+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Vibrio cholerae O1 2010EL-1786
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E Vch1786_I1521 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
E Vch1786_I2728 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
E Vch1786_I1953 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E Vch1786_I2094 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E Vch1786_I2634 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E Vch1786_I2589 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:3.6.4.13]
E Vch1786_II0457 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
E Vch1786_II0997 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
E Vch1786_I0906 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
E Vch1786_II0494 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
E Vch1786_I2478 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E Vch1786_I1939 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E Vch1786_I0057 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E Vch1786_I2591 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
E Vch1786_I2183 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E Vch1786_I0361 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
E Vch1786_I2157 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E Vch1786_II0510 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E Vch1786_I2649 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Others
E Vch1786_I0231 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E Vch1786_I0236 conserved hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
E Vch1786_I0002 pcnB; polyA polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E Vch1786_I0175 putative (di)nucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E Vch1786_I2853 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
E Vch1786_I2708 mshH; regulatory protein CsrD K18765 csrD; RNase E specificity factor CsrD
E Vch1786_I2165 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
E Vch1786_I1855 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
E Vch1786_I2733 hypothetical protein K09893 rraB; regulator of ribonuclease activity B
E Vch1786_I2028 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024