KEGG Orthology (KO) - Agrobacterium larrymoorei

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:alf03030]
     03410 Base excision repair [PATH:alf03410]
       CFBP5473_14345 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
       CFBP5473_02640 nth; endonuclease III
       CFBP5473_18180 DNA-3-methyladenine glycosylase 2 family protein
       CFBP5473_12460 DNA-3-methyladenine glycosylase I
       CFBP5473_05075 DUF4130 domain-containing protein
       CFBP5473_10540 uracil-DNA glycosylase
       CFBP5473_03745 uracil-DNA glycosylase
       CFBP5473_11665 mutY; A/G-specific adenine glycosylase
       CFBP5473_17395 DNA-3-methyladenine glycosylase
       CFBP5473_01490 exodeoxyribonuclease III
       CFBP5473_06880 xth; exodeoxyribonuclease III
       CFBP5473_22225 xth; exodeoxyribonuclease III
       CFBP5473_00550 polA; DNA polymerase I
       CFBP5473_08840 recJ; single-stranded-DNA-specific exonuclease RecJ
       CFBP5473_05625 ligA; NAD-dependent DNA ligase LigA
       CFBP5473_11410 cisplatin damage response ATP-dependent DNA ligase
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
     03420 Nucleotide excision repair [PATH:alf03420]
     03430 Mismatch repair [PATH:alf03430]
     03440 Homologous recombination [PATH:alf03440]
     03450 Non-homologous end-joining [PATH:alf03450]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:alf03000]
     03021 Transcription machinery [BR:alf03021]
     03019 Messenger RNA biogenesis [BR:alf03019]
     03041 Spliceosome
     03011 Ribosome [BR:alf03011]
     03009 Ribosome biogenesis [BR:alf03009]
     03016 Transfer RNA biogenesis [BR:alf03016]
     03012 Translation factors [BR:alf03012]
     03110 Chaperones and folding catalysts [BR:alf03110]
     04131 Membrane trafficking [BR:alf04131]
     04121 Ubiquitin system
     03051 Proteasome
     03032 DNA replication proteins [BR:alf03032]
     03036 Chromosome and associated proteins [BR:alf03036]
     03400 DNA repair and recombination proteins [BR:alf03400]
       CFBP5473_09500 methylated-DNA--[protein]-cysteine S-methyltransferase
       CFBP5473_09510 deoxyribodipyrimidine photo-lyase
       CFBP5473_03745 uracil-DNA glycosylase
       CFBP5473_17395 DNA-3-methyladenine glycosylase
       CFBP5473_11665 mutY; A/G-specific adenine glycosylase
       CFBP5473_02640 nth; endonuclease III
       CFBP5473_11410 cisplatin damage response ATP-dependent DNA ligase
       CFBP5473_17970 mutT; 8-oxo-dGTP diphosphatase MutT
       CFBP5473_10120 NUDIX hydrolase
       CFBP5473_00385 dUTP diphosphatase
       CFBP5473_02650 methylated-DNA--[protein]-cysteine S-methyltransferase
       CFBP5473_15780 alkB; DNA oxidative demethylase AlkB
       CFBP5473_05075 DUF4130 domain-containing protein
       CFBP5473_10540 uracil-DNA glycosylase
       CFBP5473_18180 DNA-3-methyladenine glycosylase 2 family protein
       CFBP5473_12460 DNA-3-methyladenine glycosylase I
       CFBP5473_14345 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
       CFBP5473_01490 exodeoxyribonuclease III
       CFBP5473_06880 xth; exodeoxyribonuclease III
       CFBP5473_22225 xth; exodeoxyribonuclease III
       CFBP5473_08840 recJ; single-stranded-DNA-specific exonuclease RecJ
       CFBP5473_05625 ligA; NAD-dependent DNA ligase LigA
       CFBP5473_00550 polA; DNA polymerase I
       CFBP5473_07740 uvrA; excinuclease ABC subunit UvrA
       CFBP5473_06055 uvrB; excinuclease ABC subunit UvrB
       CFBP5473_20505 uvrC; excinuclease ABC subunit UvrC
       CFBP5473_05725 ATP-dependent DNA helicase
       CFBP5473_22270 ATP-dependent helicase
       CFBP5473_06185 rpoB; DNA-directed RNA polymerase subunit beta
       CFBP5473_06190 rpoC; DNA-directed RNA polymerase subunit beta'
       CFBP5473_06375 DNA-directed RNA polymerase subunit alpha
       CFBP5473_10270 DNA-directed RNA polymerase subunit omega
       CFBP5473_07465 mfd; transcription-repair coupling factor
       CFBP5473_14225 mutS; DNA mismatch repair protein MutS
       CFBP5473_12290 mutL; DNA mismatch repair endonuclease MutL
       CFBP5473_18505 exodeoxyribonuclease VII large subunit
       CFBP5473_11945 exodeoxyribonuclease VII small subunit
       CFBP5473_22145 DNA polymerase III subunit epsilon
       CFBP5473_09125 dnaE; DNA polymerase III subunit alpha
       CFBP5473_18360 DNA polymerase III subunit beta
       CFBP5473_09815 DNA polymerase III subunit chi
       CFBP5473_01440 DNA polymerase III subunit delta
       CFBP5473_08060 DNA polymerase III subunit delta'
       CFBP5473_01205 dnaQ; DNA polymerase III subunit epsilon
       CFBP5473_05650 DNA polymerase III subunit epsilon
       CFBP5473_22520 3'-5' exonuclease
       CFBP5473_00350 DNA polymerase III subunit gamma/tau
       CFBP5473_07745 single-stranded DNA-binding protein
       CFBP5473_13650 vsr; DNA mismatch endonuclease Vsr
       CFBP5473_06610 recA; recombinase RecA
       CFBP5473_03500 ruvA; Holliday junction branch migration protein RuvA
       CFBP5473_03515 ruvB; Holliday junction branch migration DNA helicase RuvB
       CFBP5473_03495 ruvC; crossover junction endodeoxyribonuclease RuvC
       CFBP5473_02265 primosomal protein N'
       CFBP5473_10000 radA; DNA repair protein RadA
       CFBP5473_00245 recF; DNA replication/repair protein RecF
       CFBP5473_07455 recG; ATP-dependent DNA helicase RecG
       CFBP5473_10220 recO; DNA repair protein RecO
       CFBP5473_00335 recR; recombination protein RecR
       CFBP5473_05600 recN; DNA repair protein RecN
       CFBP5473_01115 addA; double-strand break repair helicase AddA
       CFBP5473_01110 addB; double-strand break repair protein AddB
       CFBP5473_22235 Ku protein
       CFBP5473_22240 Ku protein
       CFBP5473_19670 Ku protein
       CFBP5473_19680 Ku protein
       CFBP5473_24335 ATP-dependent DNA ligase
       CFBP5473_21565 ATP-dependent DNA ligase
       CFBP5473_22245 ligD; DNA ligase D
       CFBP5473_19675 ligD; DNA ligase D
       CFBP5473_08175 gyrA; DNA gyrase subunit A
       CFBP5473_01170 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B
       CFBP5473_09055 topA; type I DNA topoisomerase
       CFBP5473_17665 DNA topoisomerase IB
       CFBP5473_09280 HU family DNA-binding protein
       CFBP5473_23345 HU family DNA-binding protein
       CFBP5473_09725 integration host factor subunit alpha
       CFBP5473_14265 integration host factor subunit beta
       CFBP5473_15225 recQ; DNA helicase RecQ
       CFBP5473_09110 DNA polymerase IV
       CFBP5473_16155 dinB; DNA polymerase IV
       CFBP5473_08495 lexA; transcriptional repressor LexA
       CFBP5473_21570 damage-inducible mutagenesis protein
       CFBP5473_15835 damage-inducible protein
       CFBP5473_21575 DNA polymerase Y family protein
       CFBP5473_15830 DNA polymerase Y family protein
       CFBP5473_21580 dnaE; DNA polymerase III subunit alpha
       CFBP5473_15825 dnaE; DNA polymerase III subunit alpha
       CFBP5473_17830 recX; recombination regulator RecX
       CFBP5473_13505 ligase-associated DNA damage response DEXH box helicase
       CFBP5473_14655 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha
       CFBP5473_06745 vitamin B12-dependent ribonucleotide reductase
       CFBP5473_14650 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:3.1.-.- 3.6.4.12]
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:alf03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: June 1, 2020