DNA Repair and Recombination Proteins - Brassica rapa (field mustard)

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     KO
 Eukaryotic Type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         103868024 proliferating cellular nuclear antigen 1
K04802 PCNA; proliferating cell nuclear antigen 
         103844407 proliferating cellular nuclear antigen 1
K04802 PCNA; proliferating cell nuclear antigen 
         103843463 proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         103874470 flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         103843415 DNA ligase 1-like
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
         103831125 SP6; DNA ligase 6
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
         103871561 DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         103870844 DNA excision repair protein ERCC-1
         103864059 DNA repair endonuclease UVH1
         103875172 DNA repair protein UVH3
         103843415 DNA ligase 1-like
         103831125 SP6; DNA ligase 6
         103871561 DNA ligase 1
         103854514 MMS19 nucleotide excision repair protein homolog
         103835615 cullin-3A-like
         103840654 cullin-3A
         103845345 transcription elongation factor B polypeptide 1-like
         103856649 transcription elongation factor B polypeptide 1-like
         103858028 uncharacterized LOC103858028
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K03872 ELOC; elongin-C 
K03872 ELOC; elongin-C 
K15077 ELA1; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         103868024 proliferating cellular nuclear antigen 1
         103844407 proliferating cellular nuclear antigen 1
         103843463 proliferating cell nuclear antigen
         103835922 exonuclease 1
         103828950 exonuclease 1
         103841127 high mobility group B protein 1
         103860732 high mobility group B protein 1-like
         103843415 DNA ligase 1-like
         103831125 SP6; DNA ligase 6
         103871561 DNA ligase 1
K04802 PCNA; proliferating cell nuclear antigen 
K04802 PCNA; proliferating cell nuclear antigen 
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic Type

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Last updated: June 5, 2019