+E Transcription factors KO #

  Transcription Factors - Yersinia aleksiciae

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D ACZ76_11795 restriction endonuclease subunit M K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D ACZ76_08525 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D ACZ76_00100 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D ACZ76_00525 methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C TCP C DMRT C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D ACZ76_04215 transcriptional regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D ACZ76_12130 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D ACZ76_00420 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D ACZ76_09605 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D ACZ76_04725 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D ACZ76_09955 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D ACZ76_10470 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D ACZ76_12210 nhaR; transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D ACZ76_09815 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D ACZ76_05175 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D ACZ76_12395 leuO; transcriptional regulator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D ACZ76_17645 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D ACZ76_06465 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D ACZ76_06475 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D ACZ76_08825 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D ACZ76_06855 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D ACZ76_09905 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D ACZ76_16245 transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D ACZ76_08205 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D ACZ76_13215 transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D ACZ76_03645 srlR; transcriptional regulator K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D ACZ76_01510 DeoR faimly transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator C LacI family D ACZ76_04875 transcriptional regulator K02529 lacI; LacI family transcriptional regulator D ACZ76_08820 XylR family transcriptional regulator K02529 lacI; LacI family transcriptional regulator D ACZ76_02110 transcriptional regulator K02529 lacI; LacI family transcriptional regulator D ACZ76_09100 transcriptional regulator K02529 lacI; LacI family transcriptional regulator D ACZ76_05645 LacI family transcriptional regulator K02529 lacI; LacI family transcriptional regulator D ACZ76_14510 LacI family transcriptional regulator K02529 lacI; LacI family transcriptional regulator D ACZ76_09690 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D ACZ76_12415 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D ACZ76_06745 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D ACZ76_02890 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor D ACZ76_08280 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D ACZ76_15595 transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator C GntR family D ACZ76_11660 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D ACZ76_17710 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D ACZ76_12590 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D ACZ76_16055 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D ACZ76_06400 transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D ACZ76_04370 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D ACZ76_14170 transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D ACZ76_09485 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator D ACZ76_00780 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D ACZ76_14515 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D ACZ76_09825 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D ACZ76_02475 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D ACZ76_09045 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D ACZ76_01230 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D ACZ76_16450 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D ACZ76_05020 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D ACZ76_14060 transcriptional regulator K05800 ybaO; Lrp/AsnC family transcriptional regulator C LuxR family D ACZ76_16865 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D ACZ76_08185 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D ACZ76_13555 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D ACZ76_14335 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D ACZ76_07635 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D ACZ76_15085 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D ACZ76_07225 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D ACZ76_07325 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D ACZ76_07915 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family D ACZ76_03830 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D ACZ76_11170 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family C XRE family C Other families D ACZ76_07545 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D ACZ76_06955 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D ACZ76_12115 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D ACZ76_11800 DNA-binding protein K07724 ner; Ner family transcriptional regulator D ACZ76_15925 transcriptional regulator K07724 ner; Ner family transcriptional regulator D ACZ76_09245 transcriptional regulator K07724 ner; Ner family transcriptional regulator D ACZ76_01305 hypothetical protein K07724 ner; Ner family transcriptional regulator D ACZ76_11365 DNA-binding protein K07724 ner; Ner family transcriptional regulator D ACZ76_12355 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D ACZ76_17320 peptide ABC transporter substrate-binding protein K11925 sgrR; SgrR family transcriptional regulator D ACZ76_12065 transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D ACZ76_00140 transcriptional regulator K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D ACZ76_02085 transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D ACZ76_10965 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator D ACZ76_15400 transcriptional regulator K02019 modE; molybdate transport system regulatory protein D ACZ76_08520 hypothetical protein K21829 dauR; D-arginine utilization repressor B Ribbon-helix-helix C CopG family C Other families D ACZ76_09675 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D ACZ76_00870 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D ACZ76_00015 bifunctional antitoxin/transcriptional repressor RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D ACZ76_13995 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D ACZ76_10550 rfaH; transcriptional regulator K05785 rfaH; transcriptional antiterminator RfaH D ACZ76_11355 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D ACZ76_15035 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D ACZ76_08640 transcriptional regulator K02562 mtlR; mannitol operon repressor D ACZ76_03455 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D ACZ76_11845 transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor D ACZ76_11935 transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon D ACZ76_06805 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D ACZ76_04185 dipicolinate synthase K07733 alpA; prophage regulatory protein D ACZ76_05285 hypothetical protein K07735 algH; putative transcriptional regulator D ACZ76_12740 dksA; RNA polymerase-binding transcription factor K06204 dksA; DnaK suppressor protein D ACZ76_13885 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D ACZ76_13715 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl D ACZ76_00135 transcriptional regulator K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D ACZ76_12425 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: January 19, 2023 #
Classification taken and modified from TRANSFAC 7.0