KEGG Orthology (KO) - Pseudomonas aeruginosa PAO581

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:paeo03030]
     03410 Base excision repair [PATH:paeo03410]
     03420 Nucleotide excision repair [PATH:paeo03420]
     03430 Mismatch repair [PATH:paeo03430]
     03440 Homologous recombination [PATH:paeo03440]
     03450 Non-homologous end-joining [PATH:paeo03450]
       M801_2219 Ku protein
       M801_2204 ligD; DNA ligase D
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:paeo03000]
     03021 Transcription machinery [BR:paeo03021]
     03019 Messenger RNA biogenesis [BR:paeo03019]
     03041 Spliceosome
     03011 Ribosome [BR:paeo03011]
     03009 Ribosome biogenesis [BR:paeo03009]
     03016 Transfer RNA biogenesis [BR:paeo03016]
     03012 Translation factors [BR:paeo03012]
     03110 Chaperones and folding catalysts [BR:paeo03110]
     04131 Membrane trafficking [BR:paeo04131]
     04121 Ubiquitin system [BR:paeo04121]
     03051 Proteasome [BR:paeo03051]
     03032 DNA replication proteins [BR:paeo03032]
     03036 Chromosome and associated proteins [BR:paeo03036]
     03400 DNA repair and recombination proteins [BR:paeo03400]
       M801_1028 methylated-DNA-[]-cysteine S-methyltransferase family protein
       M801_4680 FAD binding domain of DNA photolyase family protein
       M801_774 ung; uracil-DNA glycosylase
       M801_4005 methylpurine-DNA glycosylase family protein
       M801_5187 mutY; A/G-specific adenine glycosylase
       M801_3483 nth; endonuclease III
       M801_3156 NUDIX domain protein
       M801_2730 nudt1; nudix hydrolase 1
       M801_4410 mutator mutT family protein
       M801_5366 dut; dUTP diphosphatase family protein
       M801_2182 methylated-DNA-[]-cysteine S-methyltransferase family protein
       M801_3584 methylated-DNA-[]-cysteine S-methyltransferase family protein
       M801_1732 hypothetical protein
       M801_10 tag; DNA-3-methyladenine glycosylase I family protein
       M801_366 mutM; formamidopyrimidine-DNA glycosylase
       M801_5377 exodeoxyribonuclease III family protein
       M801_2482 xth; exodeoxyribonuclease III
       M801_4170 xth; exodeoxyribonuclease III
       M801_3713 recJ; single-stranded-DNA-specific exonuclease RecJ
       M801_1570 ligA; DNA ligase, NAD-dependent
       M801_5545 polA; DNA polymerase I
       M801_4232 uvrA; excinuclease ABC subunit A
       M801_3116 uvrB; excinuclease ABC subunit B
       M801_2530 uvrC; excinuclease ABC subunit C
       M801_5496 uvrD; DNA helicase II
       M801_1996 hypothetical protein
       M801_4268 rpoB; DNA-directed RNA polymerase, beta subunit
       M801_4267 rpoC; DNA-directed RNA polymerase, beta' subunit
       M801_4236 rpoA; DNA-directed RNA polymerase, alpha subunit
       M801_5382 rpoZ; DNA-directed RNA polymerase, omega subunit
       M801_2973 mfd; transcription-repair coupling factor
       M801_3609 mutS; DNA mismatch repair protein MutS
       M801_4983 mutL; DNA mismatch repair MutL family protein
       M801_4324 hypothetical protein
       M801_3767 xseA; exodeoxyribonuclease VII, large subunit
       M801_4037 xseB; exodeoxyribonuclease VII, small subunit
       M801_3629 dnaE; DNA polymerase III, alpha subunit
       M801_2 dnaN; DNA polymerase III, beta subunit
       M801_3824 DNA polymerase III chi subunit
       M801_3985 holA; DNA polymerase III, delta subunit
       M801_2931 holB; DNA polymerase III, delta' subunit
       M801_3209 exonuclease family protein
       M801_1870 dnaQ; DNA polymerase III, epsilon subunit
       M801_1573 dnaX; DNA polymerase III, subunit gamma and tau
       M801_4230 ssb; single-stranded DNA-binding protein
       M801_4291 recB; exodeoxyribonuclease V, beta subunit
       M801_4292 recC; exodeoxyribonuclease V, gamma subunit
       M801_4290 recD; exodeoxyribonuclease V, alpha subunit
       M801_3606 recA; protein RecA
       M801_1000 ruvA; Holliday junction DNA helicase RuvA
       M801_1001 ruvB; Holliday junction DNA helicase RuvB
       M801_999 ruvC; crossover junction endodeoxyribonuclease RuvC
       M801_5088 priA; primosomal protein N'
       M801_4289 AAA domain protein
       M801_4288 sbcD; exonuclease SbcCD, D subunit
       M801_4626 radA; DNA repair protein RadA
       M801_3 recF; DNA replication and repair RecF family protein
       M801_5390 recG; ATP-dependent DNA helicase RecG
       M801_798 recO; DNA repair protein RecO
       M801_1575 recR; recombination protein RecR
       M801_4793 recN; DNA repair protein RecN
       M801_3244 rdgC; recombination-associated protein rdgC
       M801_2219 Ku protein
       M801_2204 ligD; DNA ligase D
       M801_3144 gyrA; DNA gyrase, A subunit
       M801_4 gyrB; DNA gyrase, B subunit
       M801_2982 topA; DNA topoisomerase I
       M801_2315 eukaryotic DNA topoisomerase I
       M801_5393 hupB; DNA-binding protein HU-beta
       M801_3935 hupA; DNA-binding protein HU 1
       M801_1857 hupB; DNA-binding protein HU-beta
       M801_4888 bacterial regulatory
       M801_2687 ihfA; integration host factor, alpha subunit
       M801_3137 ihfB; integration host factor, beta subunit
       M801_3328 recQ; ATP-dependent DNA helicase RecQ
       M801_955 hypothetical protein
       M801_2978 lexA; repressor LexA
       M801_1944 DNA polymerase family B
       M801_689 hypothetical protein
       M801_688 dnaE; DNA polymerase III, alpha subunit
       M801_3605 recX family protein
       M801_5341 rep; ATP-dependent DNA helicase Rep
       M801_1081 DEAD/DEAH box helicase family protein
       M801_3253 DEAD/H associated family protein
       M801_1194 ribonucleoside-diphosphate reductase
       M801_5549 ribonucleoside-diphosphate reductase
       M801_1193 ribonucleotide reductase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:paeo03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: January 19, 2020