+E Transcription factors KO #

  Transcription Factors - Yersinia massiliensis

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D DA391_12520 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D DA391_05370 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C TCP C DMRT C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D DA391_11150 arabinose operon transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D DA391_19130 HTH-type transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D DA391_19135 HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D DA391_05270 transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D DA391_19075 MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D DA391_09920 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D DA391_22435 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D DA391_04765 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DA391_22075 HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D DA391_21605 HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D DA391_18980 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D DA391_22220 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D DA391_04335 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D DA391_18730 transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D DA391_10945 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D DA391_12820 HTH-type transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D DA391_17915 DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D DA391_08520 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D DA391_04010 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D DA391_01875 HTH-type transcriptional activator AaeR K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D DA391_03175 LysR family transcriptional regulator K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon D DA391_22125 HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D DA391_14700 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D DA391_00730 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D DA391_03320 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D DA391_17735 transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D DA391_17745 DeoR/GlpR transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D DA391_13840 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D DA391_05895 srlR; HTH domain-containing protein K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor C LacI family D DA391_03060 LacI family transcriptional regulator K02529 lacI; LacI family transcriptional regulator D DA391_03230 LacI family transcriptional regulator K02529 lacI; LacI family transcriptional regulator D DA391_07675 HTH-type transcriptional regulator GalS K02529 lacI; LacI family transcriptional regulator D DA391_04610 HTH-type transcriptional regulator GalR K02529 lacI; LacI family transcriptional regulator D DA391_00300 XylR family transcriptional regulator K02529 lacI; LacI family transcriptional regulator D DA391_22880 transcriptional regulator RbsR K02529 lacI; LacI family transcriptional regulator D DA391_22345 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D DA391_18710 catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D DA391_01995 treR; HTH-type transcriptional regulator TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D DA391_06755 LacI family DNA-binding transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor D DA391_11865 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D DA391_00660 HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D DA391_15235 LacI family DNA-binding transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator D DA391_11180 Mal regulon transcriptional regulator MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein C GntR family D DA391_19640 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D DA391_12745 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D DA391_16350 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D DA391_12065 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D DA391_18535 pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DA391_14850 FCD domain-containing protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D DA391_02345 transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D DA391_03635 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D DA391_05125 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D DA391_09905 FCD domain-containing protein K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism C TetR/AcrR family D DA391_16750 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D DA391_22560 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D DA391_09495 HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator D DA391_11825 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D DA391_16365 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D DA391_22210 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D DA391_07330 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D DA391_22935 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D DA391_14475 leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DA391_08665 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DA391_04505 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DA391_11320 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DA391_16875 Lrp/AsnC family transcriptional regulator K05800 ybaO; Lrp/AsnC family transcriptional regulator C LuxR family D DA391_13720 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D DA391_13765 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D DA391_00750 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D DA391_11790 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D DA391_17380 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D DA391_01370 Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D DA391_15745 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D DA391_01585 transcriptional regulator Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D DA391_01490 acetate operon transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D DA391_02420 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D DA391_10325 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D DA391_10480 IclR family transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D DA391_01075 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DA391_11440 fumarate/nitrate reduction transcriptional regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D DA391_05675 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D DA391_20355 HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D DA391_23665 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C Other families D DA391_13810 MurR/RpiR family transcriptional regulator K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon D DA391_18095 SIS domain-containing protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D DA391_12175 transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D DA391_21450 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D DA391_01775 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D DA391_19090 trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D DA391_12480 transcriptional regulator K07724 ner; Ner family transcriptional regulator D DA391_19930 transcriptional regulator K07724 ner; Ner family transcriptional regulator D DA391_11535 transcriptional regulator K07724 ner; Ner family transcriptional regulator D DA391_18790 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D DA391_13480 SgrR family transcriptional regulator K11925 sgrR; SgrR family transcriptional regulator D DA391_19180 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D DA391_19445 helix-turn-helix domain-containing protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D DA391_23355 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D DA391_10615 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D DA391_04630 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D DA391_08570 nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D DA391_07700 formate hydrogenlyase transcriptional activator FlhA K15836 fhlA; formate hydrogenlyase transcriptional activator D DA391_20590 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator D DA391_15430 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein D DA391_00045 hypothetical protein K21829 dauR; D-arginine utilization repressor D DA391_06580 transcriptional regulator K07726 K07726; putative transcriptional regulator D DA391_04085 transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D DA391_22365 met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D DA391_09415 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family D DA391_06690 transcriptional antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator D DA391_11605 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator C Others D DA391_16945 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D DA391_23305 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DA391_23395 ParC K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DA391_24050 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DA391_21525 transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH D DA391_23640 antitermination protein NusG K05785 rfaH; transcriptional antiterminator RfaH D DA391_23940 transcriptional activator K05785 rfaH; transcriptional antiterminator RfaH D DA391_19940 transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D DA391_15790 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D DA391_11235 ROK family transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D DA391_00225 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor D DA391_11640 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D DA391_06090 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D DA391_11685 sigma-54-dependent Fis family transcriptional regulator K03974 pspF; psp operon transcriptional activator D DA391_11670 envelope stress response membrane protein PspC K03973 pspC; phage shock protein C D DA391_19400 transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor D DA391_19310 sigma-54-dependent Fis family transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon D DA391_01930 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D DA391_12445 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D DA391_19495 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein D DA391_05390 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein D DA391_14110 dipicolinate synthase K07733 alpA; prophage regulatory protein D DA391_00360 Rha family transcriptional regulator K07733 alpA; prophage regulatory protein D DA391_04235 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D DA391_18410 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; DnaK suppressor protein D DA391_17055 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D DA391_17220 Crl family RNA polymerase assembly factor K11926 crl; sigma factor-binding protein Crl D DA391_09605 cell division protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D DA391_18700 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: January 31, 2023 #
Classification taken and modified from TRANSFAC 7.0