DNA Repair and Recombination Proteins - Acyrthosiphon pisum (pea aphid)

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     KO
 Eukaryotic Type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         100162681 proliferating cell nuclear antigen-like
K04802 PCNA; proliferating cell nuclear antigen 
         100160968 flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         100167056 DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         100158670 DNA repair protein complementing XP-A cells-like
         100162911 DNA excision repair protein ERCC-1
         100159509 LOW QUALITY PROTEIN: DNA repair endonuclease XPF
         100169397 DNA repair protein complementing XP-G cells homolog isoform X1
         100167056 DNA ligase 1
         100163333 MMS19 nucleotide excision repair protein homolog
         100159704 cullin-3-B
         100167349 cullin-3 isoform X1
         100571561 cullin-3-like
         100165766 cullin-5
         100145830 Elongin-c1; elongin C-like
         100159749 elongin C-like
         100165197 Tceb2; transcription elongation factor B polypeptide 2
         100573045 uncharacterized protein LOC100573045
         100165208 transcription elongation factor B polypeptide 3
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         100162681 proliferating cell nuclear antigen-like
         100159481 exonuclease 1
         100167132 high mobility group protein DSP1
         100167056 DNA ligase 1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic Type

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Last updated: June 5, 2019