BN44_11029 Conserved protein of unknown function
       BN44_11030 Putative ATP dependent DNA ligase (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (SEALase) (DNA repair enzyme) (DNA joinase)

K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]

       BN44_11479 ogt; Methylated-DNA--protein-cysteine methyltransferase
       BN44_60458 ung; Putative uracil-DNA glycosylase Ung (UDG)
       BN44_20253 mpg; Putative 3-methyladenine DNA glycosylase Mpg
       BN44_110085 mutY; Putative adenine glycosylase MutY
       BN44_120070 nth; Putative endonuclease III Nth (DNA-(apurinic or apyrimidinic site) lyase) (AP lyase) (AP endonuclease class I) (Endodeoxyribonuclease (Apurinic or Apyrimidinic)) (Deoxyribonuclease (Apurinic or Apyrimidinic))
       BN44_10943 ercc; Putative ATP-dependent DNA helicase ErcC3
       BN44_11298 mutT; Putative mutator protein MutT (7, 8-dihydro-8-oxoguanine-triphosphatase) (8-OXO-DGTPASE)
       BN44_10454 mutT; Putative mutator protein MutT3 (7, 8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTPase) (dGTP pyrophosphohydrolase)
       BN44_20149 Conserved protein of unknown function
       BN44_60149 dut; Putative deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (dUTPase) (dUTP pyrophosphatase) (deoxyuridine 5'-triphosphatase) (dUTP diphosphatase) (deoxyuridine-triphosphatase)
       BN44_11407 Conserved protein of unknown function
       BN44_11480 alkA; Putative ada regulatory protein alkA (Regulatory protein of adaptative response) (Methylated-DNA--protein-cysteine methyltransferase) (O-6-methylguanine-DNA alkyltransferase) (O-6-methylguanine-DNA methyltransferase) (3-methyladenine DNA glycosylase II)
       BN44_11351 tagA; Putative DNA-3-methyladenine glycosylase 1 (TAG I) (3-methyladenine-DNA glycosylase I, constitutive) (DNA-3-methyladenine glycosidase I)
       BN44_60400 fpg; Putative formamidopyrimidine-DNA glycosylase Fpg (FAPY-DNA glycosylase)
       BN44_11042 Putative formamidopyrimidine-DNA glycosylase
       BN44_70088 nei; Putative endonuclease VIII Nei
       BN44_50448 Putative DNA glycosylase
       BN44_10471 Exodeoxyribonuclease III protein XthA (Exonuclease III)
       BN44_10736 end; Putative endonuclease IV End (endodeoxyribonuclease IV) (apurinase)
       BN44_60502 ligA; Putative DNA ligase [NAD dependent] LigA (polydeoxyribonucleotide synthase [NAD+])
       BN44_20187 polA; Putative DNA polymerase I PolA
       BN44_20198 uvrA; Putative excinuclease ABC (subunit A-DNA-binding ATPase) UvrA
       BN44_20192 uvrB; Putative excinuclease ABC (subunit B-helicase) UvrB
       BN44_11597 uvrC; Putative excinuclease ABC (subunit C-nuclease) UvrC
       BN44_60713 uvrD; Putative ATP-dependent DNA helicase II UvrD2
       BN44_60717 Putative ATP-dependent DNA helicase
       BN44_11049 uvrD; Putative ATP-dependent DNA helicase II UvrD1
       BN44_10731 rpoB; DNA-directed RNA polymerase (beta chain) RpoB (transcriptase beta chain) (RNA polymerase beta subunit)
       BN44_10732 rpoC; DNA-directed RNA polymerase (beta' chain) RpoC (transcriptase beta' chain) (RNA polymerase beta' subunit)
       BN44_80133 rpoA; Putative DNA-directed RNA polymerase (alpha chain) RpoA (transcriptase alpha chain) (RNA polymerase alpha subunit) (DNA-directed RNA nucleotidyltransferase)
       BN44_11566 rpoZ; DNA-directed RNA polymerase (omega chain) RpoZ (transcriptase omega chain) (RNA polymerase omega subunit)
       BN44_11135 mfd; Putative transcription-repair coupling factor Mfd (TRCF)
       BN44_11233 xseA; Exodeoxyribonuclease VII large subunit XseA (Exonuclease VII large subunit)
       BN44_11232 xseB; Exodeoxyribonuclease VII small subunit XseB (Exonuclease VII small subunit)
       BN44_20111 dnaE; Putative DNA polymerase III (alpha chain) DnaE1 (DNA nucleotidyltransferase)
       BN44_10006 dnaN; DNA polymerase III (Beta chain) DnaN (DNA nucleotidyltransferase)
       BN44_50385 Conserved protein of unknown function
       BN44_120033 DNA polymerase
       BN44_120110 Putative DNA Polymerase III (epsilon subunit) DnaQ
       BN44_50128 Conserved protein of unknown function
       BN44_120120 dnaZX; DNA polymerase III (subunit gamma/tau) DnaZ/X
       BN44_10063 ssb; Putative single-strand binding protein Ssb (helix-destabilizing protein)
       BN44_50463 Single-stranded DNA-binding protein
       BN44_10690 recB; Exodeoxyribonuclease V beta chain
       BN44_10691 recC; Putative exonuclease V (gamma chain) RecC (exodeoxyribonuclease V gamma chain)(exodeoxyribonuclease V polypeptide)
       BN44_10689 recD; Putative exonuclease V (alpha chain) RecD (exodeoxyribonuclease V alpha chain) (exodeoxyribonuclease V polypeptide)
       BN44_60194 recA; Protein RecA
       BN44_60054 ruvA; Putative holliday junction DNA helicase RuvA
       BN44_60053 ruvB; Putative holliday junction DNA helicase RuvB
       BN44_60055 ruvC; Component of RuvABC resolvasome, endonuclease
       BN44_11578 priA; Putative primosomal protein N' PriA (Replication factor Y)
       BN44_110081 radA; DNA repair protein RadA (DNA repair protein SMS)
       BN44_10007 recF; DNA replication and repair protein RecF (single-strand DNA binding protein)
       BN44_60455 recG; ATP-dependent DNA helicase RecG
       BN44_50328 recO; Putative DNA repair protein RecO
       BN44_120114 recR; Recombination protein RecR
       BN44_20262 recN; Putative DNA repair protein RecN (recombination protein N)
       BN44_60284 Putative CRISPR-associated metal-dependent deoxyribonuclease Cas1
       BN44_50502 Conserved protein of unknown function
       BN44_11029 Conserved protein of unknown function
       BN44_11030 Putative ATP dependent DNA ligase (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (SEALase) (DNA repair enzyme) (DNA joinase)
       BN44_10010 gyrA; DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase)
       BN44_10009 gyrB; DNA gyrase (subunit B) GyrB (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase)
       BN44_120035 topA; DNA topoisomerase I TopA (Omega-Protein) (relaxing enzyme) (untwisting enzyme) (swivelase) (Type I DNA topoisomerase) (Nicking-closing enzyme) (TOPO I)
       BN44_60470 hupB; Putative DNA-binding protein Hu homolog HupB (histone-like protein) (HLP) (21-kDa laminin-2-binding protein)
       BN44_60567 dinP; Putative DNA-damage-inducible protein P DinP (DNA polymerase V) (Pol IV 2) (DNA nucleotidyltransferase (DNA-directed))
       BN44_20101 dinB; DNA polymerase IV DinX (POL IV 1) (DNA nucleotidyltransferase (DNA-directed))
       BN44_60177 lexA; LexA repressor
       BN44_80051 Conserved protein of unknown function
       BN44_80032 dnaE; Error-prone DNA polymerase
       BN44_60193 recX; Regulatory protein RecX
       BN44_11495 dinG; ATP-dependent helicase DinG
       BN44_70087 lhr; Putative ATP-dependent helicase Lhr (large helicase-related protein)
       BN44_60468 mutT; Putative hydrolase MutT1
       BN44_20266 Nudix hydrolase
       BN44_60562 nrdE; Ribonucleoside-diphosphate reductase 2, alpha subunit
       BN44_60559 nrdF; Ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
       BN44_10268 nrdB; Putative ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain)
       BN44_40262 nrdF; Ribonucleoside-diphosphate reductase (beta chain) NrdF1 (ribonucleotide reductase small subunit) (R2F protein)
       BN44_60304 Conserved protein of unknown function

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]