DNA Repair and Recombination Proteins - Oryzias latipes (Japanese medaka)

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     KO
 Eukaryotic Type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         101155033 pcna; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         101157486 probable flap endonuclease 1 homolog
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         101158562 fen1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         110017319 flap endonuclease 1-like
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         101159868 flap endonuclease 1-like
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         101167483 lig1; DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         101167183 xpa; DNA repair protein complementing XP-A cells
         101168825 ercc1; DNA excision repair protein ERCC-1
         101167401 ercc4; DNA repair endonuclease XPF
         101173290 ercc5; DNA repair protein complementing XP-G cells
         101167483 lig1; DNA ligase 1
         101163725 mms19; MMS19 nucleotide excision repair protein homolog
         101172920 cullin-3
         101170875 cullin-3-like isoform X2
         101154889 cullin-5
         101165410 cullin-5
         101173584 eloc; elongin-C
         101171580 elongin-B-like isoform X4
         101169818 elob; elongin-B
         101175342 elongin-A
         101158541 eloa; elongin-A isoform X1
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         101155033 pcna; proliferating cell nuclear antigen
         101157803 exo1; exonuclease 1 isoform X2
         101156596 high mobility group protein B1
         101165167 high mobility group-T protein
         101167483 lig1; DNA ligase 1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic Type

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Last updated: June 5, 2019