Messenger RNA Biogenesis - Caenorhabditis elegans (nematode)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
         CELE_Y39G8C.1 xrn-1; 5'-3' exoribonuclease 1
         CELE_T07D3.7 alg-2; Protein argonaute-2
         CELE_R09A1.1 ergo-1; Piwi-like protein ergo-1
         CELE_F48F7.1 alg-1; Protein argonaute-2
         CELE_C05D9.5 ife-4; Eukaryotic translation initiation factor 4E-4
         CELE_R04A9.4 ife-2; Eukaryotic translation initiation factor 4E-2
         CELE_Y57A10A.30 ife-5; Eukaryotic translation initiation factor 4E-5
         CELE_B0348.6 ife-3; Eukaryotic translation initiation factor 4E-3
         CELE_F53A2.6 ife-1; eIF-4F 25 kDa subunit
         CELE_C05C10.2 C05C10.2; DNA2/NAM7 helicase-like C-terminal domain-containing protein
         CELE_Y48G8AL.6 smg-2; Regulator of nonsense transcripts 1
         CELE_Y71H2AM.19 laf-1; ATP-dependent RNA helicase laf-1
         CELE_Y54E10A.9 vbh-1; RNA helicase
         CELE_C07H6.5 cgh-1; ATP-dependent RNA helicase cgh-1
         CELE_F53G12.5 mex-3; K Homology domain-containing protein
         CELE_Y18D10A.17 car-1; Protein LSM14 homolog car-1
         CELE_F46F11.2 cey-2; CSD domain-containing protein
         CELE_M01E11.5 cey-3; CSD domain-containing protein
         CELE_Y39A1C.3 cey-4; CSD domain-containing protein
         CELE_R06A4.4 imb-2; Importin N-terminal domain-containing protein
         CELE_C48B6.6 smg-1; Serine/threonine-protein kinase smg-1
         CELE_Y54F10AL.2 smg-6; PIN domain-containing protein
         CELE_Y73B6A.4 smg-7; DNA/RNA-binding domain-containing protein
         CELE_F02E9.2 lin-28; Protein lin-28
         CELE_M7.3 bcc-1; SAM domain-containing protein
         CELE_F42A6.7 hrpa-1; Heterogeneous nuclear ribonucleoprotein A1
         CELE_ZK909.2 kin-1; Protein kinase domain-containing protein
         CELE_R144.7 larp-1; La-related protein 1
K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K18749 LSM14; protein LSM14 
K09276 YBX1; Y-box-binding protein 1 
K09276 YBX1; Y-box-binding protein 1 
K09276 YBX1; Y-box-binding protein 1 
K18752 TNPO1; transportin-1 
K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
K14409 SMG7; protein SMG7 
K18754 LIN28; protein lin-28 
K18756 BICC1; protein bicaudal C 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K18757 LARP1; la-related protein 1 
       P-body specific factors
       Stress granule specific factors
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: April 9, 2024