KEGG Orthology (KO) - Mycobacterium avium 104

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:mav03030]
     03410 Base excision repair [PATH:mav03410]
     03420 Nucleotide excision repair [PATH:mav03420]
     03430 Mismatch repair [PATH:mav03430]
     03440 Homologous recombination [PATH:mav03440]
     03450 Non-homologous end-joining [PATH:mav03450]
       MAV_1050 Ku protein
       MAV_1056 DNA ligase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:mav03000]
     03021 Transcription machinery [BR:mav03021]
     03019 Messenger RNA biogenesis [BR:mav03019]
     03041 Spliceosome
     03011 Ribosome [BR:mav03011]
     03009 Ribosome biogenesis [BR:mav03009]
     03016 Transfer RNA biogenesis [BR:mav03016]
     03012 Translation factors [BR:mav03012]
     03110 Chaperones and folding catalysts [BR:mav03110]
     04131 Membrane trafficking [BR:mav04131]
     04121 Ubiquitin system [BR:mav04121]
     03051 Proteasome [BR:mav03051]
     03032 DNA replication proteins [BR:mav03032]
     03036 Chromosome and associated proteins [BR:mav03036]
     03400 DNA repair and recombination proteins [BR:mav03400]
       MAV_1536 methylated-DNA--protein-cysteine methyltransferase
       MAV_4152 6-O-methylguanine DNA methyltransferase
       MAV_3897 Phr protein
       MAV_3828 ung; uracil-DNA glycosylase
       MAV_3083 3-methylpurine DNA glycosylase
       MAV_0563 putative A/G-specific adenine glycosylase
       MAV_0455 nth; endonuclease III
       MAV_3937 DNA ligase
       MAV_0990 DNA or RNA helicase of superfamily protein II
       MAV_1301 hydrolase
       MAV_4747 hydrolase
       MAV_3589 deoxyuridine 5'-triphosphate nucleotidohydrolase
       MAV_1407 uracil-DNA glycosylase superfamily protein
       MAV_4094 uracil DNA glycosylase superfamily protein
       MAV_1537 transcriptional regulator
       MAV_1355 DNA-3-methyladenine glycosylase I
       MAV_3149 formamidopyrimidine-DNA glycosylase H2TH domain family protein
       MAV_3782 mutM; formamidopyrimidine-DNA glycosylase
       MAV_1066 formamidopyrimidine-DNA glycosylase
       MAV_1708 endonuclease VIII and dna n-glycosylase with an ap lyase activity
       MAV_4727 xth; exodeoxyribonuclease III
       MAV_4501 endonuclease IV
       MAV_3868 ligA; DNA ligase, NAD-dependent
       MAV_3155 DNA polymerase I
       MAV_3135 uvrA; excinuclease ABC, A subunit
       MAV_3141 uvrB; excinuclease ABC, B subunit
       MAV_3360 uvrC; excinuclease ABC, C subunit
       MAV_1071 pcrA; ATP-dependent DNA helicase PcrA
       MAV_4143 ATP-dependent DNA helicase
       MAV_4147 superfamily protein I DNA and RNA helicases
       MAV_4503 rpoB; DNA-directed RNA polymerase, beta subunit
       MAV_4502 rpoC; DNA-directed RNA polymerase, beta' subunit
       MAV_4398 rpoA; DNA-directed RNA polymerase, alpha subunit
       MAV_3384 DNA-directed RNA polymerase omega chain
       MAV_1228 xseA; exodeoxyribonuclease VII, large subunit
       MAV_1227 xseB; exodeoxyribonuclease VII, small subunit
       MAV_3224 DNA polymerase III alpha subunit
       MAV_0002 dnaN; DNA polymerase III, beta subunit
       MAV_1769 DNA polymerase III
       MAV_0520 DNA polymerase III subunit delta
       MAV_2300 DNA polymerase III
       MAV_0391 DNA polymerase III subunit epsilon
       MAV_0382 DNA polymerase III gamma/tau subunit
       MAV_1694 ssb; single-strand binding protein
       MAV_4543 recB; exodeoxyribonuclease V, beta subunit
       MAV_4542 recC; exodeoxyribonuclease V, gamma subunit
       MAV_4544 recD; exodeoxyribonuclease V, alpha subunit
       MAV_3627 recA; protein RecA
       MAV_3474 ruvA; holliday junction DNA helicase RuvA
       MAV_3473 ruvB; holliday junction DNA helicase RuvB
       MAV_3475 ruvC; crossover junction endodeoxyribonuclease RuvC
       MAV_3375 priA; primosomal protein N'
       MAV_0568 radA; DNA repair protein RadA
       MAV_0003 DNA replication and repair protein RecF
       MAV_3818 recG; ATP-dependent DNA helicase RecG
       MAV_2033 recO; DNA repair protein RecO
       MAV_0388 recR; recombination protein RecR
       MAV_3075 recN; DNA repair protein RecN
       MAV_1050 Ku protein
       MAV_1056 DNA ligase
       MAV_0006 gyrA; DNA gyrase, A subunit
       MAV_0005 gyrB; DNA gyrase, B subunit
       MAV_0519 topA; DNA topoisomerase I
       MAV_3836 hup; DNA-binding protein HU
       MAV_0829 YqaK protein
       MAV_3232 DNA polymerase IV 1
       MAV_3925 DNA polymerase IV 2
       MAV_0172 DNA polymerase IV 2
       MAV_3614 lexA; LexA repressor
       MAV_4344 conserved hypothetical protein
       MAV_4335 DNA polymerase III
       MAV_3626 recX; regulatory protein RecX
       MAV_1548 DeaD/DeaH family protein helicase
       MAV_4267 DEAD/DEAH box helicase
       MAV_3835 hydrolase
       MAV_3071 MutT/nudix family protein
       MAV_3919 ribonucleoside-diphosphate reductase
       MAV_3913 ribonucleoside-diphosphate reductase
       MAV_4937 ribonucleotide-diphosphate reductase beta subunit
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:mav03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: February 22, 2020