KEGG Orthology (KO) - Pseudomonas chlororaphis subsp. aurantiaca

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:pcp03030]
     03410 Base excision repair [PATH:pcp03410]
     03420 Nucleotide excision repair [PATH:pcp03420]
     03430 Mismatch repair [PATH:pcp03430]
     03440 Homologous recombination [PATH:pcp03440]
     03450 Non-homologous end-joining [PATH:pcp03450]
       JM49_15950 DNA repair protein
       JM49_15955 ligD; ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:pcp03000]
     03021 Transcription machinery [BR:pcp03021]
     03019 Messenger RNA biogenesis [BR:pcp03019]
     03041 Spliceosome
     03011 Ribosome [BR:pcp03011]
     03009 Ribosome biogenesis [BR:pcp03009]
     03016 Transfer RNA biogenesis [BR:pcp03016]
     03012 Translation factors [BR:pcp03012]
     03110 Chaperones and folding catalysts [BR:pcp03110]
     04131 Membrane trafficking [BR:pcp04131]
     04121 Ubiquitin system [BR:pcp04121]
     03051 Proteasome [BR:pcp03051]
     03032 DNA replication proteins [BR:pcp03032]
     03036 Chromosome and associated proteins [BR:pcp03036]
     03400 DNA repair and recombination proteins [BR:pcp03400]
       JM49_05800 cysteine methyltransferase
       JM49_05610 deoxyribodipyrimidine photolyase
       JM49_23180 uracil-DNA glycosylase
       JM49_04055 3-methyladenine DNA glycosylase
       JM49_28550 adenine glycosylase
       JM49_06965 endonuclease III
       JM49_20055 NUDIX hydrolase
       JM49_07350 hypothetical protein
       JM49_01040 deoxyuridine 5'-triphosphate nucleotidohydrolase
       JM49_28430 6-O-methylguanine DNA methyltransferase
       JM49_13780 6-O-methylguanine DNA methyltransferase
       JM49_13785 alpha-ketoglutarate-dependent dioxygenase
       JM49_17675 DNA-3-methyladenine glycosylase
       JM49_07755 DNA-3-methyladenine glycosylase
       JM49_30475 3-methyladenine DNA glycosylase
       JM49_01980 5-hydroxymethyluracil DNA glycosylase
       JM49_14990 exodeoxyribonuclease III
       JM49_01020 exodeoxyribonuclease III
       JM49_11510 exonuclease III
       JM49_24735 ssDNA exonuclease RecJ
       JM49_20735 NAD-dependent DNA ligase LigA
       JM49_02435 NAD-dependent DNA ligase LigB
       JM49_30145 DNA polymerase I
       JM49_03580 excinuclease ABC subunit A
       JM49_12170 excinuclease ABC subunit A
       JM49_20260 excinuclease ABC subunit B
       JM49_12590 uvrC; excinuclease ABC subunit C
       JM49_00540 uvrD; DNA-dependent helicase II
       JM49_03405 rpoB; DNA-directed RNA polymerase subunit beta
       JM49_03410 DNA-directed RNA polymerase subunit beta'
       JM49_03560 DNA-directed RNA polymerase subunit alpha
       JM49_00995 DNA-directed RNA polymerase subunit omega
       JM49_20435 transcription-repair coupling factor
       JM49_24260 DNA mismatch repair protein MutS
       JM49_27560 mutL; DNA mismatch repair protein
       JM49_07285 sbcB; exonuclease I
       JM49_06545 exodeoxyribonuclease
       JM49_03820 exodeoxyribonuclease VII small subunit
       JM49_24350 DNA polymerase III subunit alpha
       JM49_30535 DNA polymerase III subunit beta
       JM49_24970 DNA polymerase III subunit chi
       JM49_04135 DNA polymerase III subunit delta
       JM49_21265 DNA polymerase III subunit delta'
       JM49_04280 DNA polymerase III subunit epsilon
       JM49_02855 DNA polymerase III subunit epsilon
       JM49_16935 DNA polymerase III subunit epsilon
       JM49_20690 DNA polymerase III subunit gamma/tau
       JM49_03590 single-stranded DNA-binding protein
       JM49_26650 exodeoxyribonuclease V subunit beta
       JM49_26655 exodeoxyribonuclease V subunit gamma
       JM49_26645 exodeoxyribonuclease V subunit alpha
       JM49_24035 recombinase RecA
       JM49_07425 ATP-dependent DNA helicase RuvA
       JM49_07430 ruvB; ATP-dependent DNA helicase RuvB
       JM49_07420 crossover junction endodeoxyribonuclease RuvC
       JM49_28140 primosomal protein N'
       JM49_16805 chromosome segregation protein SMC
       JM49_16800 exonuclease SbcD
       JM49_04520 DNA repair protein RadA
       JM49_30530 recombinase RecF
       JM49_00950 ATP-dependent DNA helicase RecG
       JM49_24930 DNA recombination protein RecO
       JM49_20675 recR; recombination protein RecR
       JM49_26195 recombination and repair protein
       JM49_08835 recombinase RdgC
       JM49_06320 CRISPR-associated protein Cas1
       JM49_15950 DNA repair protein
       JM49_15955 ligD; ATP-dependent DNA ligase
       JM49_09300 DNA gyrase subunit A
       JM49_30525 gyrB; DNA gyrase subunit B
       JM49_13695 DNA topoisomerase
       JM49_20485 DNA topoisomerase I
       JM49_00815 integration host factor
       JM49_24995 dipicolinate synthase
       JM49_27075 Fis family transcriptional regulator
       JM49_19900 ihfA; integration host factor subunit alpha
       JM49_09340 integration host factor subunit beta
       JM49_28980 ATP-dependent DNA helicase RecQ
       JM49_22475 ATP-dependent DNA helicase RecQ
       JM49_23935 DNA polymerase IV
       JM49_09840 RulA protein
       JM49_20465 LexA family transcriptional regulator
       JM49_12145 LexA family transcriptional regulator
       JM49_18630 DNA polymerase II
       JM49_12155 DNA repair nucleotidyltransferase
       JM49_12160 dnaE2; DNA polymerase
       JM49_24030 recombinase RecX
       JM49_01150 ATP-dependent DNA helicase Rep
       JM49_23800 ATP-dependent DNA helicase DinG
       JM49_03685 ATP-dependent DNA helicase
       JM49_08490 ribonucleotide-diphosphate reductase subunit alpha
       JM49_08230 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:pcp03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: June 25, 2019