DNA Repair and Recombination Proteins - Oryza sativa japonica (Japanese rice) (RefSeq)

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         4331062 proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         4339464 flap endonuclease 1-A
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         4334691 flap endonuclease 1-B
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         4348965 DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
         4324149 DNA ligase 3
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         4349131 DNA excision repair protein ERCC-1
         4331279 DNA repair endonuclease UVH1
         4331991 DNA repair protein UVH3 isoform X1
         4348965 DNA ligase 1
         4324149 DNA ligase 3
         4342544 MMS19 nucleotide excision repair protein homolog isoform X1
         4330720 cullin-3A
         4337175 cullin-3B
         4344771 cullin-3A
         4351227 transcription elongation factor B polypeptide 1
         4344764 uncharacterized protein LOC4344764
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K03872 ELOC; elongin-C 
K15077 ELA1; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         4331062 proliferating cell nuclear antigen
         4327899 exonuclease 1 isoform X1
         4342129 DNA-binding protein MNB1B
         4348965 DNA ligase 1
         4324149 DNA ligase 3
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: July 6, 2020