KEGG Orthology (KO) - Geobacter daltonii FRC-32

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:geo03030]
     03410 Base excision repair [PATH:geo03410]
     03420 Nucleotide excision repair [PATH:geo03420]
     03430 Mismatch repair [PATH:geo03430]
     03440 Homologous recombination [PATH:geo03440]
     03450 Non-homologous end-joining [PATH:geo03450]
       Geob_0337 DNA-binding Ku protein
       Geob_0336 ligD; DNA ligase D, ATP-dependent
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:geo03000]
     03021 Transcription machinery [BR:geo03021]
     03019 Messenger RNA biogenesis [BR:geo03019]
     03041 Spliceosome
     03011 Ribosome [BR:geo03011]
     03009 Ribosome biogenesis [BR:geo03009]
     03016 Transfer RNA biogenesis [BR:geo03016]
     03012 Translation factors [BR:geo03012]
     03110 Chaperones and folding catalysts [BR:geo03110]
     04131 Membrane trafficking [BR:geo04131]
     04121 Ubiquitin system [BR:geo04121]
     03051 Proteasome [BR:geo03051]
     03032 DNA replication proteins [BR:geo03032]
     03036 Chromosome and associated proteins [BR:geo03036]
     03400 DNA repair and recombination proteins [BR:geo03400]
       Geob_1878 ogt; methylated DNA--protein cysteine S-methyltransferase
       Geob_1689 aag; 3-methyladenine-DNA glycosylase
       Geob_3733 hypothetical protein
       Geob_2394 endonuclease III-related DNA glycosidase
       Geob_2572 DNA helicase
       Geob_3053 NUDIX hydrolase
       Geob_2829 NUDIX hydrolase
       Geob_0660 NUDIX hydrolase
       Geob_1125 NUDIX hydrolase
       Geob_3779 NUDIX hydrolase
       Geob_2699 dut; deoxyuridine-5'-triphosphate pyrophosphohydrolase
       Geob_3525 uracil-DNA glycosylase
       Geob_1575 mutM-1; formamidopyrimidine-DNA glycosylase
       Geob_0290 mutM-2; formamidopyrimidine-DNA glycosylase
       Geob_1397 nfo; endodeoxyribonuclease IV
       Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ
       Geob_1970 ligA; DNA ligase, NAD-dependent
       Geob_1408 polA; DNA polymerase I
       Geob_3812 uvrA; excinuclease ABC, A subunit
       Geob_1232 uvrB; excinuclease ABC, B subunit
       Geob_1305 uvrC; excinuclease ABC, C subunit
       Geob_1974 rep; ATP-dependent DNA helicase Rep
       Geob_0379 pcrA; ATP-dependent DNA helicase PcrA
       Geob_3632 rpoB; DNA-directed RNA polymerase, beta subunit
       Geob_3631 rpoC; DNA-directed RNA polymerase, beta-prime subunit
       Geob_3599 rpoA; DNA-directed RNA polymerase, alpha subunit
       Geob_2144 rpoZ; DNA-directed RNA polymerase, omega subunit
       Geob_3711 mfd; transcription-repair coupling factor
       Geob_2761 mutS-1; DNA mismatch repair ATPase MutS-1
       Geob_1751 mutS-2; endonuclease and ATPase MutS-2
       Geob_3108 mutL; DNA mismatch repair protein MutL
       Geob_2626 xseA; exodeoxyribonuclease VII, large subunit
       Geob_2627 xseB; exodeoxyribonuclease VII, small subunit
       Geob_3293 dnaE; DNA polymerase III, alpha subunit
       Geob_0002 dnaN; DNA polymerase III, beta subunit
       Geob_2173 holA; DNA polymerase III, delta subunit
       Geob_2151 holB; DNA polymerase III, delta-prime subunit
       Geob_0378 dnaX; DNA polymerase III, gamma and tau subunits
       Geob_3793 ssb; single-strand-binding protein
       Geob_0709 DNA G:T-mismatch repair endonuclease Vsr
       Geob_1389 recB; exodeoxyribonuclease V, beta subunit
       Geob_1390 recC; exodeoxyribonuclease V, gamma subunit
       Geob_1388 recD; exodeoxyribonuclease V, alpha subunit
       Geob_1115 recA; recombinase A
       Geob_2324 ruvA; Holliday junction DNA helicase RuvA
       Geob_2323 ruvB; Holliday junction DNA helicase RuvB
       Geob_2325 ruvC; crossover junction endodeoxyribonuclease RuvC
       Geob_1312 priA; primosomal protein N', ATP-dependent helicase
       Geob_3181 sbcC; DNA repair exonuclease SbcCD, C subunit, putative
       Geob_3183 sbcD; DNA repair exonuclease SbcCD, D subunit, putative
       Geob_3703 radA; DNA repair protein RadA
       Geob_0003 recF; DNA replication and repair protein RecF
       Geob_2607 recG; ATP-dependent DNA helicase RecG
       Geob_1747 recO; DNA repair protein RecO
       Geob_0376 recR; recombination protein RecR
       Geob_3460 recN; DNA repair ATPase RecN
       Geob_3410 cas1; CRISPR-associated endodeoxyribonuclease Cas1
       Geob_0337 DNA-binding Ku protein
       Geob_0336 ligD; DNA ligase D, ATP-dependent
       Geob_0005 gyrA; DNA gyrase, A subunit
       Geob_0004 gyrB; DNA gyrase, B subunit
       Geob_1558 topA; DNA topoisomerase I
       Geob_3817 hup-1; histone-like protein
       Geob_3359 ihfA-1; integration host factor, alpha subunit
       Geob_2365 ihfB-2; integration host factor, beta subunit
       Geob_2788 ihfB-1; integration host factor, beta subunit
       Geob_0406 recQ; ATP-dependent DNA helicase RecQ
       Geob_3171 DNA polymerase IV
       Geob_1535 helix-turn-helix transcriptional regulator
       Geob_1117 recX; recombination regulator RecX
       Geob_1150 DNA polymerase IV (family X) domain and PHP phosphoesterase domain protein PRK08609
       Geob_0618 dinG; ATP-dependent DNA helicase DinG
       Geob_3024 nrdJ; ribonucleoside-5'-diphosphate reductase, adenosylcobamide-dependent
       Geob_2694 phosphoesterase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:geo03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: September 22, 2020