana3_2218 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_1362 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_2219 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_1360 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_2213 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_1363 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_2462 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1319 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_0636 ATP-binding region, ATPase domain protein domain protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shewana3_3696 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shewana3_0637 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shewana3_3697 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shewana3_1339 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shewana3_1340 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shewana3_3708 ATP-binding region, ATPase domain protein domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shewana3_3707 response regulator receiver protein K15012 regA; two-component system, response regulator RegA D Shewana3_2220 response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D Shewana3_0481 response regulator receiver protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D Shewana3_2015 putative PAS/PAC sensor protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:shn02035] D Shewana3_2218 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_1362 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shewana3_2217 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_1366 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_1367 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shewana3_0715 putative chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D Shewana3_2214 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Shewana3_2215 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shewana3_1320 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shewana3_2213 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_1363 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shewana3_2219 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_1360 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shewana3_1361 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Shewana3_2462 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1319 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shewana3_1293 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0272 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0809 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1156 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0632 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0923 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0764 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0895 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1499 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_1862 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2017 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2216 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2222 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2254 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3491 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3116 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3088 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3173 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3212 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3299 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3611 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2521 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3950 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3924 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_3985 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0264 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_2250 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shewana3_0582 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_2987 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_1150 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shewana3_1344 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shewana3_1345 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shewana3_1346 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Shewana3_1351 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Shewana3_1352 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shewana3_1353 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shewana3_1354 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shewana3_1356 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shewana3_1355 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shewana3_1343 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shewana3_1349 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shewana3_1350 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shewana3_1342 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shewana3_1328 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shewana3_1318 flagellar basal-body P-ring formation protein FlgA, putative K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shewana3_1327 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D Shewana3_0126 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shewana3_1348 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shewana3_1341 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shewana3_1347 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shewana3_1321 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shewana3_1322 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shewana3_1323 basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D Shewana3_1325 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shewana3_1326 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shewana3_1329 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Shewana3_1324 GCN5-related N-acetyltransferase K02390 flgE; flagellar hook protein FlgE D Shewana3_1330 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shewana3_1331 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shewana3_1316 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Shewana3_1315 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP D Shewana3_0696 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shewana3_2539 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shewana3_1332 flagellin domain protein K02406 fliC; flagellin D Shewana3_1333 flagellin domain protein K02406 fliC; flagellin D Shewana3_1335 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shewana3_1337 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shewana3_1359 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA D Shewana3_2898 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shewana3_2897 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shewana3_1338 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shewana3_1339 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shewana3_1340 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shewana3_1317 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Shewana3_1334 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG D Shewana3_1357 GTP-binding signal recognition particle SRP54, G-domain K02404 flhF; flagellar biosynthesis protein FlhF D Shewana3_1358 Cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Shewana3_1195 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT D Shewana3_1196 twitching motility protein K02670 pilU; twitching motility protein PilU D Shewana3_0421 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA D Shewana3_0419 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Shewana3_0418 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Shewana3_0417 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shewana3_1227 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Shewana3_3895 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Shewana3_3896 methyl-accepting chemotaxis sensory transducer K02665 pilP; type IV pilus assembly protein PilP D Shewana3_3897 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO D Shewana3_3898 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Shewana3_3899 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Shewana3_1768 type IV pilus biogenesis protein pilZ K02676 pilZ; type IV pilus assembly protein PilZ D Shewana3_3132 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Shewana3_3426 Prepilin-type cleavage/methylation-like protein K02671 pilV; type IV pilus assembly protein PilV D Shewana3_3131 Prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D Shewana3_3130 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D Shewana3_3129 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shewana3_1087 Undecaprenol kinase., rRNA (guanine-N(1)-)-methyltransferase K02674 pilY1; type IV pilus assembly protein PilY1 D Shewana3_3128 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE D Shewana3_3424 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:shn04812] D Shewana3_3648 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Shewana3_1860 rod shape-determining-related protein K03569 mreB; rod shape-determining protein MreB and related proteins D Shewana3_4268 hypothetical protein K18640 parM; plasmid segregation protein ParM D Shewana3_3739 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shewana3_3943 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shewana3_3740 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Shewana3_2382 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Shewana3_2383 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Shewana3_2384 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Shewana3_1264 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Shewana3_4139 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Shewana3_1365 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Shewana3_2590 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shewana3_1215 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shewana3_4138 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shewana3_4225 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:shn04147] D Shewana3_2443 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shewana3_1116 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shewana3_2122 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shewana3_2124 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shewana3_3351 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shewana3_2153 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shewana3_0785 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shewana3_2936 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shewana3_2541 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Shewana3_2996 band 7 protein K07192 FLOT; flotillin D Shewana3_3567 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shewana3_0959 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shewana3_3148 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shewana3_0649 dipeptidyl-peptidase IV. Serine peptidase. MEROPS family S09B K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shewana3_1235 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Shewana3_0185 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shewana3_0197 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shewana3_2507 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Shewana3_3231 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_0080 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_2386 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_3814 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shewana3_2771 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shewana3_2156 peptidase M2, peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D Shewana3_2441 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shewana3_2447 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shewana3_3901 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shewana3_3902 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shewana3_0648 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shewana3_3578 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shewana3_2934 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Shewana3_3756 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Shewana3_0300 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_3098 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shewana3_2339 glutathione synthase K21456 GSS; glutathione synthase [EC:6.3.2.3] D Shewana3_2392 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shewana3_3734 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shewana3_2780 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Shewana3_3446 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3540 Peptidoglycan glycosyltransferase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3539 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3416 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shewana3_0441 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shewana3_0428 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shewana3_1406 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Shewana3_2151 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shewana3_1026 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:shn02048] D Shewana3_3854 hypothetical protein K19128 csy2; CRISPR-associated protein Csy2 D Shewana3_3853 CRISPR-associated protein, Csy3 family K19129 csy3; CRISPR-associated protein Csy3 D Shewana3_3852 CRISPR-associated protein, Csy4 family K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D Shewana3_2963 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Shewana3_4244 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Shewana3_4164 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Shewana3_2026 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Shewana3_3790 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Shewana3_2960 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Shewana3_4163 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Shewana3_4241 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Shewana3_3793 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Shewana3_2028 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Shewana3_2961 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Shewana3_4162 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Shewana3_4240 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Shewana3_2027 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Shewana3_3794 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Shewana3_4140 conserved hypothetical protein K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] D Shewana3_3891 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shewana3_4194 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shewana3_3795 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Shewana3_2957 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Shewana3_2103 restriction endonuclease K07448 mrr; restriction system protein D Shewana3_2646 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shewana3_2647 phage shock B family protein K03970 pspB; phage shock protein B D Shewana3_3739 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shewana3_3943 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shewana3_3648 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Shewana3_1860 rod shape-determining-related protein K03569 mreB; rod shape-determining protein MreB and related proteins D Shewana3_0732 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shewana3_0730 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shewana3_1418 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shewana3_1802 YagBYeeUYfjZ family protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins D Shewana3_3034 conserved hypothetical protein K19168 cptA; toxin CptA D Shewana3_3035 protein of unknown function DUF339 K09159 cptB; antitoxin CptB D Shewana3_2280 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shewana3_4362 phosphoadenosine phosphosulfate reductase K19170 dndC; DNA sulfur modification protein DndC C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:shn04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:shn04090] D Shewana3_0649 dipeptidyl-peptidase IV. Serine peptidase. MEROPS family S09B K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shewana3_2156 peptidase M2, peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] C 01504 Antimicrobial resistance genes [BR:shn01504] D Shewana3_3440 penicillin-binding protein, transpeptidase K18976 blaOXA-48; beta-lactamase class D OXA-48 [EC:3.5.2.6] D Shewana3_1407 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shewana3_3835 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shewana3_2144 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shewana3_2692 streptogramin A acetyl transferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D Shewana3_2204 drug resistance transporter, Bcr/CflA subfamily K18552 cmlA; MFS transporter, DHA1 family, chloramphenicol/florfenicol resistance protein D Shewana3_0322 antibiotic acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D Shewana3_3620 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein D Shewana3_4295 multi-sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shewana3_4296 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Shewana3_1534 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D Shewana3_4026 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1723 ATP-binding region, ATPase domain protein domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shewana3_1724 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_4025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shewana3_4046 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1992 secretion protein HlyD family protein K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1658 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_0372 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1704 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_2347 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shewana3_4045 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shewana3_1659 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_0371 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_1993 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shewana3_1994 outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system D Shewana3_1077 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system D Shewana3_1078 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Shewana3_1918 outer membrane efflux protein K18300 oprN; outer membrane protein, multidrug efflux system D Shewana3_1297 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shewana3_2762 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Shewana3_0086 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Shewana3_0725 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shewana3_2628 porin, Gram-negative type K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:shn00537] D Shewana3_3446 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3540 Peptidoglycan glycosyltransferase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shewana3_3539 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:shn03100] D Shewana3_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0134 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shewana3_R0020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0053 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0113 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0048 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shewana3_R0095 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0098 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0099 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0096 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0097 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shewana3_R0004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0101 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0100 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0019 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shewana3_R0080 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shewana3_R0090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shewana3_R0033 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shewana3_R0037 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shewana3_R0034 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shewana3_R0061 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0067 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0066 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shewana3_R0024 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0025 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0027 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0079 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0026 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0091 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0014 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shewana3_R0021 tRNA-His K14226 tRNA-His; tRNA His D Shewana3_R0112 tRNA-His K14226 tRNA-His; tRNA His D Shewana3_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shewana3_R0135 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shewana3_R0070 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shewana3_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0032 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0028 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0122 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0123 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0081 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0089 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0082 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shewana3_R0104 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0108 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0105 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0110 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0106 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0109 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0107 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shewana3_R0031 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0035 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0117 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0039 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0074 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0075 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0076 tRNA-Met K14230 tRNA-Met; tRNA Met D Shewana3_R0050 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shewana3_R0052 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shewana3_R0121 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shewana3_R0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0114 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0023 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0102 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shewana3_R0077 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0078 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0088 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0041 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0047 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0083 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shewana3_R0131 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0049 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0051 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shewana3_R0030 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shewana3_R0013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0092 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0094 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0093 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shewana3_R0054 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0058 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0056 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0055 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0059 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0085 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0086 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0087 tRNA-Val K14237 tRNA-Val; tRNA Val D Shewana3_R0005 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Shewana3_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0069 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0143 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shewana3_R0072 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0119 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0142 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0133 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0129 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shewana3_R0073 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0118 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0132 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0141 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0128 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shewana3_R0111 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Shewana3_R0137 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Shewana3_R0116 ssrA; prediction based on tmRNA website at Indiana University K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Shewana3_3599 aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D Shewana3_2712 3-beta hydroxysteroid dehydrogenase/isomerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412] D Shewana3_3251 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D Shewana3_2330 glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D Shewana3_0534 glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D Shewana3_1965 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D Shewana3_1496 (2Fe-2S)-binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D Shewana3_1497 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D Shewana3_0273 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Shewana3_3581 response regulator receiver protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Shewana3_3177 NADPH-dependent FMN reductase K03206 azr; azobenzene reductase [EC:1.7.1.6] D Shewana3_0316 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Shewana3_3326 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D Shewana3_3606 cytochrome c family protein K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D Shewana3_2133 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Shewana3_4324 Methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Shewana3_4325 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Shewana3_4335 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Shewana3_4331 Methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Shewana3_2393 peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D Shewana3_4333 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Shewana3_4326 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Shewana3_2866 Glutathione S-transferase, N-terminal domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Shewana3_2234 oxidoreductase, molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Shewana3_2425 Di-haem cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Shewana3_1654 Redoxin domain protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Shewana3_1205 thiol peroxidase (atypical 2-Cys peroxiredoxin) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Shewana3_3325 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D Shewana3_3312 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Shewana3_3513 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D Shewana3_1879 nickel-dependent hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1] D Shewana3_1880 hydrogenase (NiFe) small subunit HydA K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1] D Shewana3_0711 response regulator receiver protein K00533 E1.12.7.2L; ferredoxin hydrogenase large subunit [EC:1.12.7.2] D Shewana3_0710 iron hydrogenase, small subunit K00534 E1.12.7.2S; ferredoxin hydrogenase small subunit [EC:1.12.7.2] D Shewana3_1221 Pirin domain protein domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Shewana3_3385 Hypoxanthine phosphoribosyltransferase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Shewana3_0061 Pirin domain protein domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Shewana3_0717 2OG-Fe(II) oxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D Shewana3_3174 globin K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D Shewana3_4311 mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1] D Shewana3_4345 mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1] D Shewana3_0132 Ferritin, Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2] D Shewana3_3520 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Shewana3_1648 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Shewana3_2345 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Shewana3_2334 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Shewana3_2602 ribonucleoside-triphosphate reductase class III activase subunit K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D Shewana3_1554 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shewana3_3010 Oxidoreductase FAD-binding domain protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D Shewana3_1122 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Shewana3_1171 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Shewana3_3926 Radical SAM domain protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350] D Shewana3_2484 transferase hexapeptide repeat containing protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D Shewana3_1563 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207] D Shewana3_1004 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Shewana3_3368 transcriptional regulator, MarR family with acetyltransferase activity K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D Shewana3_0321 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D Shewana3_1220 Acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D Shewana3_1219 Acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D Shewana3_1756 Exopolyphosphatase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Shewana3_2244 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D Shewana3_1755 Arginine-tRNA-protein transferase, C-terminal domain protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D Shewana3_2715 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D Shewana3_1991 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shewana3_3947 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shewana3_3040 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Shewana3_0921 ApbE family protein, putative K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shewana3_1884 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shewana3_0944 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shewana3_1735 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Shewana3_0832 glutamate-ammonia ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Shewana3_3841 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Shewana3_0578 serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1] D Shewana3_3842 hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Shewana3_0082 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shewana3_0085 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shewana3_2535 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shewana3_0334 conserved hypothetical 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shewana3_1071 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shewana3_1521 PHP C-terminal domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Shewana3_1466 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Shewana3_0777 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D Shewana3_0479 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shewana3_3334 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shewana3_3418 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shewana3_4069 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shewana3_3443 Endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D Shewana3_4247 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shewana3_1038 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shewana3_1769 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shewana3_3732 Sec-independent protein translocase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shewana3_2136 alpha/beta hydrolase fold K01175 ybfF; esterase [EC:3.1.-.-] D Shewana3_2082 arabinan endo-1,5-alpha-L-arabinosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D Shewana3_2086 beta-xylosidase-like protein K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D Shewana3_2313 alpha amylase, catalytic region K21575 susA; neopullulanase [EC:3.2.1.135] D Shewana3_2319 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Shewana3_0900 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Shewana3_0035 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Shewana3_3366 methyl-accepting chemotaxis sensory transducer K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D Shewana3_1701 Uncharacterized conserved protein UCP029143 K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D Shewana3_2971 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Shewana3_0823 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25] D Shewana3_2564 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D Shewana3_1812 ATPase associated with various cellular activities, AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shewana3_2242 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shewana3_1459 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shewana3_3559 Ubiquinol--cytochrome-c reductase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shewana3_1897 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent helicase HrpA [EC:3.6.4.13] D Shewana3_0622 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent helicase HrpB [EC:3.6.4.13] D Shewana3_2714 alpha/beta hydrolase fold K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114] D Shewana3_0592 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Shewana3_0453 peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Shewana3_2983 peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Shewana3_2713 AMP-dependent synthetase and ligase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1] D Shewana3_0791 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D Shewana3_2401 ATP dependent DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1] D Shewana3_2171 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Shewana3_2170 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Shewana3_2169 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Shewana3_0938 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Shewana3_3378 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Shewana3_0939 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Shewana3_3377 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Shewana3_0940 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Shewana3_3376 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Shewana3_0941 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Shewana3_3375 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Shewana3_0942 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Shewana3_3374 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Shewana3_0943 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Shewana3_3373 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Shewana3_2112 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Shewana3_4302 heavy metal translocating P-type ATPase K23254 silP; P-type Ag+ transporter [EC:7.2.2.15] C 99981 Carbohydrate metabolism D Shewana3_3403 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Shewana3_1052 periplasmic binding protein/LacI transcriptional regulator K11930 torT; periplasmic protein TorT D Shewana3_1059 CBS domain containing protein K04767 acuB; acetoin utilization protein AcuB D Shewana3_2906 protein of unknown function DUF224, cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D Shewana3_2907 4Fe-4S ferredoxin, iron-sulfur binding domain protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D Shewana3_2908 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D Shewana3_0108 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Shewana3_1873 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Shewana3_3910 formate dehydrogenase accessory protein FdhD, putative K02379 fdhD; FdhD protein D Shewana3_2275 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D Shewana3_1967 ferredoxin K11107 yfaE; ferredoxin D Shewana3_4191 ferredoxin K11107 yfaE; ferredoxin D Shewana3_2172 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Shewana3_0920 FMN-binding domain protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Shewana3_2173 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Shewana3_2168 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Shewana3_0003 flavodoxin/nitric oxide synthase K06205 mioC; MioC protein D Shewana3_2279 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D Shewana3_1899 NapD family protein K02570 napD; periplasmic nitrate reductase NapD D Shewana3_3429 NapD family protein K02570 napD; periplasmic nitrate reductase NapD D Shewana3_2784 ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D Shewana3_1057 periplasmic nitrate reductase NapE K02571 napE; periplasmic nitrate reductase NapE D Shewana3_1898 hypothetical protein K02571 napE; periplasmic nitrate reductase NapE D Shewana3_0487 cytochrome C biogenesis protein K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF D Shewana3_0492 formate-dependent nitrite reductase, NrfG protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG D Shewana3_2139 flavodoxin K03839 fldA; flavodoxin I D Shewana3_1902 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC D Shewana3_3431 periplasmic nitrate reductase subunit NapG K02573 napG; ferredoxin-type protein NapG D Shewana3_3432 periplasmic nitrate reductase subunit NapH K02574 napH; ferredoxin-type protein NapH D Shewana3_1405 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Shewana3_3962 formate-dependent nitrite reductase K04013 nrfB; cytochrome c-type protein NrfB D Shewana3_3961 4Fe-4S ferredoxin, iron-sulfur binding domain protein K04014 nrfC; protein NrfC D Shewana3_0493 4Fe-4S ferredoxin, iron-sulfur binding domain protein K04014 nrfC; protein NrfC D Shewana3_3960 Polysulphide reductase, NrfD K04015 nrfD; protein NrfD D Shewana3_0494 Polysulphide reductase, NrfD K04015 nrfD; protein NrfD C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Shewana3_1566 protein of unknown function DUF540 K06203 cysZ; CysZ protein D Shewana3_2315 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein D Shewana3_1194 Protein of unknown function UPF0001 K06997 yggS; PLP dependent protein D Shewana3_1588 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D Shewana3_1979 protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A D Shewana3_1980 conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B C 99987 Cofactor metabolism D Shewana3_0383 HemY domain protein K02498 hemY; HemY protein D Shewana3_3727 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Shewana3_3726 protein of unknown function DUF1243 K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D Shewana3_0370 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D Shewana3_1066 Sterol-binding domain protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D Shewana3_4042 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Shewana3_0146 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism C 99999 Others D Shewana3_1222 DoxX family protein K15977 K15977; putative oxidoreductase D Shewana3_2455 phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase D Shewana3_2223 CoA-binding domain protein K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Shewana3_2569 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Shewana3_1751 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Shewana3_0434 regulator of RpoD, Rsd/AlgQ K07740 rsd; regulator of sigma D D Shewana3_0779 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Shewana3_3532 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Shewana3_4013 RNA binding S1 domain protein K06959 tex; protein Tex C 99974 Translation D Shewana3_0537 Aspartate kinase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Shewana3_3361 protein of unknown function DUF306, Meta and HslJ K03668 hslJ; heat shock protein HslJ D Shewana3_1752 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Shewana3_2662 trigger factor K03545 tig; trigger factor D Shewana3_2233 Ferric reductase domain protein transmembrane component, N-terminal domain protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D Shewana3_0105 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D Shewana3_2092 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D Shewana3_0395 HupE/UreJ protein K03192 ureJ; urease accessory protein D Shewana3_2952 SsrA-binding protein K03664 smpB; SsrA-binding protein D Shewana3_1870 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC D Shewana3_1869 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D Shewana3_1868 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D Shewana3_1875 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D Shewana3_3820 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Shewana3_1587 Prolyl 4-hydroxylase, alpha subunit K07394 K07394; SM-20-related protein D Shewana3_1089 putative protein-disulfide isomerase K07396 K07396; putative protein-disulfide isomerase D Shewana3_4003 HesB/YadR/YfhF-family protein K07400 nfuA; Fe/S biogenesis protein NfuA D Shewana3_1494 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D Shewana3_2320 methylated-DNA-(protein)-cysteine S-methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D Shewana3_2886 5'-3' exonuclease K01146 xni; protein Xni D Shewana3_1804 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Shewana3_1252 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Shewana3_3770 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Shewana3_1810 hypothetical protein K03630 radC; DNA repair protein RadC D Shewana3_2235 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Shewana3_3881 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Shewana3_0136 Excinuclease ABC, C subunit domain protein K07461 K07461; putative endonuclease D Shewana3_0037 DNA protecting protein DprA K04096 smf; DNA processing protein D Shewana3_2052 Recombination protein MgsA K07478 ycaJ; putative ATPase D Shewana3_0039 DNA topoisomerase, type IA, zn finger domain protein K07479 yrdD; putative DNA topoisomerase D Shewana3_4199 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase D Shewana3_4142 transposase, IS4 family protein K07481 K07481; transposase, IS5 family D Shewana3_4339 Integrase, catalytic region K07482 K07482; transposase, IS30 family D Shewana3_4284 Integrase, catalytic region K07482 K07482; transposase, IS30 family D Shewana3_2093 transposase K07483 K07483; transposase D Shewana3_2100 transposase IS3/IS911 K07483 K07483; transposase D Shewana3_4159 putative transposase K07483 K07483; transposase D Shewana3_0093 transposase K07483 K07483; transposase D Shewana3_2359 transposase IS3/IS911 family protein K07483 K07483; transposase D Shewana3_4236 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase D Shewana3_1527 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase D Shewana3_4149 transposase, IS605 OrfB family K07496 K07496; putative transposase D Shewana3_4234 transposase, IS605 OrfB family K07496 K07496; putative transposase D Shewana3_4184 transposase, IS605 OrfB family K07496 K07496; putative transposase D Shewana3_3303 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_2361 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_3862 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_2126 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_2298 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_2142 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_1550 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_1645 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_0341 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_0092 Integrase, catalytic region K07497 K07497; putative transposase D Shewana3_2360 transposase, IS3 family K07497 K07497; putative transposase D Shewana3_2022 phage integrase family protein K14059 int; integrase D Shewana3_2356 phage integrase family protein K14059 int; integrase C 99979 Viral proteins C 99998 Others D Shewana3_2648 phage shock protein A, PspA K03969 pspA; phage shock protein A D Shewana3_1444 Rhodanese domain protein K03972 pspE; phage shock protein E D Shewana3_0318 Rhodanese domain protein K03972 pspE; phage shock protein E D Shewana3_0961 protein of unknown function DUF450 K07504 K07504; predicted type IV restriction endonuclease D Shewana3_2445 conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Shewana3_2081 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D Shewana3_1702 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Shewana3_1703 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Shewana3_1373 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Shewana3_3089 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Shewana3_0004 TGF-beta receptor, type I/II extracellular region K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Shewana3_0821 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Shewana3_4055 sodium/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Shewana3_3144 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shewana3_3420 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shewana3_1484 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shewana3_3332 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D Shewana3_3925 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Shewana3_1039 Na dependent nucleoside transporter domain protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family C 99978 Cell growth D Shewana3_1505 intracellular septation protein A K06190 ispZ; intracellular septation protein D Shewana3_0397 Hemerythrin HHE cation binding domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D Shewana3_2836 SpoOM family protein K06377 spo0M; sporulation-control protein D Shewana3_0050 peptidase M23B K22719 envC; murein hydrolase activator C 99993 Cell motility D Shewana3_0898 conserved hypothetical protein K07337 K07337; penicillin-binding protein activator D Shewana3_2834 Syd family protein K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D Shewana3_0424 signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein D Shewana3_1777 ProQ activator of osmoprotectant transporter ProP K03607 proQ; ProP effector D Shewana3_3249 UspA domain protein K06149 uspA; universal stress protein A D Shewana3_2116 UspA domain protein K14055 uspE; universal stress protein E D Shewana3_1103 hypothetical protein K14055 uspE; universal stress protein E D Shewana3_0301 GTP-binding protein TypA K06207 typA; GTP-binding protein D Shewana3_2466 anti-ECFsigma factor, ChrR K07167 chrR; putative transcriptional regulator D Shewana3_3483 CBS domain containing membrane protein K07168 K07168; CBS domain-containing membrane protein D Shewana3_1007 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Shewana3_0575 PhoH family protein K07175 phoH2; PhoH-like ATPase D Shewana3_1638 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase D Shewana3_1576 cyclic nucleotide-binding protein K07182 K07182; CBS domain-containing protein D Shewana3_0820 SH3, type 3 domain protein K07184 ygiM; SH3 domain protein D Shewana3_1045 membrane protein K07186 smp; membrane protein D Shewana3_0782 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Shewana3_2051 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D Shewana3_0767 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D Shewana3_1371 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Shewana3_1757 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB D Shewana3_2806 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Shewana3_1123 peptidase M23B K06194 nlpD; lipoprotein NlpD D Shewana3_1036 Signal peptidase II K05803 nlpI; lipoprotein NlpI D Shewana3_2775 OmpW family protein K07275 ompW; outer membrane protein D Shewana3_0700 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Shewana3_3349 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Shewana3_0786 Uncharacterized lipoprotein K07286 yajG; uncharacterized lipoprotein D Shewana3_2372 AsmA protein K07289 asmA; AsmA protein D Shewana3_3639 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Shewana3_2750 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Shewana3_3262 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Shewana3_1544 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA D Shewana3_0365 Inner membrane CreD family protein K06143 creD; inner membrane protein D Shewana3_0227 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Shewana3_0236 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Shewana3_0233 TPR repeat-containing protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Shewana3_1228 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D Shewana3_2731 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Shewana3_0581 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin D Shewana3_0889 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Shewana3_1887 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Shewana3_2514 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Shewana3_2710 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC D Shewana3_3575 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Shewana3_3210 ApaG domain protein K06195 apaG; ApaG protein D Shewana3_0388 Frataxin family protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D Shewana3_0739 methyl-accepting chemotaxis sensory transducer K07216 hr; hemerythrin D Shewana3_0496 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein D Shewana3_3909 DNA binding domain, excisionase family K07219 K07219; putative molybdopterin biosynthesis protein D Shewana3_3234 heme utilization protein HuvX K07227 chuX; heme iron utilization protein D Shewana3_4288 copper resistance B precursor K07233 pcoB; copper resistance protein B D Shewana3_2587 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Shewana3_2362 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Shewana3_3844 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur B B 09194 Poorly characterized C 99996 General function prediction only D Shewana3_1482 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Shewana3_2119 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase K03796 bax; Bax protein D Shewana3_1920 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B D Shewana3_0524 GCN5-related N-acetyltransferase K02348 elaA; ElaA protein D Shewana3_2851 transport-associated K04065 osmY; hyperosmotically inducible periplasmic protein D Shewana3_2794 PHP C-terminal domain protein K04477 ycdX; putative hydrolase D Shewana3_2038 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D Shewana3_0042 globin K06886 glbN; hemoglobin D Shewana3_0430 Patatin K07001 K07001; NTE family protein D Shewana3_2605 Patatin K07001 K07001; NTE family protein D Shewana3_1397 Patatin K07001 K07001; NTE family protein D Shewana3_3067 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein D Shewana3_4186 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D Shewana3_0311 tRNA-processing RNAse BN K07058 K07058; membrane protein D Shewana3_3574 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Shewana3_0807 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE D Shewana3_2261 Rhodanese domain protein K07146 K07146; UPF0176 protein D Shewana3_1746 protein of unknown function DUF489 K07153 hflD; high frequency lysogenization protein D Shewana3_1506 ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF D Shewana3_4041 LemA family protein K03744 lemA; LemA protein D Shewana3_0901 SlyX family protein K03745 slyX; SlyX protein D Shewana3_0038 protein of unknown function DUF494 K03747 smg; Smg protein D Shewana3_2415 CreA family protein K05805 creA; CreA protein D Shewana3_3442 protein of unknown function DUF335, SprT K02742 sprT; SprT protein D Shewana3_1481 Sporulation domain protein K03749 dedD; DedD protein D Shewana3_3892 Sporulation domain protein K03112 damX; DamX protein D Shewana3_1919 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A D Shewana3_1773 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Shewana3_1774 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Shewana3_2975 protein of unknown function DUF368 K08974 K08974; putative membrane protein D Shewana3_0753 membrane-flanked domain K08981 K08981; putative membrane protein D Shewana3_3415 conserved hypothetical protein K08984 yjdF; putative membrane protein D Shewana3_2644 conserved hypothetical protein 1620 K08990 ycjF; putative membrane protein D Shewana3_3974 protein of unknown function DUF1145 K08993 yhhL; putative membrane protein D Shewana3_2159 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein D Shewana3_2773 conserved hypothetical protein K09914 K09914; putative lipoprotein D Shewana3_0804 Cupin 2, conserved barrel domain protein K11312 K11312; cupin 2 domain-containing protein D Shewana3_2588 phosphate-starvation-inducible E K13256 psiE; protein PsiE D Shewana3_2861 PhnA protein K06193 phnA; protein PhnA C 99997 Function unknown D Shewana3_3560 Radical SAM domain protein K06871 K06871; uncharacterized protein D Shewana3_1693 conserved hypothetical signal peptide protein K06889 K06889; uncharacterized protein D Shewana3_2645 protein of unknown function DUF463, YcjX family protein K06918 K06918; uncharacterized protein D Shewana3_3186 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Shewana3_2717 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Shewana3_2574 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Shewana3_0351 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Shewana3_0046 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Shewana3_1169 amine oxidase K06954 K06954; uncharacterized protein D Shewana3_0084 conserved hypothetical protein K06975 K06975; uncharacterized protein D Shewana3_0653 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D Shewana3_2858 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D Shewana3_3108 protein of unknown function DUF861, cupin_3 K06995 K06995; uncharacterized protein D Shewana3_3986 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Shewana3_2706 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Shewana3_2575 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Shewana3_2577 glyoxalase family protein K06996 K06996; uncharacterized protein D Shewana3_0729 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Shewana3_2292 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Shewana3_1784 conserved hypothetical protein K07003 K07003; uncharacterized protein D Shewana3_0904 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein D Shewana3_1595 PKD domain containing protein K07004 K07004; uncharacterized protein D Shewana3_2428 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K07014 K07014; uncharacterized protein D Shewana3_1514 putative esterase K07017 K07017; uncharacterized protein D Shewana3_2737 putative esterase K07017 K07017; uncharacterized protein D Shewana3_3398 alpha/beta hydrolase fold K07019 K07019; uncharacterized protein D Shewana3_2893 conserved hypothetical protein K07020 K07020; uncharacterized protein D Shewana3_2740 conserved hypothetical protein K07032 K07032; uncharacterized protein D Shewana3_3180 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein D Shewana3_0462 protein of unknown function, zinc metallopeptidase putative K07054 K07054; uncharacterized protein D Shewana3_3392 conserved hypothetical protein K07070 K07070; uncharacterized protein D Shewana3_1542 conserved hypothetical protein K07071 K07071; uncharacterized protein D Shewana3_0457 response regulator receiver protein K07080 K07080; uncharacterized protein D Shewana3_0834 protein of unknown function DUF897 K07086 K07086; uncharacterized protein D Shewana3_0443 permease K07089 K07089; uncharacterized protein D Shewana3_2333 permease K07089 K07089; uncharacterized protein D Shewana3_2338 permease K07089 K07089; uncharacterized protein D Shewana3_2631 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shewana3_0062 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shewana3_3616 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shewana3_3041 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shewana3_1662 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shewana3_2613 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shewana3_3118 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shewana3_2084 permease K07090 K07090; uncharacterized protein D Shewana3_1995 protein of unknown function DUF839 K07093 K07093; uncharacterized protein D Shewana3_3481 hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein D Shewana3_0109 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Shewana3_3511 NAD-dependent epimerase/dehydratase K07118 K07118; uncharacterized protein D Shewana3_3880 LppC family lipoprotein K07121 K07121; uncharacterized protein D Shewana3_3685 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shewana3_0618 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shewana3_3875 conserved hypothetical protein K07136 K07136; uncharacterized protein D Shewana3_3048 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein D Shewana3_2978 protein of unknown function DUF405 K07148 K07148; uncharacterized protein D Shewana3_2464 peptidase S16, lon domain protein K07157 K07157; uncharacterized protein D Shewana3_0007 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Shewana3_3085 GatB/Yqey domain protein K09117 K09117; uncharacterized protein D Shewana3_1191 conserved hypothetical protein K09131 K09131; uncharacterized protein D Shewana3_0990 protein of unknown function DUF493 K09158 K09158; uncharacterized protein D Shewana3_2379 conserved hypothetical protein K09160 K09160; uncharacterized protein D Shewana3_1170 protein of unknown function DUF1365 K09701 K09701; uncharacterized protein D Shewana3_3487 protein of unknown function DUF985 K09705 K09705; uncharacterized protein D Shewana3_2255 conserved hypothetical protein K09707 K09707; uncharacterized protein D Shewana3_0128 protein of unknown function DUF333 K09712 K09712; uncharacterized protein D Shewana3_3451 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Shewana3_1627 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Shewana3_1504 YCII-related K09780 K09780; uncharacterized protein D Shewana3_0979 protein of unknown function DUF808 K09781 K09781; uncharacterized protein D Shewana3_1637 protein of unknown function DUF444 K09786 K09786; uncharacterized protein D Shewana3_2448 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Shewana3_2582 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Shewana3_2114 conserved hypothetical protein K09792 K09792; uncharacterized protein D Shewana3_3681 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Shewana3_1294 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Shewana3_1448 protein of unknown function DUF541 K09797 K09797; uncharacterized protein D Shewana3_0048 protein of unknown function DUF610, YibQ K09798 K09798; uncharacterized protein D Shewana3_2950 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein D Shewana3_4243 conserved hypothetical protein K09805 K09805; uncharacterized protein D Shewana3_4242 conserved hypothetical protein K09805 K09805; uncharacterized protein D Shewana3_3626 protein of unknown function DUF541 K09807 K09807; uncharacterized protein D Shewana3_0945 protein of unknown function DUF539 K05952 K05952; uncharacterized protein D Shewana3_1623 conserved hypothetical protein K00243 K00243; uncharacterized protein D Shewana3_1921 protein of unknown function DUF330 K09857 K09857; uncharacterized protein D Shewana3_0899 Tetratricopeptide TPR_2 repeat protein K09859 K09859; uncharacterized protein D Shewana3_3143 protein of unknown function DUF328 K09861 K09861; uncharacterized protein D Shewana3_0414 protein of unknown function DUF329 K09862 K09862; uncharacterized protein D Shewana3_1108 protein of unknown function DUF416 K09891 K09891; uncharacterized protein D Shewana3_4114 protein of unknown function DUF414 K09894 K09894; uncharacterized protein D Shewana3_3504 yecA family protein K09895 K09895; uncharacterized protein D Shewana3_2404 protein of unknown function DUF413 K09897 K09897; uncharacterized protein D Shewana3_3399 conserved hypothetical protein K09898 K09898; uncharacterized protein D Shewana3_1553 protein of unknown function DUF412 K09899 K09899; uncharacterized protein D Shewana3_2381 protein of unknown function DUF709 K09902 K09902; uncharacterized protein D Shewana3_2427 protein of unknown function DUF1414 K09904 K09904; uncharacterized protein D Shewana3_2421 protein of unknown function DUF991 K09907 K09907; uncharacterized protein D Shewana3_2633 conserved hypothetical protein K09909 K09909; uncharacterized protein D Shewana3_1584 conserved hypothetical protein K09909 K09909; uncharacterized protein D Shewana3_0655 Uncharacterized conserved protein UCP006287 K09910 K09910; uncharacterized protein D Shewana3_1983 conserved hypothetical protein K09912 K09912; uncharacterized protein D Shewana3_1622 protein of unknown function DUF480 K09915 K09915; uncharacterized protein D Shewana3_1962 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein D Shewana3_1775 YebG family protein K09918 K09918; uncharacterized protein D Shewana3_2486 protein of unknown function DUF482 K09919 K09919; uncharacterized protein D Shewana3_0727 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein D Shewana3_0392 protein of unknown function DUF484 K09921 K09921; uncharacterized protein D Shewana3_3001 protein of unknown function DUF486 K09922 K09922; uncharacterized protein D Shewana3_1183 protein of unknown function DUF469 K09923 K09923; uncharacterized protein D Shewana3_3381 protein of unknown function UPF0167 K09925 K09925; uncharacterized protein D Shewana3_2111 conserved hypothetical protein K09926 K09926; uncharacterized protein D Shewana3_0367 protein of unknown function DUF1006 K09927 K09927; uncharacterized protein D Shewana3_2586 conserved hypothetical protein K09928 K09928; uncharacterized protein D Shewana3_2449 conserved hypothetical protein K09929 K09929; uncharacterized protein D Shewana3_2450 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Shewana3_0975 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Shewana3_0694 conserved hypothetical protein K09937 K09937; uncharacterized protein D Shewana3_1642 conserved hypothetical protein K09938 K09938; uncharacterized protein D Shewana3_1014 conserved hypothetical protein K09939 K09939; uncharacterized protein D Shewana3_0271 conserved hypothetical protein K09940 K09940; uncharacterized protein D Shewana3_2743 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein D Shewana3_0740 protein of unknown function DUF1508 K09946 K09946; uncharacterized protein D Shewana3_1217 conserved hypothetical protein K09954 K09954; uncharacterized protein D Shewana3_2080 acetyl-CoA carboxylase, biotin carboxylase K09955 K09955; uncharacterized protein D Shewana3_2776 protein of unknown function DUF925 K09962 K09962; uncharacterized protein D Shewana3_3796 conserved hypothetical protein K09968 K09968; uncharacterized protein D Shewana3_0556 GumN family protein K09973 K09973; uncharacterized protein D Shewana3_1388 protein of unknown function DUF886 K09975 K09975; uncharacterized protein D Shewana3_1843 Uncharacterized conserved protein UCP025560 K09978 K09978; uncharacterized protein D Shewana3_0828 conserved hypothetical protein K09980 K09980; uncharacterized protein D Shewana3_0239 conserved hypothetical protein K09983 K09983; uncharacterized protein D Shewana3_1738 conserved hypothetical protein K09986 K09986; uncharacterized protein D Shewana3_0822 protein of unknown function DUF47 K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 18, 2024