Messenger RNA Biogenesis - Lates calcarifer (barramundi perch)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
       P-body specific factors
       Stress granule specific factors
         108878468 cytotoxic granule associated RNA binding protein TIA1 isoform X1
         108886239 nucleolysin TIAR isoform X1
         108895438 cytotoxic granule associated RNA binding protein TIA1 isoform X1
         108889490 embryonic polyadenylate-binding protein isoform X1
         108898001 LOW QUALITY PROTEIN: polyadenylate-binding protein 4
         108898133 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
         108876275 polyadenylate-binding protein 1A
         108881820 LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 2
         108889873 double-stranded RNA-binding protein Staufen homolog 1 isoform X1
         108890331 fragile X mental retardation syndrome-related protein 1 isoform X1
         108882021 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1
         108878960 synaptic functional regulator FMR1
         108874011 ELAV-like protein 1 isoform X1
         108874872 elavl1a; ELAV-like protein 1 isoform X3
         108882476 ras GTPase-activating protein-binding protein 1
         108873398 LOW QUALITY PROTEIN: ras GTPase-activating protein-binding protein 2
         108902923 eukaryotic translation initiation factor 2A
         108888456 eif3ba; eukaryotic translation initiation factor 3, subunit Ba
         108883758 eukaryotic initiation factor 4A-II
         108895244 eukaryotic initiation factor 4A-I
         108882299 eukaryotic initiation factor 4A-III
         108884039 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1
         108880858 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b
         108888194 eukaryotic translation initiation factor 4 gamma 1 isoform X1
         108883466 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X5
         108874579 eif4g2a; eukaryotic translation initiation factor 4 gamma 2
         108902520 eif4g3a; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 3
         108885025 LOW QUALITY PROTEIN: ribosomal protein S6 kinase alpha-3
         108874981 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1
         108882757 rps6kal; ribosomal protein S6 kinase alpha-6 isoform X1
         108877833 rps6ka2; ribosomal protein S6 kinase alpha-2
         108899219 guanine nucleotide-binding protein subunit beta-2-like 1
         108874450 traf2b; TNF receptor-associated factor 2
         108878507 traf2a; TNF receptor-associated factor 2 isoform X1
         108895456 TNF receptor-associated factor 2
         108872558 nxf1a; nuclear RNA export factor 1 isoform X1
         108890566 histone deacetylase 6 isoform X1
         108887994 tudor domain-containing protein 3 isoform X1
         108881438 larp4ab; la-related protein 4 isoform X1
         108876475 LOW QUALITY PROTEIN: la-related protein 4
         108884787 la-related protein 4B isoform X1
K13201 TIA1; nucleolysin TIA-1/TIAR 
K13201 TIA1; nucleolysin TIA-1/TIAR 
K13201 TIA1; nucleolysin TIA-1/TIAR 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K17597 STAU; double-stranded RNA-binding protein Staufen 
K17597 STAU; double-stranded RNA-binding protein Staufen 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K13088 ELAVL1; ELAV-like protein 1 
K13088 ELAVL1; ELAV-like protein 1 
K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.3 3.6.4.13] 
K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
K15026 EIF2A; translation initiation factor 2A 
K03253 EIF3B; translation initiation factor 3 subunit B 
K03257 EIF4A; translation initiation factor 4A 
K03257 EIF4A; translation initiation factor 4A 
K13025 EIF4A3; ATP-dependent RNA helicase [EC:3.6.4.13] 
K03258 EIF4B; translation initiation factor 4B 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
K14284 NXF; nuclear RNA export factor 
K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
K18404 TDRD3; tudor domain-containing protein 3 
K18763 LARP4; la-related protein 4 
K18763 LARP4; la-related protein 4 
K18763 LARP4; la-related protein 4 
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: March 27, 2024