KEGG Orthology (KO) - Glaciecola sp. 4H-3-7+YE-5

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:gag03030]
     03410 Base excision repair [PATH:gag03410]
       Glaag_0056 formamidopyrimidine-DNA glycosylase
       Glaag_1354 endonuclease III
       Glaag_3855 transcriptional regulator
       Glaag_0010 DNA-3-methyladenine glycosylase I
       Glaag_3559 uracil-DNA glycosylase
       Glaag_0081 A/G-specific adenine glycosylase
       Glaag_1626 exodeoxyribonuclease III
       Glaag_0015 DNA polymerase I
       Glaag_3703 single-stranded-DNA-specific exonuclease RecJ
       Glaag_1758 DNA ligase
       Glaag_0078 DNA ligase (ATP)
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
     03420 Nucleotide excision repair [PATH:gag03420]
     03430 Mismatch repair [PATH:gag03430]
     03440 Homologous recombination [PATH:gag03440]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:gag03000]
     03021 Transcription machinery [BR:gag03021]
     03019 Messenger RNA biogenesis [BR:gag03019]
     03041 Spliceosome
     03011 Ribosome [BR:gag03011]
     03009 Ribosome biogenesis [BR:gag03009]
     03016 Transfer RNA biogenesis [BR:gag03016]
     03012 Translation factors [BR:gag03012]
     03110 Chaperones and folding catalysts [BR:gag03110]
     04131 Membrane trafficking [BR:gag04131]
     04121 Ubiquitin system [BR:gag04121]
     03051 Proteasome [BR:gag03051]
     03032 DNA replication proteins [BR:gag03032]
     03036 Chromosome and associated proteins [BR:gag03036]
     03400 DNA repair and recombination proteins [BR:gag03400]
       Glaag_3856 methylated-DNA/protein-cysteine methyltransferase
       Glaag_2086 Deoxyribodipyrimidine photo-lyase
       Glaag_3559 uracil-DNA glycosylase
       Glaag_0081 A/G-specific adenine glycosylase
       Glaag_1354 endonuclease III
       Glaag_0078 DNA ligase (ATP)
       Glaag_0854 mutator MutT protein
       Glaag_3295 NUDIX hydrolase
       Glaag_3720 NUDIX hydrolase
       Glaag_4042 NUDIX hydrolase
       Glaag_3855 transcriptional regulator
       Glaag_0010 DNA-3-methyladenine glycosylase I
       Glaag_0056 formamidopyrimidine-DNA glycosylase
       Glaag_1626 exodeoxyribonuclease III
       Glaag_3703 single-stranded-DNA-specific exonuclease RecJ
       Glaag_1758 DNA ligase
       Glaag_0015 DNA polymerase I
       Glaag_1820 excinuclease ABC
       Glaag_4162 excinuclease ABC
       Glaag_1362 excinuclease ABC
       Glaag_2499 excinuclease ABC
       Glaag_0206 DNA helicase II
       Glaag_4566 UvrD/REP helicase
       Glaag_0670 DNA-directed RNA polymerase
       Glaag_0671 DNA-directed RNA polymerase
       Glaag_3394 DNA-directed RNA polymerase
       Glaag_0439 DNA-directed RNA polymerase
       Glaag_2604 transcription-repair coupling factor
       Glaag_1090 DNA mismatch repair protein MutS
       Glaag_0315 DNA mismatch repair protein MutL
       Glaag_3826 DNA mismatch repair endonuclease mutH
       Glaag_2093 Exodeoxyribonuclease I
       Glaag_1211 exodeoxyribonuclease VII
       Glaag_3079 exodeoxyribonuclease VII
       Glaag_3139 DNA polymerase III
       Glaag_0002 DNA polymerase III
       Glaag_3545 DNA-directed DNA polymerase
       Glaag_2766 DNA polymerase III
       Glaag_2151 DNA-directed DNA polymerase
       Glaag_0605 Exonuclease RNase T and DNA polymerase III
       Glaag_2002 DNA polymerase III
       Glaag_2018 DNA polymerase III
       Glaag_2555 Exonuclease RNase T and DNA polymerase III
       Glaag_1426 DNA polymerase III
       Glaag_4160 single-strand binding protein
       Glaag_0729 DNA adenine methylase
       Glaag_1739 exodeoxyribonuclease V
       Glaag_1738 exodeoxyribonuclease V
       Glaag_1740 exodeoxyribonuclease V
       Glaag_1095 recA protein
       Glaag_1381 Holliday junction DNA helicase RuvA
       Glaag_1382 Holliday junction DNA helicase RuvB
       Glaag_1380 crossover junction endodeoxyribonuclease RuvC
       Glaag_4067 primosomal protein N'
       Glaag_4272 hypothetical protein
       Glaag_0910 SMC domain protein
       Glaag_2687 protein of unknown function DUF349
       Glaag_0911 nuclease SbcCD
       Glaag_3122 DNA repair protein RadA
       Glaag_0003 DNA replication and repair protein RecF
       Glaag_0444 ATP-dependent DNA helicase RecG
       Glaag_3701 DNA repair protein RecO
       Glaag_1428 recombination protein RecR
       Glaag_2615 DNA repair protein RecN
       Glaag_3357 exonuclease RdgC
       Glaag_4582 hypothetical protein
       Glaag_0902 type III restriction protein res subunit
       Glaag_2521 DNA gyrase
       Glaag_0004 DNA gyrase
       Glaag_2010 DNA topoisomerase I
       Glaag_2928 DNA topoisomerase I catalytic core domain protein
       Glaag_4392 histone family protein DNA-binding protein
       Glaag_1199 histone family protein DNA-binding protein
       Glaag_0182 transcriptional regulator
       Glaag_2545 integration host factor
       Glaag_2516 integration host factor
       Glaag_0164 ATP-dependent DNA helicase RecQ
       Glaag_0688 ATP-dependent DNA helicase
       Glaag_2118 histone family protein nucleoid-structuring protein H-NS
       Glaag_0531 DNA-directed DNA polymerase
       Glaag_4333 UMUC domain protein DNA-repair protein
       Glaag_4326 Peptidase S24/S26A/S26B
       Glaag_4206 transcriptional repressor
       Glaag_3623 DNA polymerase B region
       Glaag_0035 hypothetical protein
       Glaag_0034 DNA polymerase III
       Glaag_1312 regulatory protein RecX
       Glaag_0075 ATP-dependent DNA helicase Rep
       Glaag_2387 UvrD/REP helicase
       Glaag_2862 helicase c2
       Glaag_2524 ribonucleoside-diphosphate reductase
       Glaag_2525 Ribonucleoside-diphosphate reductase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03658 helD; DNA helicase IV [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:gag03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: July 3, 2020