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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:cfl03030]
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03410 Base excision repair [PATH:cfl03410]
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03420 Nucleotide excision repair [PATH:cfl03420]
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03430 Mismatch repair [PATH:cfl03430]
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03440 Homologous recombination [PATH:cfl03440]
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03450 Non-homologous end-joining [PATH:cfl03450]
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 Cfla_1902 Ku protein
Cfla_1903 DNA polymerase LigD, ligase domain protein
Cfla_0817 DNA ligase D, 3'-phosphoesterase domain protein
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:cfl03000]
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03021 Transcription machinery [BR:cfl03021]
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03019 Messenger RNA biogenesis [BR:cfl03019]
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03041 Spliceosome
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03011 Ribosome [BR:cfl03011]
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03009 Ribosome biogenesis [BR:cfl03009]
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03016 Transfer RNA biogenesis [BR:cfl03016]
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03012 Translation factors [BR:cfl03012]
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03110 Chaperones and folding catalysts [BR:cfl03110]
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04131 Membrane trafficking [BR:cfl04131]
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04121 Ubiquitin system [BR:cfl04121]
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03051 Proteasome [BR:cfl03051]
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03032 DNA replication proteins [BR:cfl03032]
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03036 Chromosome and associated proteins [BR:cfl03036]
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03400 DNA repair and recombination proteins [BR:cfl03400]
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Cfla_2418 methylated-DNA/protein-cysteinemethyltransferase
Cfla_1911 methylated-DNA/protein-cysteinemethyltransferase
Cfla_1122 Deoxyribodipyrimidine photo-lyase
Cfla_0685 uracil-DNA glycosylase
Cfla_1651 DNA-3-methyladenine glycosylase
Cfla_0563 HhH-GPD family protein
Cfla_3093 endonuclease III
Cfla_0725 helicase domain protein
Cfla_1347 NUDIX hydrolase
Cfla_0097 NUDIX hydrolase
Cfla_0514 NUDIX hydrolase
Cfla_2246 NUDIX hydrolase
Cfla_1033 NUDIX hydrolase
Cfla_2862 NUDIX hydrolase
Cfla_1703 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Cfla_3233 Uracil-DNA glycosylase superfamily
Cfla_2419 AlkA domain protein
Cfla_0108 DNA-3-methyladenine glycosylase I
Cfla_2292 formamidopyrimidine-DNA glycosylase
Cfla_1504 DNA-formamidopyrimidine glycosylase
Cfla_1540 DNA-(apurinic or apyrimidinic site) lyase
Cfla_3158 DNA glycosylase/AP lyase, H2TH DNA-binding protein
Cfla_0549 exodeoxyribonuclease III Xth
Cfla_2498 exodeoxyribonuclease III Xth
Cfla_0680 apurinic endonuclease Apn1
Cfla_1113 DNA ligase, NAD-dependent
Cfla_1969 DNA polymerase I
Cfla_1949 excinuclease ABC, A subunit
Cfla_1957 excinuclease ABC, B subunit
Cfla_1947 excinuclease ABC, C subunit
Cfla_2469 UvrD/REP helicase
Cfla_2473 UvrD/REP helicase
Cfla_2539 ATP-dependent DNA helicase PcrA
Cfla_2854 UvrD/REP helicase
Cfla_2667 DNA-directed RNA polymerase, beta subunit
Cfla_2666 DNA-directed RNA polymerase, beta' subunit
Cfla_2626 DNA-directed RNA polymerase, alpha subunit
Cfla_1851 DNA-directed RNA polymerase, omega subunit
Cfla_0898 transcription-repair coupling factor
Cfla_0968 exodeoxyribonuclease VII, large subunit
Cfla_1606 DNA polymerase III, alpha subunit
Cfla_0002 DNA polymerase III, beta subunit
Cfla_2228 DNA polymerase III, delta subunit
Cfla_0576 DNA polymerase III, delta prime subunit
Cfla_2071 DNA polymerase III, epsilon subunit
Cfla_3125 DNA polymerase III, subunits gamma and tau
Cfla_1351 single-strand binding protein
Cfla_3699 single-strand binding protein
Cfla_2429 Exodeoxyribonuclease V
Cfla_2428 exodeoxyribonuclease V, gamma subunit
Cfla_2430 exodeoxyribonuclease V, alpha subunit
Cfla_1545 recA protein
Cfla_1795 Holliday junction DNA helicase RuvA
Cfla_1796 Holliday junction DNA helicase RuvB
Cfla_1794 crossover junction endodeoxyribonuclease RuvC
Cfla_1854 primosomal protein N' (replication factor Y) - superfamily II helicase-like protein
Cfla_0124 putative exonuclease
Cfla_0123 nuclease SbcCD, D subunit
Cfla_3282 metallophosphoesterase
Cfla_0566 DNA repair protein RadA
Cfla_0004 DNA replication and repair protein RecF
Cfla_3256 putative transcriptional regulator
Cfla_2304 DEAD/DEAH box helicase domain protein
Cfla_2189 DNA repair protein RecO
Cfla_3124 recombination protein RecR
Cfla_1659 DNA repair protein RecN
Cfla_2235 protein of unknown function DUF853 NPT hydrolase putative
Cfla_1902 Ku protein
Cfla_1903 DNA polymerase LigD, ligase domain protein
Cfla_0817 DNA ligase D, 3'-phosphoesterase domain protein
Cfla_0007 DNA gyrase, A subunit
Cfla_1693 DNA topoisomerase (ATP-hydrolyzing)
Cfla_0006 DNA gyrase, B subunit
Cfla_2055 DNA topoisomerase (ATP-hydrolyzing)
Cfla_0571 DNA topoisomerase I
Cfla_1357 putative viral-like DNA topoisomerase
Cfla_1900 histone family protein DNA-binding protein
Cfla_1612 ATP-dependent DNA helicase, RecQ family
Cfla_1249 ATP-dependent DNA helicase, RecQ family
Cfla_2981 ATP-dependent DNA helicase RecQ
Cfla_0076 DNA-directed DNA polymerase
Cfla_2023 DNA-directed DNA polymerase
Cfla_1566 transcriptional repressor, LexA family
Cfla_2039 conserved hypothetical protein
Cfla_2038 DNA polymerase III, alpha subunit
Cfla_1546 regulatory protein RecX
Cfla_1563 helicase c2
Cfla_1541 DEAD/H associated domain protein
Cfla_2816 NUDIX hydrolase
Cfla_1665 NUDIX hydrolase
Cfla_0448 ribonucleoside-diphosphate reductase, alpha subunit
Cfla_0450 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:cfl03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Cellulomonas flavigena