Messenger RNA Biogenesis - Callithrix jacchus (white-tufted-ear marmoset)

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     KO 
 Eukaryotic type

   mRNA processing factors

   mRNA surveillance and transport factors

     Transport factors

     Surveillance factors

     Factors involved in mRNA localization

     mRNA cycle factors

       Common to processing body (P body) and stress granule

         100412678 XRN1; 5'-3' exoribonuclease 1 isoform X7
         100390940 AGO2; protein argonaute-2 isoform X2
         100389074 AGO4; protein argonaute-4 isoform X1
         100387270 AGO3; protein argonaute-3 isoform X1
         100386910 AGO1; protein argonaute-1 isoform X2
         100395777 EIF4E; eukaryotic translation initiation factor 4E isoform X5
         100415426 EIF4E1B; eukaryotic translation initiation factor 4E type 1B
         100401386 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1
         100388434 UPF1; regulator of nonsense transcripts 1 isoform X1
         100387734 DDX3Y; ATP-dependent RNA helicase DDX3Y
         100399667 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1
         100408438 DDX6; probable ATP-dependent RNA helicase DDX6
         100410023 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C
         100410413 MEX3A; RNA-binding protein MEX3A
         100400135 MEX3D; LOW QUALITY PROTEIN: RNA-binding protein MEX3D
         100403790 MEX3B; RNA-binding protein MEX3B
         100409995 FASTK; fas-activated serine/threonine kinase isoform X1
         100391071 LOW QUALITY PROTEIN: fas-activated serine/threonine kinase-like
         100390973 LSM14B; protein LSM14 homolog B isoform X1
         100411266 LSM14A; protein LSM14 homolog A isoform X1
         118154007 LOW QUALITY PROTEIN: protein LSM14 homolog A-like
         100388387 poly(rC)-binding protein 1 isoform X2
         100405918 PCBP1; poly(rC)-binding protein 1
         103788804 poly(rC)-binding protein 1-like
         100409398 PCBP2; poly(rC)-binding protein 2 isoform X3
         100391375 LOW QUALITY PROTEIN: poly(rC)-binding protein 2-like
         100392590 poly(rC)-binding protein 2-like
         100401646 YBX1; Y-box-binding protein 1 isoform X1
         100402964 LOW QUALITY PROTEIN: Y-box-binding protein 1-like
         100399549 WTIP; Wilms tumor protein 1-interacting protein
         100392345 AJUBA; LIM domain-containing protein ajuba isoform X1
         100394908 LIMD1; LIM domain-containing protein 1
         100394516 APOBEC1; C->U-editing enzyme APOBEC-1 isoform X2
         100397263 APOBEC3C; LOW QUALITY PROTEIN: DNA dC->dU-editing enzyme APOBEC-3C
         100413502 DNA dC->dU-editing enzyme APOBEC-3G-like
         100393962 DNA dC->dU-editing enzyme APOBEC-3G
         100412309 APOBEC3H; DNA dC->dU-editing enzyme APOBEC-3H isoform X1
         100413381 DNA dC->dU-editing enzyme APOBEC-3G
         100397628 APOBEC3G; DNA dC->dU-editing enzyme APOBEC-3G
         100386727 DNA dC->dU-editing enzyme APOBEC-3G
         100387905 APOBEC3A; DNA dC->dU-editing enzyme APOBEC-3A
         100412662 DNA dC->dU-editing enzyme APOBEC-3G isoform X1
         128929074 DNA dC->dU-editing enzyme APOBEC-3G-like
         100396313 MOV10; helicase MOV-10 isoform X1
         100398839 proline-rich nuclear receptor coactivator 2-like
         100896925 PNRC2; proline-rich nuclear receptor coactivator 2
         128932030 proline-rich nuclear receptor coactivator 2-like
         100413875 TNPO1; transportin-1 isoform X1
         100410734 SMG1; serine/threonine-protein kinase SMG1 isoform X4
         100403998 SMG5; nonsense-mediated mRNA decay factor SMG5 isoform X1
         100395317 SMG6; telomerase-binding protein EST1A isoform X1
         100399275 SMG7; nonsense-mediated mRNA decay factor SMG7 isoform X7
         100397247 ZFP36; mRNA decay activator protein ZFP36
         100386590 ZFP36L2; mRNA decay activator protein ZFP36L2
         100405281 ZFP36L1; mRNA decay activator protein ZFP36L1
         100388273 protein lin-28 homolog A-like
         100405014 LIN28A; protein lin-28 homolog A
         100400137 LIN28B; protein lin-28 homolog B isoform X1
         100406610 protein lin-28 homolog A-like
         118143095 protein lin-28 homolog A
         100403524 HTT; huntingtin
         100399463 IPO8; importin-8 isoform X1
         100412529 BICC1; protein bicaudal C homolog 1 isoform X3
         100392244 heterogeneous nuclear ribonucleoprotein A1-like
         100403489 heterogeneous nuclear ribonucleoprotein A1-like
         100410389 heterogeneous nuclear ribonucleoprotein A1-like
         100411573 heterogeneous nuclear ribonucleoprotein A3 isoform X1
         100409067 heterogeneous nuclear ribonucleoprotein A1
         100415175 heterogeneous nuclear ribonucleoprotein A1-like
         100407564 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1
         100414716 heterogeneous nuclear ribonucleoprotein A1-like
         100385123 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform X1
         100413569 heterogeneous nuclear ribonucleoprotein A1-like
         100413454 heterogeneous nuclear ribonucleoprotein A1
         100385748 heterogeneous nuclear ribonucleoprotein A1-like
         100385762 heterogeneous nuclear ribonucleoprotein A1-like
         100386652 heterogeneous nuclear ribonucleoprotein A1-like
         100895835 heterogeneous nuclear ribonucleoprotein A1-like
         103796241 heterogeneous nuclear ribonucleoprotein A1-like
         108588388 heterogeneous nuclear ribonucleoprotein A1-like 3
         108588454 heterogeneous nuclear ribonucleoprotein A1
         108591245 heterogeneous nuclear ribonucleoprotein A1 isoform X2
         118142886 heterogeneous nuclear ribonucleoprotein A1
         118143590 heterogeneous nuclear ribonucleoprotein A3-like isoform X1
         118148454 heterogeneous nuclear ribonucleoprotein A1-like isoform X1
         118153440 heterogeneous nuclear ribonucleoprotein A1-like
         128928150 heterogeneous nuclear ribonucleoprotein A1-like
         128930023 heterogeneous nuclear ribonucleoprotein A1-like
         128932351 heterogeneous nuclear ribonucleoprotein A1-like
         128932643 heterogeneous nuclear ribonucleoprotein A1-like
         100392123 PRKACG; LOW QUALITY PROTEIN: cAMP-dependent protein kinase catalytic subunit gamma
         100408115 cAMP-dependent protein kinase catalytic subunit gamma-like
         100407692 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X1
         100400737 PRKACA; LOW QUALITY PROTEIN: cAMP-dependent protein kinase catalytic subunit alpha
         100409206 cAMP-dependent protein kinase catalytic subunit gamma-like
         118151333 cAMP-dependent protein kinase catalytic subunit alpha-like
         100393120 LARP1; la-related protein 1 isoform X3
         100407405 LARP1B; la-related protein 1B isoform X1
         100386696 ATXN2L; ataxin-2-like protein isoform X1
         100410598 ATXN2; ataxin-2 isoform X21

K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K14326 UPF1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] 
K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8] 
K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8] 
K18749 LSM14; protein LSM14 
K18749 LSM14; protein LSM14 
K18749 LSM14; protein LSM14 
K12889 PCBP1; poly(rC)-binding protein 1 
K12889 PCBP1; poly(rC)-binding protein 1 
K12889 PCBP1; poly(rC)-binding protein 1 
K13162 PCBP2; poly(rC)-binding protein 2 
K13162 PCBP2; poly(rC)-binding protein 2 
K13162 PCBP2; poly(rC)-binding protein 2 
K09276 YBX1; Y-box-binding protein 1 
K09276 YBX1; Y-box-binding protein 1 
K16682 AJUBA; LIM domain-containing protein 
K16682 AJUBA; LIM domain-containing protein 
K16682 AJUBA; LIM domain-containing protein 
K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] 
K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
K18752 TNPO1; transportin-1 
K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
K11125 SMG5; protein SMG5 
K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
K14409 SMG7; protein SMG7 
K15308 TTP; tristetraprolin 
K18753 ZFP36L; butyrate response factor 
K18753 ZFP36L; butyrate response factor 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K04533 HD; huntingtin 
K18755 IPO8; importin-8 
K18756 BICC1; protein bicaudal C 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K18757 LARP1; la-related protein 1 
K18757 LARP1; la-related protein 1 
K23625 ATXN2_2L; ataxin 2/2L 
K23625 ATXN2_2L; ataxin 2/2L 

       P-body specific factors

       Stress granule specific factors

   mRNA degradation factors

 





 Prokaryotic type













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Last updated: April 9, 2024