KEGG Orthology (KO) - Aeromonas hydrophila pc104A

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:ahp03030]
     03410 Base excision repair [PATH:ahp03410]
     03420 Nucleotide excision repair [PATH:ahp03420]
     03430 Mismatch repair [PATH:ahp03430]
     03440 Homologous recombination [PATH:ahp03440]
       V429_18185 ssDNA exonuclease RecJ
       V429_21855 single-stranded DNA-binding protein
       V429_00015 recF; recombination protein F
       V429_04275 DNA recombination protein RecO
       V429_13695 recR; recombination protein RecR
       V429_20625 recombinase RecA
       V429_01075 DNA polymerase I
       V429_20030 ruvA; ATP-dependent DNA helicase RuvA
       V429_20025 ruvB; ATP-dependent DNA helicase RuvB
       V429_07065 crossover junction endodeoxyribonuclease RuvC
       V429_01510 ATP-dependent DNA helicase RecG
       V429_00315 ATP-dependent DNA helicase RecG
       V429_21950 exodeoxyribonuclease V subunit beta
       V429_21955 exodeoxyribonuclease V subunit gamma
       V429_21945 exodeoxyribonuclease V subunit alpha
       V429_06550 dnaE; DNA polymerase III subunit alpha
       V429_00010 DNA polymerase III subunit beta
       V429_12245 DNA polymerase III subunit gamma/tau
       V429_18085 DNA polymerase III subunit delta
       V429_12015 ATPase AAA
       V429_13260 DNA polymerase III subunit epsilon
       V429_08920 DNA polymerase III subunit epsilon
       V429_20550 DNA polymerase III subunit chi
       V429_03870 hypothetical protein
       V429_22895 primosomal protein N'
       V429_19320 hypothetical protein
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K02317 dnaT; DNA replication protein DnaT
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:ahp03000]
     03021 Transcription machinery [BR:ahp03021]
     03019 Messenger RNA biogenesis [BR:ahp03019]
     03041 Spliceosome
     03011 Ribosome [BR:ahp03011]
     03009 Ribosome biogenesis [BR:ahp03009]
     03016 Transfer RNA biogenesis [BR:ahp03016]
     03012 Translation factors [BR:ahp03012]
     03110 Chaperones and folding catalysts [BR:ahp03110]
     04131 Membrane trafficking [BR:ahp04131]
     04121 Ubiquitin system [BR:ahp04121]
     03051 Proteasome [BR:ahp03051]
     03032 DNA replication proteins [BR:ahp03032]
     03036 Chromosome and associated proteins [BR:ahp03036]
     03400 DNA repair and recombination proteins [BR:ahp03400]
       V429_03475 cysteine methyltransferase
       V429_05750 cysteine methyltransferase
       V429_06100 deoxyribodipyrimidine photolyase
       V429_17550 uracil-DNA glycosylase
       V429_20985 adenine glycosylase
       V429_14515 endonuclease III
       V429_22955 DNA mismatch repair protein MutT
       V429_19880 ADP-ribose pyrophosphatase
       V429_21435 7
       V429_11230 NUDIX hydrolase
       V429_00890 deoxyuridine 5'-triphosphate nucleotidohydrolase
       V429_13390 6-O-methylguanine DNA methyltransferase
       V429_05755 AraC family transcriptional regulator
       V429_00745 DNA-3-methyladenine glycosidase
       V429_00920 formamidopyrimidine-DNA glycosylase
       V429_16545 exodeoxyribonuclease III
       V429_12940 endonuclease IV
       V429_18185 ssDNA exonuclease RecJ
       V429_06735 ligA; NAD-dependent DNA ligase LigA
       V429_01075 DNA polymerase I
       V429_21845 excinuclease ABC subunit A
       V429_11030 excinuclease ABC subunit B
       V429_15380 uvrC; excinuclease ABC subunit C
       V429_01205 uvrD; DNA-dependent helicase II
       V429_22220 rpoB; DNA-directed RNA polymerase subunit beta
       V429_22215 DNA-directed RNA polymerase subunit beta'
       V429_01755 DNA-directed RNA polymerase subunit alpha
       V429_00200 rpoZ; DNA-directed RNA polymerase subunit omega
       V429_13340 transcription-repair coupling factor
       V429_20650 DNA mismatch repair protein MutS
       V429_04885 DNA mismatch repair protein MutL
       V429_03595 DNA mismatch repair protein MutH
       V429_10575 exonuclease I
       V429_13505 xseA; exodeoxyribonuclease VII large subunit
       V429_18430 exodeoxyribonuclease VII small subunit
       V429_06550 dnaE; DNA polymerase III subunit alpha
       V429_00010 DNA polymerase III subunit beta
       V429_20550 DNA polymerase III subunit chi
       V429_18085 DNA polymerase III subunit delta
       V429_12015 ATPase AAA
       V429_13260 DNA polymerase III subunit epsilon
       V429_08920 DNA polymerase III subunit epsilon
       V429_12245 DNA polymerase III subunit gamma/tau
       V429_03870 hypothetical protein
       V429_21855 single-stranded DNA-binding protein
       V429_17770 DNA adenine methylase
       V429_21950 exodeoxyribonuclease V subunit beta
       V429_21955 exodeoxyribonuclease V subunit gamma
       V429_21945 exodeoxyribonuclease V subunit alpha
       V429_20625 recombinase RecA
       V429_20030 ruvA; ATP-dependent DNA helicase RuvA
       V429_20025 ruvB; ATP-dependent DNA helicase RuvB
       V429_07065 crossover junction endodeoxyribonuclease RuvC
       V429_22895 primosomal protein N'
       V429_19320 hypothetical protein
       V429_17015 exonuclease SbcC
       V429_17025 metallophosphatase
       V429_20200 DNA repair protein RadA
       V429_00015 recF; recombination protein F
       V429_01510 ATP-dependent DNA helicase RecG
       V429_00315 ATP-dependent DNA helicase RecG
       V429_04275 DNA recombination protein RecO
       V429_13695 recR; recombination protein RecR
       V429_16685 recombination and repair protein
       V429_17035 recombination associated protein
       V429_14435 carboxylate--amine ligase
       V429_11645 DNA gyrase subunit A
       V429_00020 gyrB; DNA gyrase subunit B
       V429_17335 DNA topoisomerase I
       V429_20185 DNA-binding protein
       V429_13285 transcriptional regulator HU subunit alpha
       V429_19365 Fis family transcriptional regulator
       V429_11695 ihfA; integration host factor subunit alpha
       V429_10215 ihfB; integration host factor subunit beta
       V429_11075 ATP-dependent DNA helicase RecQ
       V429_22745 ATP-dependent DNA helicase RecQ
       V429_05930 DEAD/DEAH box helicase
       V429_10265 transcriptional regulator
       V429_15440 transcriptional regulator
       V429_16730 transcriptional regulator
       V429_06325 DNA polymerase IV
       V429_20290 prophage transcriptional regulator
       V429_01015 LexA family transcriptional regulator
       V429_12890 DNA polymerase II
       V429_10635 damage-inducible protein I
       V429_20620 RecX family transcriptional regulator
       V429_23095 ATP-dependent DNA helicase Rep
       V429_12425 ATP-dependent helicase
       V429_15580 ATP-dependent DNA helicase DinG
       V429_05950 helicase
       V429_04635 NrdJa
       V429_11630 ribonucleotide-diphosphate reductase subunit alpha
       V429_11625 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:ahp03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: August 12, 2020