09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:ngv03030]
03410 Base excision repair [PATH:ngv03410]
03420 Nucleotide excision repair [PATH:ngv03420]
03430 Mismatch repair [PATH:ngv03430]
03440 Homologous recombination [PATH:ngv03440]
03450 Non-homologous end-joining [PATH:ngv03450]
CDO52_13055 Ku protein CDO52_22140 ATP-dependent DNA ligase CDO52_22145 ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:ngv03000]
03021 Transcription machinery [BR:ngv03021]
03019 Messenger RNA biogenesis [BR:ngv03019]
03041 Spliceosome
03011 Ribosome [BR:ngv03011]
03009 Ribosome biogenesis [BR:ngv03009]
03016 Transfer RNA biogenesis [BR:ngv03016]
03012 Translation factors [BR:ngv03012]
03110 Chaperones and folding catalysts [BR:ngv03110]
04131 Membrane trafficking [BR:ngv04131]
04121 Ubiquitin system [BR:ngv04121]
03051 Proteasome [BR:ngv03051]
03032 DNA replication proteins [BR:ngv03032]
03036 Chromosome and associated proteins [BR:ngv03036]
03400 DNA repair and recombination proteins [BR:ngv03400]
CDO52_24735 cysteine methyltransferase CDO52_02325 deoxyribodipyrimidine photo-lyase CDO52_13330 uracil-DNA glycosylase CDO52_25660 adenine glycosylase CDO52_03025 nth; endonuclease III CDO52_05100 helicase CDO52_18980 NUDIX domain-containing protein CDO52_07450 NUDIX domain-containing protein CDO52_24825 NUDIX hydrolase CDO52_02840 hypothetical protein CDO52_07530 NUDIX domain-containing protein CDO52_16775 NUDIX domain-containing protein CDO52_15060 NUDIX domain-containing protein CDO52_01505 NUDIX domain-containing protein CDO52_05075 NUDIX domain-containing protein CDO52_18250 dUTP diphosphatase CDO52_14280 alpha-ketoglutarate-dependent dioxygenase AlkB CDO52_18080 G/U mismatch-specific DNA glycosylase CDO52_24730 AraC family transcriptional regulator CDO52_07670 DNA-3-methyladenine glycosylase I CDO52_08810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase CDO52_09035 Fpg/Nei family DNA glycosylase CDO52_15010 xth; exodeoxyribonuclease III CDO52_05270 xth; exodeoxyribonuclease III CDO52_18400 endonuclease IV CDO52_13640 endonuclease V CDO52_22585 NAD-dependent DNA ligase LigA CDO52_18890 excinuclease ABC subunit A CDO52_12585 excinuclease ABC subunit UvrB CDO52_18865 excinuclease ABC subunit UvrC CDO52_24845 ATP-dependent DNA helicase PcrA CDO52_07840 ATP-dependent DNA helicase CDO52_07890 ATP-dependent DNA helicase UvrD2 CDO52_25260 rpoB; DNA-directed RNA polymerase subunit beta CDO52_25255 rpoC; DNA-directed RNA polymerase subunit beta' CDO52_25080 DNA-directed RNA polymerase subunit alpha CDO52_11820 DNA-directed RNA polymerase subunit omega CDO52_06485 mfd; transcription-repair coupling factor CDO52_06795 exodeoxyribonuclease VII small subunit CDO52_12285 DNA polymerase III subunit alpha CDO52_02095 DNA polymerase III subunit beta CDO52_02770 DNA polymerase III subunit beta CDO52_09930 holA; DNA polymerase III subunit delta CDO52_25890 DNA polymerase III subunit delta' CDO52_08410 DNA polymerase III subunit epsilon CDO52_11505 endonuclease CDO52_25840 DNA polymerase III subunit epsilon CDO52_01630 DNA polymerase III subunit gamma and tau CDO52_18965 single-stranded DNA-binding protein CDO52_01955 single-stranded DNA-binding protein CDO52_09265 single-stranded DNA-binding protein CDO52_07435 ATP-dependent RecD-like DNA helicase CDO52_20610 recA; DNA recombination/repair protein RecA CDO52_19270 Holliday junction branch migration protein RuvA CDO52_19265 Holliday junction branch migration DNA helicase RuvB CDO52_19275 crossover junction endodeoxyribonuclease RuvC CDO52_11890 primosome assembly protein PriA CDO52_11005 exonuclease CDO52_11010 exonuclease sbcCD subunit D CDO52_25650 DNA repair protein RadA CDO52_02105 DNA replication and repair protein RecF CDO52_03910 transcriptional regulator CDO52_08780 ATP-dependent DNA helicase RecG CDO52_20125 DNA repair protein RecO CDO52_01580 recombination protein RecR CDO52_18925 recN; DNA repair protein RecN CDO52_13055 Ku protein CDO52_22140 ATP-dependent DNA ligase CDO52_22145 ATP-dependent DNA ligase CDO52_10365 DNA topoisomerase IV subunit A CDO52_02120 DNA gyrase subunit A CDO52_10325 type IIA DNA topoisomerase subunit B CDO52_02115 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B CDO52_25905 topA; DNA topoisomerase I CDO52_00965 hypothetical protein CDO52_10425 recombinase RecQ CDO52_12010 DNA polymerase IV CDO52_10190 transcriptional repressor LexA CDO52_15265 DNA polymerase III subunit alpha CDO52_20605 recombination regulator RecX CDO52_10090 ATP-dependent DNA helicase CDO52_01775 ATP-dependent helicase CDO52_20630 DEAD/DEAH box helicase CDO52_05735 NUDIX hydrolase CDO52_12615 NUDIX domain-containing protein CDO52_17580 NUDIX hydrolase CDO52_01025 ribonucleoside-diphosphate reductase subunit alpha CDO52_10205 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent CDO52_01020 ribonucleotide-diphosphate reductase subunit beta CDO52_05090 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K07455 recT; recombination protein RecT K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:ngv03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Nocardiopsis gilva KEGG Orthology (KO) - Nocardiopsis gilva