09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:paer03030]
03410 Base excision repair [PATH:paer03410]
03420 Nucleotide excision repair [PATH:paer03420]
03430 Mismatch repair [PATH:paer03430]
03440 Homologous recombination [PATH:paer03440]
03450 Non-homologous end-joining [PATH:paer03450]
PA1R_gp5628 Ku domain protein PA1R_gp5617 ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:paer03000]
03021 Transcription machinery [BR:paer03021]
03019 Messenger RNA biogenesis [BR:paer03019]
03041 Spliceosome
03011 Ribosome [BR:paer03011]
03009 Ribosome biogenesis [BR:paer03009]
03016 Transfer RNA biogenesis [BR:paer03016]
03012 Translation factors [BR:paer03012]
03110 Chaperones and folding catalysts [BR:paer03110]
04131 Membrane trafficking [BR:paer04131]
04121 Ubiquitin system [BR:paer04121]
03051 Proteasome [BR:paer03051]
03032 DNA replication proteins [BR:paer03032]
03036 Chromosome and associated proteins [BR:paer03036]
03400 DNA repair and recombination proteins [BR:paer03400]
PA1R_gp4592 Methylated-DNA--protein-cysteine methyltransferase PA1R_gp2568 Deoxyribodipyrimidine photolyase PA1R_gp4242 Uracil-DNA glycosylase, family 1 PA1R_gp1899 DNA-3-methyladenine glycosylase II PA1R_gp3076 A/G-specific adenine glycosylase PA1R_gp1333 Endonuclease III PA1R_gp5492 DinG family ATP-dependent helicase PA1R_gp0589 ADP-ribose pyrophosphatase PA1R_gp1011 NTP pyrophosphohydrolase including oxidative damage repair enzyme PA1R_gp2300 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) PA1R_gp1311 Nudix hydrolase family protein PA1R_gp2838 Nudix-related transcriptional regulator NrtR PA1R_gp3252 Deoxyuridine 5'-triphosphate nucleotidohydrolase PA1R_gp1415 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase PA1R_gp5266 DNA-3-methyladenine glycosylase II PA1R_gp3521 DNA-3-methyladenine glycosylase PA1R_gp3868 Formamidopyrimidine-DNA glycosylase PA1R_gp0340 Exodeoxyribonuclease III PA1R_gp2063 Exodeoxyribonuclease III PA1R_gp3263 Exodeoxyribonuclease III PA1R_gp1581 Single-stranded-DNA-specific exonuclease RecJ PA1R_gp5111 DNA ligase PA1R_gp3427 DNA polymerase I PA1R_gp2125 Excinuclease ABC subunit A PA1R_gp0981 Excinuclease ABC subunit B PA1R_gp0384 Excinuclease ABC subunit C PA1R_gp3378 ATP-dependent DNA helicase UvrD/PcrA PA1R_gp4508 ATP-dependent DNA helicase UvrD/PcrA PA1R_gp2158 DNA-directed RNA polymerase beta subunit PA1R_gp2157 DNA-directed RNA polymerase beta' subunit PA1R_gp2129 DNA-directed RNA polymerase alpha subunit PA1R_gp3268 DNA-directed RNA polymerase omega subunit PA1R_gp0835 Transcription-repair coupling factor PA1R_gp1438 DNA mismatch repair protein MutS PA1R_gp2869 DNA mismatch repair protein MutL PA1R_gp2215 Exodeoxyribonuclease I PA1R_gp1641 Exodeoxyribonuclease VII large subunit PA1R_gp1930 Exodeoxyribonuclease VII small subunit PA1R_gp1457 DNA polymerase III alpha subunit PA1R_gp3513 DNA polymerase III beta subunit PA1R_gp1726 DNA polymerase III chi subunit PA1R_gp1880 DNA polymerase III delta subunit PA1R_gp0794 DNA polymerase III delta prime subunit PA1R_gp1062 DNA polymerase III epsilon subunit PA1R_gp5441 DNA polymerase III epsilon subunit PA1R_gp5114 DNA polymerase III subunits gamma and tau PA1R_gp2123 Single-stranded DNA-binding protein PA1R_gp4571 Single-stranded DNA-binding protein PA1R_gp2181 Exodeoxyribonuclease V beta chain PA1R_gp2182 Exodeoxyribonuclease V gamma chain PA1R_gp2180 Exodeoxyribonuclease V alpha chain PA1R_gp1435 RecA protein PA1R_gp4493 Holliday junction DNA helicase RuvA PA1R_gp4494 Holliday junction DNA helicase RuvB PA1R_gp4492 Crossover junction endodeoxyribonuclease RuvC PA1R_gp2976 Helicase PriA essential for oriC/DnaA-independent DNA replication PA1R_gp0539 Superfamily I DNA and RNA helicase and helicase subunits PA1R_gp2179 Exonuclease SbcC PA1R_gp2178 Exonuclease SbcD PA1R_gp2515 DNA repair protein RadA PA1R_gp3514 DNA recombination and repair protein RecF PA1R_gp3276 ATP-dependent DNA helicase RecG PA1R_gp4265 DNA recombination and repair protein RecO PA1R_gp5116 Recombination protein RecR PA1R_gp2679 DNA repair protein RecN PA1R_gp1098 DNA recombination-dependent growth factor C PA1R_gp2205 ATPase PA1R_gp5628 Ku domain protein PA1R_gp5617 ATP-dependent DNA ligase PA1R_gp0999 DNA gyrase subunit A PA1R_gp3515 DNA gyrase subunit B PA1R_gp0045 DNA topoisomerase IB (poxvirus type) PA1R_gp0844 DNA topoisomerase I PA1R_gp4570 DNA topoisomerase III PA1R_gp3279 DNA-binding protein HU-alpha PA1R_gp1830 DNA-binding protein HU-beta PA1R_gp5428 DNA-binding protein HU-beta PA1R_gp2774 DNA-binding protein Fis PA1R_gp0552 Integration host factor alpha subunit PA1R_gp0992 Integration host factor beta subunit PA1R_gp1182 ATP-dependent DNA helicase RecQ PA1R_gp4449 DNA polymerase IV PA1R_gp4545 Error-prone, lesion bypass DNA polymerase V (UmuC) PA1R_gp0840 SOS-response repressor and protease LexA PA1R_gp5513 DNA polymerase II PA1R_gp4176 RecA/RadA recombinase PA1R_gp4175 DNA polymerase-like protein PA1R_gp4174 DNA polymerase III alpha subunit PA1R_gp1434 Regulatory protein RecX PA1R_gp3229 ATP-dependent DNA helicase Rep PA1R_gp4644 ATP-dependent helicase DinG/Rad3 PA1R_gp1107 Lhr-like helicase PA1R_gp4767 Ribonucleotide reductase of class Ia (aerobic), alpha subunit PA1R_gp3431 Ribonucleotide reductase of class II (coenzyme B12-dependent) PA1R_gp4766 Ribonucleotide reductase of class Ia (aerobic), beta subunit
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04067 priC; primosomal replication protein N'' K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K05787 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K03502 umuC; DNA polymerase V K01356 lexA; repressor LexA [EC:3.4.21.88] K02336 polB; DNA polymerase II [EC:2.7.7.7] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:paer03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite