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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:bcv03030]
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03410 Base excision repair [PATH:bcv03410]
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03420 Nucleotide excision repair [PATH:bcv03420]
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03430 Mismatch repair [PATH:bcv03430]
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03440 Homologous recombination [PATH:bcv03440]
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03450 Non-homologous end-joining [PATH:bcv03450]
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 Bcav_0652 Ku protein
Bcav_0653 DNA polymerase LigD, polymerase domain protein
Bcav_4169 DNA primase small subunit
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:bcv03000]
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03021 Transcription machinery [BR:bcv03021]
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03019 Messenger RNA biogenesis [BR:bcv03019]
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03041 Spliceosome
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03011 Ribosome [BR:bcv03011]
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03009 Ribosome biogenesis [BR:bcv03009]
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03016 Transfer RNA biogenesis [BR:bcv03016]
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03012 Translation factors [BR:bcv03012]
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03110 Chaperones and folding catalysts [BR:bcv03110]
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04131 Membrane trafficking [BR:bcv04131]
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04121 Ubiquitin system [BR:bcv04121]
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03051 Proteasome [BR:bcv03051]
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03032 DNA replication proteins [BR:bcv03032]
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03036 Chromosome and associated proteins [BR:bcv03036]
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03400 DNA repair and recombination proteins [BR:bcv03400]
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Bcav_0779 methylated-DNA/protein-cysteinemethyltransferase
Bcav_4054 methylated-DNA/protein-cysteinemethyltransferase
Bcav_0813 uracil-DNA glycosylase
Bcav_2363 DNA-3-methyladenine glycosylase
Bcav_3282 HhH-GPD family protein
Bcav_1412 DNA-(apurinic or apyrimidinic site) lyase
Bcav_0846 type III restriction protein res subunit
Bcav_3865 NUDIX hydrolase
Bcav_3757 NUDIX hydrolase
Bcav_2398 NUDIX hydrolase
Bcav_2777 NUDIX hydrolase
Bcav_0640 NUDIX hydrolase
Bcav_1136 NUDIX hydrolase
Bcav_1537 NUDIX hydrolase
Bcav_1937 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Bcav_1028 Uracil-DNA glycosylase superfamily
Bcav_0132 DNA-3-methyladenine glycosylase I
Bcav_2873 DNA-formamidopyrimidine glycosylase
Bcav_1610 formamidopyrimidine-DNA glycosylase
Bcav_2454 DNA glycosylase/AP lyase, H2TH DNA-binding
Bcav_2985 exodeoxyribonuclease III Xth
Bcav_3648 exodeoxyribonuclease III Xth
Bcav_2685 Xylose isomerase domain protein TIM barrel
Bcav_1375 DNA ligase, NAD-dependent
Bcav_2200 DNA polymerase I
Bcav_2178 excinuclease ABC, A subunit
Bcav_2184 excinuclease ABC, B subunit
Bcav_2175 excinuclease ABC, C subunit
Bcav_4144 Excinuclease ABC C subunit domain protein
Bcav_2897 UvrD/REP helicase
Bcav_3026 ATP-dependent DNA helicase PcrA
Bcav_2901 UvrD/REP helicase
Bcav_3155 DNA-directed RNA polymerase, beta subunit
Bcav_3154 DNA-directed RNA polymerase, beta' subunit
Bcav_3113 DNA-directed RNA polymerase, alpha subunit
Bcav_2043 DNA-directed RNA polymerase, omega subunit
Bcav_1013 transcription-repair coupling factor
Bcav_1101 exodeoxyribonuclease VII, large subunit
Bcav_1100 exodeoxyribonuclease VII, small subunit
Bcav_2399 DNA polymerase III, alpha subunit
Bcav_0002 DNA polymerase III, beta subunit
Bcav_1739 DNA polymerase III, delta subunit
Bcav_0662 AAA ATPase
Bcav_3054 Exonuclease RNase T and DNA polymerase III
Bcav_1900 DNA polymerase III, epsilon subunit
Bcav_0548 DNA polymerase III, subunits gamma and tau
Bcav_4180 single-strand binding protein
Bcav_2643 single-strand binding protein
Bcav_2448 recA protein
Bcav_1993 Holliday junction DNA helicase RuvA
Bcav_1994 Holliday junction DNA helicase RuvB
Bcav_1992 crossover junction endodeoxyribonuclease RuvC
Bcav_2046 primosome assembly protein PriA
Bcav_3279 DNA repair protein RadA
Bcav_0004 DNA replication and repair protein RecF
Bcav_1600 DEAD/DEAH box helicase domain protein
Bcav_1766 DNA repair protein RecO
Bcav_0549 recombination protein RecR
Bcav_2355 DNA repair protein RecN
Bcav_1736 protein of unknown function DUF853 NPT hydrolase putative
Bcav_0652 Ku protein
Bcav_0653 DNA polymerase LigD, polymerase domain protein
Bcav_4169 DNA primase small subunit
Bcav_1928 DNA topoisomerase (ATP-hydrolyzing)
Bcav_0007 DNA gyrase, A subunit
Bcav_1922 DNA topoisomerase (ATP-hydrolyzing)
Bcav_0006 DNA gyrase, B subunit
Bcav_0657 DNA topoisomerase I
Bcav_1645 putative topoisomerase IB
Bcav_2752 histone family protein DNA-binding protein
Bcav_2394 ATP-dependent DNA helicase, RecQ family
Bcav_2424 DNA-directed DNA polymerase
Bcav_1021 DNA-directed DNA polymerase
Bcav_1036 DNA-directed DNA polymerase
Bcav_2433 SOS-response transcriptional repressor, LexA
Bcav_2288 DNA-repair protein
Bcav_2287 DNA polymerase III, alpha subunit
Bcav_2447 regulatory protein RecX
Bcav_2435 helicase c2
Bcav_2453 DEAD/H associated domain protein
Bcav_3427 NUDIX hydrolase
Bcav_2348 NUDIX hydrolase
Bcav_2192 NUDIX hydrolase
Bcav_0097 ribonucleoside-diphosphate reductase, alpha subunit
Bcav_0099 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:bcv03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Beutenbergia cavernae