DNA Repair and Recombination Proteins - Citrus sinensis (Valencia orange)

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         102627400 proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         102618340 flap endonuclease 1 isoform X3
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         102628869 DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
         102618631 DNA ligase 6 isoform X1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         102623615 DNA excision repair protein ERCC-1
         102612338 DNA excision repair protein ERCC-1-like isoform X1
         102624221 DNA repair endonuclease UVH1 isoform X1
         102606724 DNA repair protein UVH3 isoform X1
         102628869 DNA ligase 1
         102618631 DNA ligase 6 isoform X1
         102610725 MMS19 nucleotide excision repair protein homolog isoform X2
         102622384 cullin-3A
         102630361 cullin-3B-like
         102614386 elongin-C
         102629354 transcription elongation factor B polypeptide 3
         102627145 transcription elongation factor B polypeptide 3-like
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K03872 ELOC; elongin-C 
K15077 ELA1; elongin-A 
K15077 ELA1; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         102627400 proliferating cell nuclear antigen
         102615179 exonuclease 1
         102616157 exonuclease 1
         107175455 exonuclease 1-like
         102577961 HMG; group B HMG-box protein
         102617532 high mobility group B protein 7-like
         102627764 high mobility group B protein 1-like
         102628869 DNA ligase 1
         102618631 DNA ligase 6 isoform X1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: September 9, 2019