DNA Repair and Recombination Proteins - Alligator mississippiensis (American alligator)

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         102566848 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         102563990 FEN1; flap structure-specific endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         109286522 flap endonuclease 1-like
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         102566879 LIG1; DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         102560160 XPA; XPA, DNA damage recognition and repair factor
         102571565 ERCC1; ERCC excision repair 1, endonuclease non-catalytic subunit
         102563394 ERCC4; ERCC excision repair 4, endonuclease catalytic subunit
         102577088 DNA repair protein complementing XP-G cells-like
         102566879 LIG1; DNA ligase 1
         102563811 MMS19; MMS19 homolog, cytosolic iron-sulfur assembly component
         102560971 CUL3; cullin 3
         102568223 CUL5; cullin 5
         102560183 ELOC; elongin C
         106737526 ELOB; elongin B
         102575667 transcription elongation factor B polypeptide 3
         102567303 ELOA; elongin A
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         102566848 PCNA; proliferating cell nuclear antigen
         102558039 EXO1; exonuclease 1
         102573973 HMGB1; high mobility group box 1
         102566879 LIG1; DNA ligase 1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: September 9, 2019