09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:mit03030]
03410 Base excision repair [PATH:mit03410]
03420 Nucleotide excision repair [PATH:mit03420]
03430 Mismatch repair [PATH:mit03430]
03440 Homologous recombination [PATH:mit03440]
03450 Non-homologous end-joining [PATH:mit03450]
OCO_09230 ku protein OCO_09250 ATP-dependent DNA ligase OCO_29900 putative DNA ligase-like protein
K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:mit03000]
03021 Transcription machinery [BR:mit03021]
03019 Messenger RNA biogenesis [BR:mit03019]
03041 Spliceosome
03011 Ribosome [BR:mit03011]
03009 Ribosome biogenesis [BR:mit03009]
03016 Transfer RNA biogenesis [BR:mit03016]
03012 Translation factors [BR:mit03012]
03110 Chaperones and folding catalysts [BR:mit03110]
04131 Membrane trafficking [BR:mit04131]
04121 Ubiquitin system [BR:mit04121]
03051 Proteasome [BR:mit03051]
03032 DNA replication proteins [BR:mit03032]
03036 Chromosome and associated proteins [BR:mit03036]
03400 DNA repair and recombination proteins [BR:mit03400]
OCO_15990 methylated-DNA--protein-cysteine methyltransferase OCO_37220 phr protein OCO_36470 uracil-DNA glycosylase OCO_29260 3-methyladenine DNA glycosylase OCO_04730 mutY OCO_04000 hypothetical protein OCO_08570 DNA or RNA helicase of superfamily protein II OCO_12120 hydrolase, NUDIX family protein OCO_46620 hypothetical protein OCO_30340 hypothetical protein OCO_34190 deoxyuridine 5'-triphosphate nucleotidohydrolase OCO_15100 uracil-DNA glycosylase superfamily protein OCO_39330 hypothetical protein OCO_16000 transcriptional regulator, AraC family protein OCO_12640 DNA-3-methyladenine glycosylase I OCO_29910 formamidopyrimidine DNA-glyxosylase OCO_09340 hypothetical protein OCO_36210 formamidopyrimidine-DNA glycosylase OCO_17730 hypothetical protein OCO_41340 hypothetical protein OCO_46290 exodeoxyribonuclease III OCO_43940 endonuclease IV OCO_36870 NAD-dependent DNA ligase LigA OCO_29980 DNA polymerase I OCO_29760 excinuclease ABC subunit A OCO_20570 ABC transporter related protein OCO_29830 excinuclease ABC subunit B OCO_32090 excinuclease ABC subunit C OCO_09380 ATP-dependent DNA helicase PcrA OCO_09390 ATP-dependent DNA helicase PcrA OCO_40030 hypothetical protein OCO_40070 hypothetical protein OCO_43960 DNA-directed RNA polymerase subunit beta OCO_43950 DNA-directed RNA polymerase subunit beta protein OCO_42870 DNA-directed RNA polymerase subunit alpha OCO_32320 DNA-directed RNA polymerase subunit omega OCO_10480 hypothetical protein OCO_11360 exodeoxyribonuclease VII large subunit OCO_11350 exodeoxyribonuclease VII small subunit OCO_30700 DNA polymerase III subunit alpha OCO_00020 DNA polymerase III subunit beta OCO_18260 hypothetical protein OCO_04300 DNA-directed DNA polymerase III subunit delta OCO_03440 DNA polymerase III subunit epsilon OCO_22490 hypothetical protein OCO_03340 DNA polymerase III subunit gamma/tau OCO_00700 single-stranded DNA-binding protein OCO_17590 hypothetical protein OCO_21430 DNA mismatch endonuclease Vsr OCO_44350 exodeoxyribonuclease V, beta subunit OCO_44340 exodeoxyribonuclease V, gamma subunit OCO_44360 hypothetical protein OCO_34540 recombinase A OCO_33120 holliday junction DNA helicase motor protein OCO_33110 holliday junction DNA helicase RuvB OCO_33130 holliday junction resolvase OCO_32250 primosome assembly protein PriA OCO_04770 DNA repair protein RadA OCO_00030 recombination protein F OCO_36360 ATP-dependent DNA helicase RecG OCO_20170 DNA repair protein RecO OCO_03400 recombination protein RecR OCO_29170 DNA repair protein RecN OCO_17340 ATP-binding protein OCO_09230 ku protein OCO_09250 ATP-dependent DNA ligase OCO_29900 putative DNA ligase-like protein OCO_00060 DNA gyrase, A subunit OCO_00050 DNA gyrase subunit B OCO_04280 DNA topoisomerase I OCO_39310 hypothetical protein OCO_36560 hypothetical protein OCO_01780 DNA polymerase IV OCO_30800 DNA polymerase IV OCO_34420 LexA repressor OCO_42110 hypothetical protein OCO_42010 error-prone DNA polymerase OCO_34530 recombination regulator RecX OCO_16130 deaD/DeaH family protein helicase OCO_41330 DEAD/DEAH box helicase OCO_36550 mutT1 OCO_29130 hypothetical protein OCO_15440 nudix hydrolase OCO_37460 ribonucleotide-diphosphate reductase subunit alpha OCO_37380 ribonucleotide-diphosphate reductase subunit beta OCO_48500 ribonucleotide-diphosphate reductase subunit beta OCO_45920 ribonucleotide-diphosphate reductase subunit beta OCO_35200 hypothetical protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
03029 Mitochondrial biogenesis [BR:mit03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite