KEGG Orthology (KO) - Pseudomonas fluorescens SBW25

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:pfs03000]
     03021 Transcription machinery [BR:pfs03021]
     03019 Messenger RNA biogenesis [BR:pfs03019]
     03041 Spliceosome
     03011 Ribosome [BR:pfs03011]
     03009 Ribosome biogenesis [BR:pfs03009]
       PFLU_1060 rnc; ribonuclease III
       PFLU_0656 conserved hypothetical protein
       PFLU_0512 orn; oligoribonuclease
       PFLU_1061 era; GTP-binding protein
       PFLU_5169 putative putative GTP-binding protein
       PFLU_6086 putative RNA polymerase-binding protein
       PFLU_2586 putative DnaK suppressor protein
       PFLU_5233 dosage-dependent DnaK suppressor protein
       PFLU_5254 transcription termination factor
       PFLU_5469 putative N utilisation-related protein
       PFLU_5539 nusG; transcription antitermination protein
       PFLU_1436 rsuA; ribosomal small subunit pseudouridine synthase A
       PFLU_5578 ksgA; dimethyladenosine transferase
       PFLU_0016 rsmB; ribosomal RNA small subunit methyltransferase B
       PFLU_0919 putative ribosomal RNA small subunit methyltransferase C
       PFLU_5784 conserved hypothetical protein
       PFLU_5728 conserved hypothetical protein
       PFLU_6128 gidB; glucose inhibited division protein B methyltransferase
       PFLU_0939 mraW; S-adenosyl-methyltransferase
       PFLU_0937 conserved hypothetical protein
       PFLU_1248 conserved hypothetical protein
       PFLU_1258 rrmA; ribosomal RNA large subunit methyltransferase A
       PFLU_0531 rlmB; 23s rRNA (guanosine-2'-o-)-methyltransferase
       PFLU_5261 cell division protein
       PFLU_1051 conserved hypothetical protein
       PFLU_5343 putative methyltransferase
       PFLU_5424 conserved hypothetical protein
       PFLU_2781 conserved hypothetical protein
       PFLU_5246 conserved hypothetical protein
       PFLU_5795 conserved hypothetical protein
       PFLU_0456 conserved hypothetical protein
       PFLU_4601 conserved hypothetical protein
       PFLU_1543 conserved hypothetical protein
       PFLU_5060 conserved hypothetical protein
       PFLU_4506 23s rRNA (uracil-5-)-methyltransferase
       PFLU_4372 ribosomal large subunit pseudouridine synthase A
       PFLU_1751 putative ribosomal subunit pseudouridine synthase
       PFLU_4874 ribosomal large subunit pseudouridine synthase B
       PFLU_4713 ribosomal large subunit pseudouridine synthase C
       PFLU_0780 rluD; ribosomal large subunit pseudouridine synthase D
       PFLU_5395 rluE; ribosomal large subunit pseudouridine synthase E
       PFLU_1201 conserved hypothetical protein
       PFLU_0684 putative ribosomal-protein-alanine acetyltransferase
       PFLU_2731 putative glycoprotein peptidase-acetyltransferase fusion protein
       PFLU_0261 rimK; ribosomal protein S6 modification protein
       PFLU_5011 16S rRNA processing protein
       PFLU_1203 conserved hypothetical protein
       PFLU_3408 conserved hypothetical protein
       PFLU_0616 prmA; ribosomal protein L11 methyltransferase
       PFLU_4341 conserved hypothetical protein
       PFLU_3814 conserved hypothetical protein
       PFLU_4714 rne; putative ribonuclease E
       PFLU_0867 cafA; ribonuclease G
       PFLU_1726 deaD; cold-shock dead-box protein A
       PFLU_5691 dbpA; ATP-independent RNA helicase
       PFLU_0511 putative GTP-ase
       PFLU_5053 GTP-binding protein
       PFLU_0521 hflX; GTP-binding protein HflX
       PFLU_0021 conserved hypothetical protein
       PFLU_5995 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
       PFLU_5252 ribosome-binding factor A
       PFLU_5255 conserved hypothetical protein
       PFLU_5425 conserved hypothetical protein
       PFLU_5406 conserved hypothetical protein
       PFLU_5262 conserved hypothetical protein
       PFLU_0881 rpoX; putative sigma-54 modulation protein
       PFLU_0729 putative GTP-binding protein
K03685 rnc; ribonuclease III [EC:3.1.26.3]
K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
K13288 orn; oligoribonuclease [EC:3.1.-.-]
K03595 era; GTPase
K03979 obgE; GTPase [EC:3.6.5.-]
K06204 dksA; DnaK suppressor protein
K06204 dksA; DnaK suppressor protein
K06204 dksA; DnaK suppressor protein
K02600 nusA; transcription termination/antitermination protein NusA
K03625 nusB; transcription antitermination protein NusB
K02601 nusG; transcription termination/antitermination protein NusG
K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
K12297 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase / 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.173 2.1.1.264]
K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
K02860 rimM; 16S rRNA processing protein RimM
K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
K08300 rne; ribonuclease E [EC:3.1.26.12]
K08301 rng; ribonuclease G [EC:3.1.26.-]
K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:3.6.4.13]
K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
K03977 engA; GTPase
K03665 hflX; GTPase
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
K02834 rbfA; ribosome-binding factor A
K09748 rimP; ribosome maturation factor RimP
K09710 ybeB; ribosome-associated protein
K07042 ybeY; probable rRNA maturation factor
K07574 yhbY; RNA-binding protein
K05808 yhbH; putative sigma-54 modulation protein
K06942 ychF; ribosome-binding ATPase
     03016 Transfer RNA biogenesis [BR:pfs03016]
     03012 Translation factors [BR:pfs03012]
     03110 Chaperones and folding catalysts [BR:pfs03110]
     04131 Membrane trafficking [BR:pfs04131]
     04121 Ubiquitin system [BR:pfs04121]
     03051 Proteasome [BR:pfs03051]
     03032 DNA replication proteins [BR:pfs03032]
     03036 Chromosome and associated proteins [BR:pfs03036]
     03400 DNA repair and recombination proteins [BR:pfs03400]
     03029 Mitochondrial biogenesis [BR:pfs03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: June 1, 2020