KEGG Orthology (KO) - Mycobacterium intracellulare MOTT-02

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:mit03030]
     03410 Base excision repair [PATH:mit03410]
     03420 Nucleotide excision repair [PATH:mit03420]
     03430 Mismatch repair [PATH:mit03430]
     03440 Homologous recombination [PATH:mit03440]
     03450 Non-homologous end-joining [PATH:mit03450]
       OCO_09230 ku protein
       OCO_09250 ATP-dependent DNA ligase
       OCO_29900 putative DNA ligase-like protein
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:mit03000]
     03021 Transcription machinery [BR:mit03021]
     03019 Messenger RNA biogenesis [BR:mit03019]
     03041 Spliceosome
     03011 Ribosome [BR:mit03011]
     03009 Ribosome biogenesis [BR:mit03009]
     03016 Transfer RNA biogenesis [BR:mit03016]
     03012 Translation factors [BR:mit03012]
     03110 Chaperones and folding catalysts [BR:mit03110]
     04131 Membrane trafficking [BR:mit04131]
     04121 Ubiquitin system [BR:mit04121]
     03051 Proteasome [BR:mit03051]
     03032 DNA replication proteins [BR:mit03032]
     03036 Chromosome and associated proteins [BR:mit03036]
     03400 DNA repair and recombination proteins [BR:mit03400]
       OCO_15990 methylated-DNA--protein-cysteine methyltransferase
       OCO_37220 phr protein
       OCO_36470 uracil-DNA glycosylase
       OCO_29260 3-methyladenine DNA glycosylase
       OCO_04730 mutY
       OCO_04000 hypothetical protein
       OCO_08570 DNA or RNA helicase of superfamily protein II
       OCO_12120 hydrolase, NUDIX family protein
       OCO_46620 hypothetical protein
       OCO_30340 hypothetical protein
       OCO_34190 deoxyuridine 5'-triphosphate nucleotidohydrolase
       OCO_15100 uracil-DNA glycosylase superfamily protein
       OCO_39330 hypothetical protein
       OCO_16000 transcriptional regulator, AraC family protein
       OCO_12640 DNA-3-methyladenine glycosylase I
       OCO_29910 formamidopyrimidine DNA-glyxosylase
       OCO_09340 hypothetical protein
       OCO_36210 formamidopyrimidine-DNA glycosylase
       OCO_17730 hypothetical protein
       OCO_41340 hypothetical protein
       OCO_46290 exodeoxyribonuclease III
       OCO_43940 endonuclease IV
       OCO_36870 NAD-dependent DNA ligase LigA
       OCO_29980 DNA polymerase I
       OCO_29760 excinuclease ABC subunit A
       OCO_20570 ABC transporter related protein
       OCO_29830 excinuclease ABC subunit B
       OCO_32090 excinuclease ABC subunit C
       OCO_09380 ATP-dependent DNA helicase PcrA
       OCO_09390 ATP-dependent DNA helicase PcrA
       OCO_40030 hypothetical protein
       OCO_40070 hypothetical protein
       OCO_43960 DNA-directed RNA polymerase subunit beta
       OCO_43950 DNA-directed RNA polymerase subunit beta protein
       OCO_42870 DNA-directed RNA polymerase subunit alpha
       OCO_32320 DNA-directed RNA polymerase subunit omega
       OCO_10480 hypothetical protein
       OCO_11360 exodeoxyribonuclease VII large subunit
       OCO_11350 exodeoxyribonuclease VII small subunit
       OCO_30700 DNA polymerase III subunit alpha
       OCO_00020 DNA polymerase III subunit beta
       OCO_18260 hypothetical protein
       OCO_04300 DNA-directed DNA polymerase III subunit delta
       OCO_03440 DNA polymerase III subunit epsilon
       OCO_22490 hypothetical protein
       OCO_03340 DNA polymerase III subunit gamma/tau
       OCO_00700 single-stranded DNA-binding protein
       OCO_17590 hypothetical protein
       OCO_21430 DNA mismatch endonuclease Vsr
       OCO_44350 exodeoxyribonuclease V, beta subunit
       OCO_44340 exodeoxyribonuclease V, gamma subunit
       OCO_44360 hypothetical protein
       OCO_34540 recombinase A
       OCO_33120 holliday junction DNA helicase motor protein
       OCO_33110 holliday junction DNA helicase RuvB
       OCO_33130 holliday junction resolvase
       OCO_32250 primosome assembly protein PriA
       OCO_04770 DNA repair protein RadA
       OCO_00030 recombination protein F
       OCO_36360 ATP-dependent DNA helicase RecG
       OCO_20170 DNA repair protein RecO
       OCO_03400 recombination protein RecR
       OCO_29170 DNA repair protein RecN
       OCO_17340 ATP-binding protein
       OCO_09230 ku protein
       OCO_09250 ATP-dependent DNA ligase
       OCO_29900 putative DNA ligase-like protein
       OCO_00060 DNA gyrase, A subunit
       OCO_00050 DNA gyrase subunit B
       OCO_04280 DNA topoisomerase I
       OCO_39310 hypothetical protein
       OCO_36560 hypothetical protein
       OCO_01780 DNA polymerase IV
       OCO_30800 DNA polymerase IV
       OCO_34420 LexA repressor
       OCO_42110 hypothetical protein
       OCO_42010 error-prone DNA polymerase
       OCO_34530 recombination regulator RecX
       OCO_16130 deaD/DeaH family protein helicase
       OCO_41330 DEAD/DEAH box helicase
       OCO_36550 mutT1
       OCO_29130 hypothetical protein
       OCO_15440 nudix hydrolase
       OCO_37460 ribonucleotide-diphosphate reductase subunit alpha
       OCO_37380 ribonucleotide-diphosphate reductase subunit beta
       OCO_48500 ribonucleotide-diphosphate reductase subunit beta
       OCO_45920 ribonucleotide-diphosphate reductase subunit beta
       OCO_35200 hypothetical protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:mit03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 27, 2024