09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:mup03030]
03410 Base excision repair [PATH:mup03410]
03420 Nucleotide excision repair [PATH:mup03420]
03430 Mismatch repair [PATH:mup03430]
03440 Homologous recombination [PATH:mup03440]
03450 Non-homologous end-joining [PATH:mup03450]
A0256_02935 Ku protein A0256_05625 DNA ligase
K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:mup03000]
03021 Transcription machinery [BR:mup03021]
03019 Messenger RNA biogenesis [BR:mup03019]
03041 Spliceosome [BR:mup03041]
03011 Ribosome [BR:mup03011]
03009 Ribosome biogenesis [BR:mup03009]
03016 Transfer RNA biogenesis [BR:mup03016]
03012 Translation factors [BR:mup03012]
03110 Chaperones and folding catalysts [BR:mup03110]
04131 Membrane trafficking [BR:mup04131]
04121 Ubiquitin system [BR:mup04121]
03051 Proteasome [BR:mup03051]
03032 DNA replication proteins [BR:mup03032]
03036 Chromosome and associated proteins [BR:mup03036]
03400 DNA repair and recombination proteins [BR:mup03400]
A0256_24395 deoxyribodipyrimidine photolyase A0256_16240 uracil-DNA glycosylase A0256_18805 3-methyladenine DNA glycosylase A0256_04975 A/G-specific adenine glycosylase A0256_07755 endonuclease III A0256_13545 hypothetical protein A0256_07050 S1/P1 Nuclease A0256_20935 hypothetical protein A0256_06940 hypothetical protein A0256_12995 DNA mismatch repair protein MutT A0256_20620 hypothetical protein A0256_21155 NUDIX hydrolase A0256_15040 NUDIX hydrolase A0256_16140 DNA mismatch repair protein MutT A0256_10930 cysteine methyltransferase A0256_08795 deoxyribodipyrimidine photolyase A0256_05565 3-methyladenine DNA glycosylase A0256_07110 DNA-3-methyladenine glycosylase A0256_13200 hypothetical protein A0256_21335 DNA-formamidopyrimidine glycosylase A0256_21165 endonuclease A0256_07625 exodeoxyribonuclease III A0256_05965 exodeoxyribonuclease III A0256_02120 single-stranded-DNA-specific exonuclease RecJ A0256_10885 DNA ligase (NAD(+)) LigA A0256_07105 DNA polymerase I A0256_11700 excinuclease ABC subunit A A0256_08685 ABC-ATPase UvrA A0256_09120 excinuclease ABC subunit A A0256_03160 excinuclease ABC subunit B A0256_01715 excinuclease ABC subunit C A0256_12545 ATP-dependent DNA helicase A0256_04305 DNA helicase UvrD A0256_15455 hypothetical protein A0256_10070 rpoB; DNA-directed RNA polymerase subunit beta A0256_10075 DNA-directed RNA polymerase subunit beta' A0256_09420 DNA-directed RNA polymerase subunit alpha A0256_05205 transcription-repair coupling factor A0256_17960 DNA mismatch repair protein MutS A0256_17165 DNA mismatch repair protein MutS A0256_03000 DNA mismatch repair protein MutL A0256_10180 DNA polymerase III subunit alpha A0256_11440 DNA polymerase III subunit beta A0256_11170 DNA polymerase III subunit delta A0256_05690 hypothetical protein A0256_12025 DNA polymerase III subunit epsilon A0256_17940 DNA polymerase III subunit epsilon A0256_23520 DNA polymerase III subunit gamma/tau A0256_03390 hypothetical protein A0256_21305 hypothetical protein A0256_04980 single-stranded DNA-binding protein A0256_00985 hypothetical protein A0256_11340 single-stranded DNA-binding protein A0256_19600 hypothetical protein A0256_07760 DNA recombination/repair protein RecA A0256_03740 Holliday junction ATP-dependent DNA helicase RuvA A0256_17860 Holliday junction DNA helicase RuvB A0256_07200 crossover junction endodeoxyribonuclease RuvC A0256_16205 primosomal protein N' A0256_04945 DNA repair protein RadA A0256_08735 DNA recombination protein RecF A0256_07915 ATP-dependent DNA helicase RecG A0256_02770 DNA repair protein RecO A0256_18515 recombination protein RecR A0256_02385 DNA repair protein RecN A0256_02935 Ku protein A0256_05625 DNA ligase A0256_17045 DNA gyrase subunit A A0256_10160 gyrB; DNA topoisomerase IV subunit B A0256_15260 DNA topoisomerase I A0256_18840 DNA topoisomerase I A0256_04970 integration host factor subunit beta A0256_12165 recombinase RecQ A0256_15190 ATP-dependent DNA helicase RecQ A0256_06270 ATP-dependent DNA helicase RecQ A0256_05490 DNA polymerase IV A0256_17795 DNA polymerase IV A0256_20690 hypothetical protein A0256_20695 hypothetical protein A0256_20340 Error-prone repair protein ImuA A0256_20335 nucleotidyltransferase A0256_20330 error-prone DNA polymerase A0256_17275 RecX family transcriptional regulator A0256_11955 DNA polymerase IV A0256_04160 DNA ligase-associated DEXH box helicase A0256_10810 ribonucleoside-diphosphate reductase A0256_10805 ribonucleoside-diphosphate reductase A0256_08755 exopolyphosphatase
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K05986 NUCS; nuclease S1 [EC:3.1.30.1] K05986 NUCS; nuclease S1 [EC:3.1.30.1] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 K03572 mutL; DNA mismatch repair protein MutL K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K03502 umuC; DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K02347 polX; DNA polymerase (family X) K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
03029 Mitochondrial biogenesis [BR:mup03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Mucilaginibacter sp. PAMC 26640 KEGG Orthology (KO) - Mucilaginibacter sp. PAMC 26640