KEGG Orthology (KO) - Paracoccus jeotgali

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:paru03030]
     03410 Base excision repair [PATH:paru03410]
       CYR75_12075 DNA-formamidopyrimidine glycosylase
       CYR75_03055 nth; endonuclease III
       CYR75_11605 3-methyladenine DNA glycosylase
       CYR75_01570 DNA-3-methyladenine glycosylase I
       CYR75_01495 uracil-DNA glycosylase
       CYR75_07775 uracil-DNA glycosylase
       CYR75_07140 uracil-DNA glycosylase
       CYR75_14730 mutY; A/G-specific adenine glycosylase
       CYR75_12855 DNA-3-methyladenine glycosylase
       CYR75_07615 xth; exodeoxyribonuclease III
       CYR75_12300 exodeoxyribonuclease III
       CYR75_05905 DNA polymerase I
       CYR75_02535 recJ; single-stranded-DNA-specific exonuclease RecJ
       CYR75_08645 DNA ligase (NAD(+)) LigA
       CYR75_07985 ATP-dependent DNA ligase
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
     03420 Nucleotide excision repair [PATH:paru03420]
     03430 Mismatch repair [PATH:paru03430]
     03440 Homologous recombination [PATH:paru03440]
     03450 Non-homologous end-joining [PATH:paru03450]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:paru03000]
     03021 Transcription machinery [BR:paru03021]
     03019 Messenger RNA biogenesis [BR:paru03019]
     03041 Spliceosome
     03011 Ribosome [BR:paru03011]
     03009 Ribosome biogenesis [BR:paru03009]
     03016 Transfer RNA biogenesis [BR:paru03016]
     03012 Translation factors [BR:paru03012]
     03110 Chaperones and folding catalysts [BR:paru03110]
     04131 Membrane trafficking [BR:paru04131]
     04121 Ubiquitin system
     03051 Proteasome
     03032 DNA replication proteins [BR:paru03032]
     03036 Chromosome and associated proteins [BR:paru03036]
     03400 DNA repair and recombination proteins [BR:paru03400]
       CYR75_07140 uracil-DNA glycosylase
       CYR75_12855 DNA-3-methyladenine glycosylase
       CYR75_14730 mutY; A/G-specific adenine glycosylase
       CYR75_03055 nth; endonuclease III
       CYR75_07985 ATP-dependent DNA ligase
       CYR75_01280 8-oxo-dGTP diphosphatase MutT
       CYR75_02715 dUTP diphosphatase
       CYR75_00655 bifunctional transcriptional activator/DNA repair enzyme protein Ada
       CYR75_01495 uracil-DNA glycosylase
       CYR75_07775 uracil-DNA glycosylase
       CYR75_11605 3-methyladenine DNA glycosylase
       CYR75_01570 DNA-3-methyladenine glycosylase I
       CYR75_12075 DNA-formamidopyrimidine glycosylase
       CYR75_07615 xth; exodeoxyribonuclease III
       CYR75_12300 exodeoxyribonuclease III
       CYR75_02535 recJ; single-stranded-DNA-specific exonuclease RecJ
       CYR75_08645 DNA ligase (NAD(+)) LigA
       CYR75_05905 DNA polymerase I
       CYR75_08515 excinuclease ABC subunit A
       CYR75_07840 excinuclease ABC subunit UvrB
       CYR75_09835 excinuclease ABC subunit C
       CYR75_01965 DNA helicase II
       CYR75_02125 rpoB; DNA-directed RNA polymerase subunit beta
       CYR75_02130 rpoC; DNA-directed RNA polymerase subunit beta'
       CYR75_08060 DNA-directed RNA polymerase subunit alpha
       CYR75_08820 DNA-directed RNA polymerase subunit omega
       CYR75_03495 mfd; transcription-repair coupling factor
       CYR75_04755 DNA mismatch repair protein MutS
       CYR75_12120 DNA mismatch repair endonuclease MutL
       CYR75_06940 exodeoxyribonuclease VII large subunit
       CYR75_12110 exodeoxyribonuclease VII small subunit
       CYR75_00045 DNA polymerase III subunit alpha
       CYR75_12055 DNA polymerase III subunit beta
       CYR75_10560 DNA polymerase III subunit chi
       CYR75_10990 DNA polymerase III subunit delta
       CYR75_09360 DNA polymerase III subunit delta'
       CYR75_05875 3'-5' exonuclease
       CYR75_13000 DNA polymerase III subunit epsilon
       CYR75_06880 DNA polymerase III subunit gamma/tau
       CYR75_03470 single-stranded DNA-binding protein
       CYR75_04630 very short patch repair endonuclease
       CYR75_00460 very short patch repair endonuclease
       CYR75_02610 recA; recombinase RecA
       CYR75_14830 Holliday junction branch migration protein RuvA
       CYR75_14840 Holliday junction branch migration DNA helicase RuvB
       CYR75_14825 crossover junction endodeoxyribonuclease RuvC
       CYR75_08470 primosomal protein N'
       CYR75_12050 DNA replication/repair protein RecF
       CYR75_08640 ATP-dependent DNA helicase RecG
       CYR75_08375 DNA repair protein RecO
       CYR75_06890 recombination protein RecR
       CYR75_09065 recN; DNA repair protein RecN
       CYR75_13055 addA; double-strand break repair helicase AddA
       CYR75_04110 helicase
       CYR75_01425 Ku protein
       CYR75_01435 Ku protein
       CYR75_01430 ligD; DNA ligase D
       CYR75_03860 DNA gyrase subunit A
       CYR75_12045 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B
       CYR75_01670 topA; type I DNA topoisomerase
       CYR75_12275 DNA topoisomerase I
       CYR75_15330 DNA-binding protein
       CYR75_12020 DNA-binding protein
       CYR75_07700 ihfA; integration host factor subunit alpha
       CYR75_02380 ihfB; integration host factor subunit beta
       CYR75_14855 recQ; DNA helicase RecQ
       CYR75_13610 transcriptional regulator
       CYR75_03265 DNA polymerase IV
       CYR75_07160 repressor LexA
       CYR75_10100 hypothetical protein
       CYR75_10115 error-prone DNA polymerase
       CYR75_07980 DNA ligase-associated DEXH box helicase
       CYR75_13790 ribonucleotide-diphosphate reductase subunit alpha
       CYR75_13785 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12]
K19789 radD; DNA repair protein RadD
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:paru03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: January 25, 2020