KEGG Orthology (KO) - Desulfitobacterium dichloroeliminans

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:ddl03030]
     03410 Base excision repair [PATH:ddl03410]
     03420 Nucleotide excision repair [PATH:ddl03420]
     03430 Mismatch repair [PATH:ddl03430]
     03440 Homologous recombination [PATH:ddl03440]
     03450 Non-homologous end-joining [PATH:ddl03450]
       Desdi_2685 Ku protein
       Desdi_2684 ATP-dependent DNA ligase LigD polymerase module
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:ddl03000]
     03021 Transcription machinery [BR:ddl03021]
     03019 Messenger RNA biogenesis [BR:ddl03019]
     03041 Spliceosome
     03011 Ribosome [BR:ddl03011]
     03009 Ribosome biogenesis [BR:ddl03009]
     03016 Transfer RNA biogenesis [BR:ddl03016]
     03012 Translation factors [BR:ddl03012]
     03110 Chaperones and folding catalysts [BR:ddl03110]
     04131 Membrane trafficking [BR:ddl04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:ddl03051]
     03032 DNA replication proteins [BR:ddl03032]
     03036 Chromosome and associated proteins [BR:ddl03036]
     03400 DNA repair and recombination proteins [BR:ddl03400]
       Desdi_1054 O-6-methylguanine DNA methyltransferase
       Desdi_1554 Uracil-DNA glycosylase
       Desdi_3139 A/G-specific DNA-adenine glycosylase
       Desdi_2133 endonuclease III
       Desdi_1557 ADP-ribose pyrophosphatase
       Desdi_2570 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
       Desdi_2251 HhH-GPD superfamily base excision DNA repair protein
       Desdi_1603 formamidopyrimidine-DNA glycosylase Fpg
       Desdi_3320 exodeoxyribonuclease III
       Desdi_2608 endonuclease IV
       Desdi_2511 single-stranded-DNA-specific exonuclease RecJ
       Desdi_1259 DNA ligase
       Desdi_1602 DNA polymerase I
       Desdi_3394 excinuclease ABC
       Desdi_0994 putative endonuclease
       Desdi_2121 Excinuclease ABC subunit C
       Desdi_0126 DNA/RNA helicase
       Desdi_1765 DNA/RNA helicase
       Desdi_1257 ATP-dependent DNA helicase PcrA
       Desdi_0475 DNA/RNA helicase
       Desdi_0427 DNA-directed RNA polymerase subunit beta
       Desdi_0428 DNA-directed RNA polymerase subunit beta'
       Desdi_0463 DNA-directed RNA polymerase
       Desdi_3468 DNA-directed RNA polymerase
       Desdi_2747 DNA-directed RNA polymerase subunit omega
       Desdi_0064 transcription-repair coupling factor Mfd
       Desdi_1866 DNA mismatch repair protein MutS
       Desdi_0184 DNA mismatch repair protein
       Desdi_1863 DNA mismatch repair protein MutL
       Desdi_2421 Exodeoxyribonuclease VII large subunit
       Desdi_2420 exonuclease VII small subunit
       Desdi_1592 DNA-directed DNA polymerase III PolC
       Desdi_0827 DNA polymerase III
       Desdi_0003 DNA polymerase III
       Desdi_3022 DNA polymerase III
       Desdi_0030 hypothetical protein
       Desdi_0020 DNA polymerase III
       Desdi_3514 single-stranded DNA-binding protein
       Desdi_1275 site-specific DNA methylase
       Desdi_1316 site-specific DNA methylase
       Desdi_3340 DNA adenine methylase Dam
       Desdi_1702 DNA adenine methylase Dam
       Desdi_1710 site-specific DNA methylase
       Desdi_2175 protein RecA
       Desdi_2526 Holliday junction DNA helicase subunit RuvA
       Desdi_2525 Holliday junction DNA helicase subunit RuvB
       Desdi_2527 Holliday junction endonuclease RuvC
       Desdi_2740 replication restart DNA helicase PriA
       Desdi_0556 ATPase involved in DNA repair
       Desdi_0555 Exodeoxyribonuclease I subunit D
       Desdi_0403 DNA repair protein RadA
       Desdi_0004 DNA replication and repair protein RecF
       Desdi_2720 ATP-dependent DNA helicase RecG
       Desdi_2987 DNA replication and repair protein RecO
       Desdi_0022 DNA replication and repair protein RecR
       Desdi_2411 DNA replication and repair protein RecN
       Desdi_1949 ATP-dependent exonuclase V beta subunit
       Desdi_1950 DNA helicase/exodeoxyribonuclease V
       Desdi_2685 Ku protein
       Desdi_2684 ATP-dependent DNA ligase LigD polymerase module
       Desdi_0007 DNA gyrase subunit A
       Desdi_0006 DNA gyrase subunit B
       Desdi_1830 type IIA topoisomerase (DNA gyrase/topo II
       Desdi_2604 DNA topoisomerase I
       Desdi_0068 bacterial nucleoid DNA-binding protein
       Desdi_2014 ATP-dependent DNA helicase
       Desdi_0382 nucleotidyltransferase/DNA polymerase involved in DNA repair
       Desdi_0931 nucleotidyltransferase/DNA polymerase involved in DNA repair
       Desdi_1853 SOS-response transcriptional repressor
       Desdi_2174 hypothetical protein
       Desdi_2108 DnaQ family exonuclease/DinG family helicase
       Desdi_0256 ribonucleoside-diphosphate reductase class II
       Desdi_2578 exopolyphosphatase-like enzyme
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:3.1.-.- 3.6.4.12]
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:ddl03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: June 18, 2019