DNA Repair and Recombination Proteins - Alligator sinensis (Chinese alligator)

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         102373511 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         102378534 FEN1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         102380268 LIG1; DNA ligase 1 isoform X4
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         102373971 XPA; DNA repair protein complementing XP-A cells
         102378728 ERCC1; DNA excision repair protein ERCC-1
         102384321 ERCC4; DNA repair endonuclease XPF
         102375922 DNA repair protein complementing XP-G cells isoform X2
         102380268 LIG1; DNA ligase 1 isoform X4
         102383076 MMS19; MMS19 nucleotide excision repair protein homolog
         102372631 CUL3; cullin-3 isoform X1
         102374192 CUL5; cullin-5 isoform X1
         102384075 ELOC; elongin-C
         102368331 ELOB; elongin-B
         102369732 elongin-A-like
         102385582 ELOA; elongin-A
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         102373511 PCNA; proliferating cell nuclear antigen
         102371474 EXO1; exonuclease 1
         102376428 HMGB1; high mobility group protein B1
         102380268 LIG1; DNA ligase 1 isoform X4
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: July 6, 2020